Package index
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REDCap_split()
- Split REDCap repeating instruments table into multiple tables
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all_na()
- Check if vector is all NA
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apply_factor_labels()
- Preserve all factor levels from REDCap data dictionary in data export
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apply_field_label()
- Apply REDCap filed labels to data frame
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as_factor()
- Convert labelled vectors to factors while preserving attributes
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case_match_regex_list()
- List-base regex case_when
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cast_data_overview()
- Overview of REDCapCAST data for shiny
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cast_meta_overview()
- Overview of REDCapCAST meta data for shiny
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char2choice()
- Simple function to generate REDCap choices from character vector
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char2cond()
- Simple function to generate REDCap branching logic from character vector
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clean_field_label()
- Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...</p>').
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clean_redcap_name()
- clean_redcap_name
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compact_vec()
- Compacting a vector of any length with or without names
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create_html_table()
- Create two-column HTML table for data piping in REDCap instruments
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create_instrument_meta()
- DEPRICATED Create zips file with necessary content based on data set
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d2w()
- Convert single digits to words
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doc2dd()
- Doc table to data dictionary - EARLY, DOCS MISSING
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ds2dd()
- (DEPRECATED) Data set to data dictionary function
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ds2dd_detailed()
- Extract data from stata file for data dictionary
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easy_redcap()
- Secure API key storage and data acquisition in one
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export_redcap_instrument()
- Creates zip-file with necessary content to manually add instrument to database
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fct2num()
- Allows conversion of factor to numeric values preserving original levels
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fct_drop.data.frame()
- Drop unused levels preserving label data
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file_extension()
- DEPRECATED Helper to import files correctly
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focused_metadata()
- focused_metadata
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format_redcap_factor()
- Converts REDCap choices to factor levels and stores in labels attribute
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format_subheader()
- Sub-header formatting wrapper
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get_api_key()
- Retrieve project API key if stored, if not, set and retrieve
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get_attr()
- Extract attribute. Returns NA if none
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get_id_name()
- Get the id name
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guess_time_only()
- Guess time variables based on naming pattern
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guess_time_only_filter()
- Try at determining which are true time only variables
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haven_all_levels()
- Finish incomplete haven attributes substituting missings with values
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hms2character()
- Change "hms" to "character" for REDCap upload.
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html_tag_wrap()
- Simple html tag wrapping for REDCap text formatting
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is.labelled()
- Tests for multiple label classes
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is_missing()
- Multi missing check
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is_repeated_longitudinal()
- Test if repeatable or longitudinal
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mark_complete()
- Completion marking based on completed upload
-
match_fields_to_form()
- Match fields to forms
-
mtcars_redcap
- mtcars dataset slightly modified to use for Shiny app upload demonstration
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named_levels()
- Get named vector of factor levels and values
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nav_bar_page()
- Nav_bar defining function for shiny ui
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numchar2fct()
- Applying var2fct across data set
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parse_data()
- Helper to auto-parse un-formatted data with haven and readr
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possibly_numeric()
- Tests if vector can be interpreted as numeric without introducing NAs by coercion
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possibly_roman()
- Test if vector can be interpreted as roman numerals
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process_user_input()
- User input processing
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process_user_input(<character>)
- User input processing character
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process_user_input(<data.frame>)
- User input processing data.frame
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process_user_input(<default>)
- User input processing default
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process_user_input(<response>)
- User input processing response
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read_input()
- Flexible file import based on extension
-
read_redcap_instrument()
- Convenience function to download complete instrument, using token storage in keyring.
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read_redcap_tables()
- Download REDCap data
-
redcap_wider()
- Transforms list of REDCap data.frames to a single wide data.frame
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redcapcast_data
- Data set for demonstration
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redcapcast_meta
- REDCap metadata from data base
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replace_curly_quote()
- Replace curly apostrophes and quotes from word
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sanitize_split()
- Sanitize list of data frames
-
set_attr()
- Set attributes for named attribute. Appends if attr is NULL
-
shiny_cast()
- Launch the included Shiny-app for database casting and upload
-
split_non_repeating_forms()
- Split a data frame into separate tables for each form
-
strsplitx()
- Extended string splitting
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suffix2label()
- Transfer variable name suffix to label in widened data
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time_only_correction()
- Correction based on time_only_filter function
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var2fct()
- Convert vector to factor based on threshold of number of unique levels
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vec2choice()
- Named vector to REDCap choices (`wrapping compact_vec()`)