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<img src="../logo.png" class="logo" alt=""><h1>Introduction</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
<div class="d-none name"><code>Introduction.Rmd</code></div>
</div>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
<p>This vignette covers the included functions and basic
functionality.</p>
<p>A dataset and a meta data file are provided with the package for
demonstration of the functions.</p>
<div class="section level2">
<h2 id="splitting-the-dataset">Splitting the dataset<a class="anchor" aria-label="anchor" href="#splitting-the-dataset"></a>
</h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="redcap_event_name">redcap_event_name</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="diabetes">diabetes</th>
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<td headers="record_id" class="gt_row gt_right">1</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">1203401OB4</td>
<td headers="inclusion" class="gt_row gt_right">2023-03-13</td>
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<td headers="dob" class="gt_row gt_right">1940-03-12</td>
<td headers="age" class="gt_row gt_right">83.00239</td>
<td headers="age_integer" class="gt_row gt_right">83</td>
<td headers="sex" class="gt_row gt_left">female</td>
<td headers="cohabitation" class="gt_row gt_left">Yes</td>
<td headers="hypertension" class="gt_row gt_left">No</td>
<td headers="diabetes" class="gt_row gt_left">Yes</td>
<td headers="region" class="gt_row gt_left">East</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Incomplete</td>
<td headers="mrs_assessed" class="gt_row gt_left">Yes</td>
<td headers="mrs_date" class="gt_row gt_right">2023-03-13</td>
<td headers="mrs_score" class="gt_row gt_right">1</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
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<tr>
<td headers="record_id" class="gt_row gt_right">2</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">0102342303</td>
<td headers="inclusion" class="gt_row gt_right">2023-03-01</td>
<td headers="inclusion_time" class="gt_row gt_center">10:38:57</td>
<td headers="dob" class="gt_row gt_right">1934-02-01</td>
<td headers="age" class="gt_row gt_right">89.07780</td>
<td headers="age_integer" class="gt_row gt_right">89</td>
<td headers="sex" class="gt_row gt_left">male</td>
<td headers="cohabitation" class="gt_row gt_left">Yes</td>
<td headers="hypertension" class="gt_row gt_left">No</td>
<td headers="diabetes" class="gt_row gt_left">No</td>
<td headers="region" class="gt_row gt_left">South</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Incomplete</td>
<td headers="mrs_assessed" class="gt_row gt_left">Yes</td>
<td headers="mrs_date" class="gt_row gt_right">2023-03-07</td>
<td headers="mrs_score" class="gt_row gt_right">1</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">2</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow1</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">Yes</td>
<td headers="mrs_date" class="gt_row gt_right">2023-03-09</td>
<td headers="mrs_score" class="gt_row gt_right">3</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">2</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow1</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">1</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:49:42</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">TIA</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">2301569823</td>
<td headers="inclusion" class="gt_row gt_right">2022-03-08</td>
<td headers="inclusion_time" class="gt_row gt_center">12:01:07</td>
<td headers="dob" class="gt_row gt_right">1956-01-23</td>
<td headers="age" class="gt_row gt_right">66.12319</td>
<td headers="age_integer" class="gt_row gt_right">66</td>
<td headers="sex" class="gt_row gt_left">male</td>
<td headers="cohabitation" class="gt_row gt_left">No</td>
<td headers="hypertension" class="gt_row gt_left">Yes</td>
<td headers="diabetes" class="gt_row gt_left">Yes</td>
<td headers="region" class="gt_row gt_left">North</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Incomplete</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow1</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">Yes</td>
<td headers="mrs_date" class="gt_row gt_right">2022-08-16</td>
<td headers="mrs_score" class="gt_row gt_right">2</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">Yes</td>
<td headers="mrs_date" class="gt_row gt_right">2023-03-13</td>
<td headers="mrs_score" class="gt_row gt_right">1</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow1</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">1</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:49:58</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">AIS</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow1</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">2</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:01</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">ICH</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">1</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:05</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">ICH</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">2</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:07</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">TIA</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">3</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">3</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:09</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">AIS</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">4</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">0204051342</td>
<td headers="inclusion" class="gt_row gt_right">2023-03-14</td>
<td headers="inclusion_time" class="gt_row gt_center">20:39:19</td>
<td headers="dob" class="gt_row gt_right">1905-04-02</td>
<td headers="age" class="gt_row gt_right">117.94903</td>
<td headers="age_integer" class="gt_row gt_right">117</td>
<td headers="sex" class="gt_row gt_left">female</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Incomplete</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">4</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">4</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">1</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:19</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">AIS</td>
<td headers="new_event_complete" class="gt_row gt_left">Complete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">4</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">2</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:22</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">ICH</td>
<td headers="new_event_complete" class="gt_row gt_left">Incomplete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">4</td>
<td headers="redcap_event_name" class="gt_row gt_left">follow2</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">New Event (?)</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">3</td>
<td headers="cpr" class="gt_row gt_left">NA</td>
<td headers="inclusion" class="gt_row gt_right">NA</td>
<td headers="inclusion_time" class="gt_row gt_center">NA</td>
<td headers="dob" class="gt_row gt_right">NA</td>
<td headers="age" class="gt_row gt_right">NA</td>
<td headers="age_integer" class="gt_row gt_right">NA</td>
<td headers="sex" class="gt_row gt_left">NA</td>
<td headers="cohabitation" class="gt_row gt_left">NA</td>
<td headers="hypertension" class="gt_row gt_left">NA</td>
<td headers="diabetes" class="gt_row gt_left">NA</td>
<td headers="region" class="gt_row gt_left">NA</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">NA</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">NA</td>
<td headers="event_datetime" class="gt_row gt_right">2024-01-18 12:50:24</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">Unknown</td>
<td headers="new_event_complete" class="gt_row gt_left">Complete</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">5</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">0201976043</td>
<td headers="inclusion" class="gt_row gt_right">2023-03-23</td>
<td headers="inclusion_time" class="gt_row gt_center">08:50:31</td>
<td headers="dob" class="gt_row gt_right">1897-01-02</td>
<td headers="age" class="gt_row gt_right">126.21751</td>
<td headers="age_integer" class="gt_row gt_right">126</td>
<td headers="sex" class="gt_row gt_left">male</td>
<td headers="cohabitation" class="gt_row gt_left">No</td>
<td headers="hypertension" class="gt_row gt_left">Yes</td>
<td headers="diabetes" class="gt_row gt_left">Yes</td>
<td headers="region" class="gt_row gt_left">East</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Complete</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="record_id" class="gt_row gt_right">6</td>
<td headers="redcap_event_name" class="gt_row gt_left">inclusion</td>
<td headers="redcap_repeat_instrument" class="gt_row gt_left">NA</td>
<td headers="redcap_repeat_instance" class="gt_row gt_right">NA</td>
<td headers="cpr" class="gt_row gt_left">1202320122</td>
<td headers="inclusion" class="gt_row gt_right">2024-01-25</td>
<td headers="inclusion_time" class="gt_row gt_center">08:49:28</td>
<td headers="dob" class="gt_row gt_right">1932-02-12</td>
<td headers="age" class="gt_row gt_right">91.95261</td>
<td headers="age_integer" class="gt_row gt_right">91</td>
<td headers="sex" class="gt_row gt_left">female</td>
<td headers="cohabitation" class="gt_row gt_left">No</td>
<td headers="hypertension" class="gt_row gt_left">Yes</td>
<td headers="diabetes" class="gt_row gt_left">No</td>
<td headers="region" class="gt_row gt_left">East</td>
<td headers="baseline_data_start_complete" class="gt_row gt_left">Complete</td>
<td headers="mrs_assessed" class="gt_row gt_left">NA</td>
<td headers="mrs_date" class="gt_row gt_right">NA</td>
<td headers="mrs_score" class="gt_row gt_right">NA</td>
<td headers="mrs_complete" class="gt_row gt_left">Incomplete</td>
<td headers="event_datetime" class="gt_row gt_right">NA</td>
<td headers="event_age" class="gt_row gt_center">NA</td>
<td headers="event_type" class="gt_row gt_left">NA</td>
<td headers="new_event_complete" class="gt_row gt_left">NA</td>
</tr>
</tbody>
</table>
</div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="question_number">question_number</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="matrix_ranking">matrix_ranking</th>
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<tbody class="gt_table_body">
<tr>
<td headers="field_name" class="gt_row gt_left">record_id</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">ID</td>
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<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">cpr</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">CPR (Danish civil registration number)</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">ddmmyyxxxx</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">y</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">y</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">inclusion</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">Inclusion date</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">date_ymd</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">dob</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">Date of birth (From CPR)</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">date_ymd</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">@CALCTEXT(if([cpr]!="", concat(if(mid([cpr], 7, 1)&gt;=0 and mid([cpr], 7, 1)&lt;=3,19, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=36 and mid([cpr], 7, 1)&gt;=4 and mid([cpr], 7, 1)&lt;=4,20, if(mid([cpr], 5, 2)&gt;=37 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=4 and mid([cpr], 7, 1)&lt;=4,19, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=57 and mid([cpr], 7, 1)&gt;=5 and mid([cpr], 7, 1)&lt;=5,20, if(mid([cpr], 5, 2)&gt;=58 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=5 and mid([cpr], 7, 1)&lt;=5,18, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=57 and mid([cpr], 7, 1)&gt;=6 and mid([cpr], 7, 1)&lt;=6,20, if(mid([cpr], 5, 2)&gt;=58 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=6 and mid([cpr], 7, 1)&lt;=6,18, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=57 and mid([cpr], 7, 1)&gt;=7 and mid([cpr], 7, 1)&lt;=7,20, if(mid([cpr], 5, 2)&gt;=58 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=7 and mid([cpr], 7, 1)&lt;=7,18, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=57 and mid([cpr], 7, 1)&gt;=8 and mid([cpr], 7, 1)&lt;=8,20, if(mid([cpr], 5, 2)&gt;=58 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=8 and mid([cpr], 7, 1)&lt;=8,18, if(mid([cpr], 5, 2)&gt;=0 and mid([cpr], 5, 2)&lt;=36 and mid([cpr], 7, 1)&gt;=9 and mid([cpr], 7, 1)&lt;=9,20, if(mid([cpr], 5, 2)&gt;=37 and mid([cpr], 5, 2)&lt;=99 and mid([cpr], 7, 1)&gt;=9 and mid([cpr], 7, 1)&lt;=9,19,17))))))))))))), mid([cpr], 5, 2), "-",mid([cpr],3, 2), "-", left([cpr], 2) ), ""))</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">age</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">calc</td>
<td headers="field_label" class="gt_row gt_left">Age
Note: Apparently, the build in datediff() function does not handle counting whole years. This results in wrongly counting age higher around the date of birth.</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">if([cpr]!="" and [inclusion]!="", datediff([dob], [inclusion], 'y'), "")</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">age_integer</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">calc</td>
<td headers="field_label" class="gt_row gt_left">Age integer
Note: as opposed to the build in datediff() this handles counting years as integers very well. Calculate decimal years in statistical programming software. In R you can use with(ds, stRoke::age_calc(dob, inclusion)).</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">if([cpr]!="", left([inclusion], 4)-left([dob], 4) - if(mid([dob], 6, 2) &lt; mid([inclusion], 6, 2) or (mid([dob], 6, 2) = mid([inclusion], 6, 2) and mid([dob], 9, 2) &lt;= mid([inclusion], 9, 2)), 0, 1),"")</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">sex</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">Legal sex</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">@CALCTEXT(if([cpr]!="",if((right([cpr],1)=1 or right([cpr],1)=3 or right([cpr],1)=5 or right([cpr],1)=7 or right([cpr],1)=9),"male","female"),""))</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">cohabitation</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">History and social</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">Cohabitation</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, Yes | 2, No</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">hypertension</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">Hypertension</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, Yes | 2, No</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">diabetes</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">Diabetes</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, Yes | 2, No</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">region</td>
<td headers="form_name" class="gt_row gt_left">baseline_data_start</td>
<td headers="section_header" class="gt_row gt_left">Area</td>
<td headers="field_type" class="gt_row gt_left">dropdown</td>
<td headers="field_label" class="gt_row gt_left">Region</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, North | 2, East | 3, South | 4, West</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">autocomplete</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">mrs_assessed</td>
<td headers="form_name" class="gt_row gt_left">mrs</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">Assesed</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, Yes | 2, No</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">mrs_date</td>
<td headers="form_name" class="gt_row gt_left">mrs</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">Assessment date</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">date_dmy</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">mrs_score</td>
<td headers="form_name" class="gt_row gt_left">mrs</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">mRS score</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">0, 0 | 1, 1 | 2, 2 | 3, 3 | 4, 4 | 5, 5</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">event_date</td>
<td headers="form_name" class="gt_row gt_left">new_event</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">text</td>
<td headers="field_label" class="gt_row gt_left">Date of event</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">NA</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">date_dmy</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
<tr>
<td headers="field_name" class="gt_row gt_left">event_type</td>
<td headers="form_name" class="gt_row gt_left">new_event</td>
<td headers="section_header" class="gt_row gt_left">NA</td>
<td headers="field_type" class="gt_row gt_left">radio</td>
<td headers="field_label" class="gt_row gt_left">Neurovascular event</td>
<td headers="select_choices_or_calculations" class="gt_row gt_left">1, TIA | 2, AIS | 3, ICH | 4, SAH | 99, Unknown</td>
<td headers="field_note" class="gt_row gt_left">NA</td>
<td headers="text_validation_type_or_show_slider_number" class="gt_row gt_left">NA</td>
<td headers="text_validation_min" class="gt_row gt_left">NA</td>
<td headers="text_validation_max" class="gt_row gt_left">NA</td>
<td headers="identifier" class="gt_row gt_left">NA</td>
<td headers="branching_logic" class="gt_row gt_left">NA</td>
<td headers="required_field" class="gt_row gt_left">NA</td>
<td headers="custom_alignment" class="gt_row gt_left">NA</td>
<td headers="question_number" class="gt_row gt_left">NA</td>
<td headers="matrix_group_name" class="gt_row gt_left">NA</td>
<td headers="matrix_ranking" class="gt_row gt_left">NA</td>
<td headers="field_annotation" class="gt_row gt_left">NA</td>
</tr>
</tbody>
</table>
</div>
<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">list</span> <span class="op">&lt;-</span></span>
<span> <span class="fu"><a href="../reference/REDCap_split.html">REDCap_split</a></span><span class="op">(</span></span>
<span> records <span class="op">=</span> <span class="va">redcapcast_data</span>,</span>
<span> metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>
<span> forms <span class="op">=</span> <span class="st">"repeating"</span></span>
<span> <span class="op">)</span> <span class="op">|&gt;</span> </span>
<span> <span class="fu"><a href="../reference/sanitize_split.html">sanitize_split</a></span><span class="op">(</span><span class="op">)</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span></span>
<span><span class="co">#&gt; List of 2</span></span>
<span><span class="co">#&gt; $ : tibble [10 × 17] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; ..$ record_id : num [1:10] 1 2 2 3 3 3 4 4 5 6</span></span>
<span><span class="co">#&gt; ..$ redcap_event_name : chr [1:10] "inclusion" "inclusion" "follow1" "inclusion" ...</span></span>
<span><span class="co">#&gt; ..$ cpr : chr [1:10] "1203401OB4" "0102342303" NA "2301569823" ...</span></span>
<span><span class="co">#&gt; ..$ inclusion : Date[1:10], format: "2023-03-13" "2023-03-01" ...</span></span>
<span><span class="co">#&gt; ..$ dob : Date[1:10], format: "1940-03-12" "1934-02-01" ...</span></span>
<span><span class="co">#&gt; ..$ age : num [1:10] 83 89.1 NA 66.1 NA ...</span></span>
<span><span class="co">#&gt; ..$ age_integer : num [1:10] 83 89 NA 66 NA NA 117 NA 126 91</span></span>
<span><span class="co">#&gt; ..$ sex : chr [1:10] "female" "male" NA "male" ...</span></span>
<span><span class="co">#&gt; ..$ cohabitation : chr [1:10] "Yes" "Yes" NA "No" ...</span></span>
<span><span class="co">#&gt; ..$ hypertension : chr [1:10] "No" "No" NA "Yes" ...</span></span>
<span><span class="co">#&gt; ..$ diabetes : chr [1:10] "Yes" "No" NA "Yes" ...</span></span>
<span><span class="co">#&gt; ..$ region : chr [1:10] "East" "South" NA "North" ...</span></span>
<span><span class="co">#&gt; ..$ baseline_data_start_complete: chr [1:10] "Incomplete" "Incomplete" NA "Incomplete" ...</span></span>
<span><span class="co">#&gt; ..$ mrs_assessed : chr [1:10] "Yes" "Yes" "Yes" NA ...</span></span>
<span><span class="co">#&gt; ..$ mrs_date : Date[1:10], format: "2023-03-13" "2023-03-07" ...</span></span>
<span><span class="co">#&gt; ..$ mrs_score : num [1:10] 1 1 3 NA 2 1 NA NA NA NA</span></span>
<span><span class="co">#&gt; ..$ mrs_complete : chr [1:10] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ new_event: tibble [9 × 6] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; ..$ record_id : num [1:9] 2 3 3 3 3 3 4 4 4</span></span>
<span><span class="co">#&gt; ..$ redcap_event_name : chr [1:9] "follow1" "follow1" "follow1" "follow2" ...</span></span>
<span><span class="co">#&gt; ..$ redcap_repeat_instrument: chr [1:9] "new_event" "new_event" "new_event" "new_event" ...</span></span>
<span><span class="co">#&gt; ..$ redcap_repeat_instance : num [1:9] 1 1 2 1 2 3 1 2 3</span></span>
<span><span class="co">#&gt; ..$ event_type : chr [1:9] "TIA" "AIS" "ICH" "ICH" ...</span></span>
<span><span class="co">#&gt; ..$ new_event_complete : chr [1:9] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span></code></pre></div>
<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">list</span> <span class="op">&lt;-</span></span>
<span> <span class="fu"><a href="../reference/REDCap_split.html">REDCap_split</a></span><span class="op">(</span></span>
<span> records <span class="op">=</span> <span class="va">redcapcast_data</span>,</span>
<span> metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>
<span> forms <span class="op">=</span> <span class="st">"all"</span></span>
<span> <span class="op">)</span> <span class="op">|&gt;</span> </span>
<span> <span class="fu"><a href="../reference/sanitize_split.html">sanitize_split</a></span><span class="op">(</span><span class="op">)</span></span>
<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span></span>
<span><span class="co">#&gt; List of 3</span></span>
<span><span class="co">#&gt; $ baseline_data_start: tibble [6 × 13] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; ..$ record_id : num [1:6] 1 2 3 4 5 6</span></span>
<span><span class="co">#&gt; ..$ redcap_event_name : chr [1:6] "inclusion" "inclusion" "inclusion" "inclusion" ...</span></span>
<span><span class="co">#&gt; ..$ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
<span><span class="co">#&gt; ..$ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
<span><span class="co">#&gt; ..$ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
<span><span class="co">#&gt; ..$ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
<span><span class="co">#&gt; ..$ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
<span><span class="co">#&gt; ..$ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
<span><span class="co">#&gt; ..$ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
<span><span class="co">#&gt; ..$ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; ..$ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; ..$ region : chr [1:6] "East" "South" "North" NA ...</span></span>
<span><span class="co">#&gt; ..$ baseline_data_start_complete: chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ mrs : tibble [5 × 6] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; ..$ record_id : num [1:5] 1 2 2 3 3</span></span>
<span><span class="co">#&gt; ..$ redcap_event_name: chr [1:5] "inclusion" "inclusion" "follow1" "follow1" ...</span></span>
<span><span class="co">#&gt; ..$ mrs_assessed : chr [1:5] "Yes" "Yes" "Yes" "Yes" ...</span></span>
<span><span class="co">#&gt; ..$ mrs_date : Date[1:5], format: "2023-03-13" "2023-03-07" ...</span></span>
<span><span class="co">#&gt; ..$ mrs_score : num [1:5] 1 1 3 2 1</span></span>
<span><span class="co">#&gt; ..$ mrs_complete : chr [1:5] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ new_event : tibble [9 × 6] (S3: tbl_df/tbl/data.frame)</span></span>
<span><span class="co">#&gt; ..$ record_id : num [1:9] 2 3 3 3 3 3 4 4 4</span></span>
<span><span class="co">#&gt; ..$ redcap_event_name : chr [1:9] "follow1" "follow1" "follow1" "follow2" ...</span></span>
<span><span class="co">#&gt; ..$ redcap_repeat_instrument: chr [1:9] "new_event" "new_event" "new_event" "new_event" ...</span></span>
<span><span class="co">#&gt; ..$ redcap_repeat_instance : num [1:9] 1 1 2 1 2 3 1 2 3</span></span>
<span><span class="co">#&gt; ..$ event_type : chr [1:9] "TIA" "AIS" "ICH" "ICH" ...</span></span>
<span><span class="co">#&gt; ..$ new_event_complete : chr [1:9] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="reading-data-from-redcap">Reading data from REDCap<a class="anchor" aria-label="anchor" href="#reading-data-from-redcap"></a>
</h2>
<p>This function wraps all the above demonstrated function to get the
dataset, the metadata, apply the <code>REDCap_split</code>function and
then a bit of cleaning. It just cuts outs all the steps for an easier
approach.</p>
<p>The function works very similar to the
<code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code> in allowing to specify fields,
events and forms for export instead of exporting the whole database and
filtering afterwards. I believe this is a better and safer, focused
approach.</p>
<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="co"># read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="pivotting-to-wider-format">Pivotting to wider format<a class="anchor" aria-label="anchor" href="#pivotting-to-wider-format"></a>
</h2>
<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="../reference/redcap_wider.html">redcap_wider</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
<span><span class="co">#&gt; Joining with `by = join_by(record_id)`</span></span>
<span><span class="co">#&gt; Joining with `by = join_by(record_id)`</span></span>
<span><span class="co">#&gt; 'data.frame': 6 obs. of 36 variables:</span></span>
<span><span class="co">#&gt; $ record_id : num 1 2 3 4 5 6</span></span>
<span><span class="co">#&gt; $ cpr : chr "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
<span><span class="co">#&gt; $ inclusion : Date, format: "2023-03-13" "2023-03-01" ...</span></span>
<span><span class="co">#&gt; $ dob : Date, format: "1940-03-12" "1934-02-01" ...</span></span>
<span><span class="co">#&gt; $ age : num 83 89.1 66.1 117.9 126.2 ...</span></span>
<span><span class="co">#&gt; $ age_integer : num 83 89 66 117 126 91</span></span>
<span><span class="co">#&gt; $ sex : chr "female" "male" "male" "female" ...</span></span>
<span><span class="co">#&gt; $ cohabitation : chr "Yes" "Yes" "No" NA ...</span></span>
<span><span class="co">#&gt; $ hypertension : chr "No" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ diabetes : chr "Yes" "No" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ region : chr "East" "South" "North" NA ...</span></span>
<span><span class="co">#&gt; $ baseline_data_start_complete: chr "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed_inclusion : chr "Yes" "Yes" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed_follow1 : chr NA "Yes" "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_assessed_follow2 : chr NA NA "Yes" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_date_inclusion : Date, format: "2023-03-13" "2023-03-07" ...</span></span>
<span><span class="co">#&gt; $ mrs_date_follow1 : Date, format: NA "2023-03-09" ...</span></span>
<span><span class="co">#&gt; $ mrs_date_follow2 : Date, format: NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_score_inclusion : num 1 1 NA NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score_follow1 : num NA 3 2 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_score_follow2 : num NA NA 1 NA NA NA</span></span>
<span><span class="co">#&gt; $ mrs_complete_inclusion : chr "Incomplete" "Incomplete" NA NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete_follow1 : chr NA "Incomplete" "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ mrs_complete_follow2 : chr NA NA "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ event_type_1_follow1 : chr NA "TIA" "AIS" NA ...</span></span>
<span><span class="co">#&gt; $ event_type_1_follow2 : chr NA NA "ICH" "AIS" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_1_follow1: chr NA "Incomplete" "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_1_follow2: chr NA NA "Incomplete" "Complete" ...</span></span>
<span><span class="co">#&gt; $ event_type_2_follow1 : chr NA NA "ICH" NA ...</span></span>
<span><span class="co">#&gt; $ event_type_2_follow2 : chr NA NA "TIA" "ICH" ...</span></span>
<span><span class="co">#&gt; $ event_type_3_follow1 : chr NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ event_type_3_follow2 : chr NA NA "AIS" "Unknown" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_2_follow1: chr NA NA "Incomplete" NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_2_follow2: chr NA NA "Incomplete" "Incomplete" ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_3_follow1: chr NA NA NA NA ...</span></span>
<span><span class="co">#&gt; $ new_event_complete_3_follow2: chr NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
</div>
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