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@ -31,7 +31,7 @@
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<a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a>
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||||
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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||||
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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||||
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||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -68,13 +68,13 @@
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<p>Damsbo A, Egeler P (2024).
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<em>REDCapCAST: REDCap Castellated Data Handling</em>.
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R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
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R package version 24.1.2, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
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</p>
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<pre>@Manual{,
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title = {REDCapCAST: REDCap Castellated Data Handling},
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author = {Andreas Gammelgaard Damsbo and Paul Egeler},
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year = {2024},
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note = {R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/},
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note = {R package version 24.1.2, https://agdamsbo.github.io/REDCapCAST/},
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url = {https://github.com/agdamsbo/REDCapCAST},
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}</pre>
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</div>
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@ -59,7 +59,7 @@
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -50,6 +50,18 @@
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<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
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</div>
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<div class="section level2">
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<h2 class="pkg-version" data-toc-text="24.1.2" id="redcapcast-2412">REDCapCAST 24.1.2<a class="anchor" aria-label="anchor" href="#redcapcast-2412"></a></h2>
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<div class="section level4">
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<h4 id="functions-24-1-2">Functions<a class="anchor" aria-label="anchor" href="#functions-24-1-2"></a></h4>
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<ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li>
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<li><p>NEW: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: extension of the <code><a href="../reference/ds2dd.html">ds2dd()</a></code>, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the <code><a href="../reference/guess_time_only_filter.html">guess_time_only_filter()</a></code>, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.</p></li>
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</ul></div>
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<div class="section level4">
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<h4 id="other-24-1-2">Other<a class="anchor" aria-label="anchor" href="#other-24-1-2"></a></h4>
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<p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package.</p>
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</div>
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</div>
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<div class="section level2">
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<h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p>
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<div class="section level4">
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@ -3,7 +3,7 @@ pkgdown: 2.0.7
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pkgdown_sha: ~
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articles:
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Introduction: Introduction.html
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last_built: 2024-01-17T13:05Z
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last_built: 2024-01-18T14:08Z
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urls:
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reference: https://agdamsbo.github.io/REDCapCAST/reference
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article: https://agdamsbo.github.io/REDCapCAST/articles
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@ -14,7 +14,7 @@ is used to determine which fields should be included in each resultant table."><
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -14,7 +14,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -1,7 +1,7 @@
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<!DOCTYPE html>
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||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Migrated from stRoke ds2dd(). Fits better with the functionality of
|
||||
'REDCapCAST'"><title>Data set to data dictionary function — ds2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Data set to data dictionary function — ds2dd"><meta property="og:description" content="Migrated from stRoke ds2dd(). Fits better with the functionality of
|
||||
'REDCapCAST'"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
|
||||
for a more advanced function."><title>(DEPRECATED) Data set to data dictionary function — ds2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="(DEPRECATED) Data set to data dictionary function — ds2dd"><meta property="og:description" content="Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
|
||||
for a more advanced function."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
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<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
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<![endif]--></head><body>
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@ -12,7 +12,7 @@
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
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@ -48,14 +48,14 @@
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</nav><div class="container template-reference-topic">
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Data set to data dictionary function</h1>
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<img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
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<div class="d-none name"><code>ds2dd.Rd</code></div>
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</div>
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<div class="ref-description section level2">
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<p>Migrated from stRoke ds2dd(). Fits better with the functionality of
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'REDCapCAST'</p>
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<p>Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
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for a more advanced function.</p>
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</div>
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<div class="section level2">
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@ -67,7 +67,7 @@
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<span> field.type <span class="op">=</span> <span class="st">"text"</span>,</span>
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<span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> include.column.names <span class="op">=</span> <span class="cn">FALSE</span>,</span>
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<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">redcapcast_meta</span><span class="op">)</span></span>
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<span> metadata <span class="op">=</span> <span class="va">metadata_names</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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|
||||
@ -105,7 +105,7 @@ column names for original data set for upload.</p></dd>
|
||||
|
||||
<dt>metadata</dt>
|
||||
<dd><p>Metadata column names. Default is the included
|
||||
REDCapCAST::redcapcast_data.</p></dd>
|
||||
REDCapCAST::metadata_names.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
@ -114,6 +114,11 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
|
||||
<p>data.frame or list of data.frame and vector</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
|
||||
<p>Migrated from stRoke ds2dd(). Fits better with the functionality of
|
||||
'REDCapCAST'.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
@ -127,22 +132,23 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 redcap_repeat_instance basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 cpr basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 inclusion basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 dob basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 age basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 age_integer basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 sex basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 cohabitation basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 hypertension basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 diabetes basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 region basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 baseline_data_start_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 mrs_assessed basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 mrs_date basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 mrs_score basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19 mrs_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 event_date basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 event_type basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 new_event_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 inclusion_time basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 dob basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 age basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 age_integer basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 sex basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 cohabitation basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 hypertension basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 diabetes basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 region basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 baseline_data_start_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 mrs_assessed basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 mrs_date basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19 mrs_score basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 mrs_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 event_datetime basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 event_type basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 new_event_complete basis NA text</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_label select_choices_or_calculations field_note</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 record_id NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 redcap_event_name NA NA</span>
|
||||
@ -150,22 +156,23 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 redcap_repeat_instance NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 cpr NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 inclusion NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 dob NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 age NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 age_integer NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 sex NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 cohabitation NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 hypertension NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 diabetes NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 region NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 baseline_data_start_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 mrs_assessed NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 mrs_date NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 mrs_score NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19 mrs_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 event_date NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 event_type NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 new_event_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 inclusion_time NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 dob NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 age NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 age_integer NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 sex NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 cohabitation NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 hypertension NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 diabetes NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 region NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 baseline_data_start_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 mrs_assessed NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 mrs_date NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 19 mrs_score NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 mrs_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 event_datetime NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 event_type NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 new_event_complete NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> text_validation_type_or_show_slider_number text_validation_min</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 NA NA</span>
|
||||
@ -189,6 +196,7 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> text_validation_max identifier branching_logic required_field</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 NA NA NA NA</span>
|
||||
@ -212,6 +220,7 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> custom_alignment question_number matrix_group_name matrix_ranking</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 NA NA NA NA</span>
|
||||
@ -235,6 +244,7 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 NA NA NA NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_annotation</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 NA</span>
|
||||
@ -258,19 +268,21 @@ REDCapCAST::redcapcast_data.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 20 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 21 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 22 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 23 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $`Column names`</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "record_id" "redcap_event_name" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [3] "redcap_repeat_instrument" "redcap_repeat_instance" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [5] "cpr" "inclusion" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] "dob" "age" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] "age_integer" "sex" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] "cohabitation" "hypertension" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] "diabetes" "region" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [15] "baseline_data_start_complete" "mrs_assessed" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] "mrs_date" "mrs_score" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] "mrs_complete" "event_date" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] "event_type" "new_event_complete" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [7] "inclusion_time" "dob" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [9] "age" "age_integer" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [11] "sex" "cohabitation" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [13] "hypertension" "diabetes" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [15] "region" "baseline_data_start_complete"</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [17] "mrs_assessed" "mrs_date" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [19] "mrs_score" "mrs_complete" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [21] "event_datetime" "event_type" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [23] "new_event_complete" </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
|
||||
372
reference/ds2dd_detailed.html
Normal file
372
reference/ds2dd_detailed.html
Normal file
@ -0,0 +1,372 @@
|
||||
<!DOCTYPE html>
|
||||
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||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Extract data from stata file for data dictionary</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ds2dd_detailed</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> add.auto.id <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> date.format <span class="op">=</span> <span class="st">"dmy"</span>,</span>
|
||||
<span> form.name <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> field.type <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span>
|
||||
<span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span>
|
||||
<span> metadata <span class="op">=</span> <span class="va">metadata_names</span>,</span>
|
||||
<span> validate.time <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> time.var.sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span>
|
||||
<span> time.var.sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
<dd><p>data frame</p></dd>
|
||||
|
||||
|
||||
<dt>add.auto.id</dt>
|
||||
<dd><p>flag to add id column</p></dd>
|
||||
|
||||
|
||||
<dt>date.format</dt>
|
||||
<dd><p>date format, character string. ymd/dmy/mdy. dafault is
|
||||
dmy.</p></dd>
|
||||
|
||||
|
||||
<dt>form.name</dt>
|
||||
<dd><p>manually specify form name(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and "data" is used.</p></dd>
|
||||
|
||||
|
||||
<dt>field.type</dt>
|
||||
<dd><p>manually specify field type(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and "text" is used for everything but factors,
|
||||
which wil get "radio".</p></dd>
|
||||
|
||||
|
||||
<dt>field.label</dt>
|
||||
<dd><p>manually specify field label(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and colnames(data) is used or attribute
|
||||
`field.label.attr` for haven_labelled data set (imported .dta file with
|
||||
`haven::read_dta()`).</p></dd>
|
||||
|
||||
|
||||
<dt>field.label.attr</dt>
|
||||
<dd><p>attribute name for named labels for haven_labelled
|
||||
data set (imported .dta file with `haven::read_dta()`. Default is "label"</p></dd>
|
||||
|
||||
|
||||
<dt>field.validation</dt>
|
||||
<dd><p>manually specify field validation(s). Vector of
|
||||
length 1 or ncol(data). Default is NULL and `levels()` are used for factors
|
||||
or attribute `factor.labels.attr` for haven_labelled data set (imported .dta file with
|
||||
`haven::read_dta()`).</p></dd>
|
||||
|
||||
|
||||
<dt>metadata</dt>
|
||||
<dd><p>redcap metadata headings. Default is
|
||||
REDCapCAST:::metadata_names.</p></dd>
|
||||
|
||||
|
||||
<dt>validate.time</dt>
|
||||
<dd><p>Flag to validate guessed time columns</p></dd>
|
||||
|
||||
|
||||
<dt>time.var.sel.pos</dt>
|
||||
<dd><p>Positive selection regex string passed to
|
||||
`gues_time_only_filter()` as sel.pos.</p></dd>
|
||||
|
||||
|
||||
<dt>time.var.sel.neg</dt>
|
||||
<dd><p>Negative selection regex string passed to
|
||||
`gues_time_only_filter()` as sel.neg.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list of length 2</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
|
||||
<p>This function is a natural development of the ds2dd() function. It assumes
|
||||
that the first column is the ID-column. No checks.
|
||||
Please, do always inspect the data dictionary before upload.</p>
|
||||
<p>Ensure, that the data set is formatted with as much information as possible.</p>
|
||||
<p>`field.type` can be supplied</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">redcapcast_data</span></span></span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>validate.time <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.POSIX</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> inclusion_time event_datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 12:38:49 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 10:38:57 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 NA 2024-01-18 12:49:42</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 12:01:07 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 NA 2024-01-18 12:49:58</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 NA 2024-01-18 12:50:01</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 NA 2024-01-18 12:50:05</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 NA 2024-01-18 12:50:07</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 NA 2024-01-18 12:50:09</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 20:39:19 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 NA 2024-01-18 12:50:19</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 NA 2024-01-18 12:50:22</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 NA 2024-01-18 12:50:24</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 08:50:31 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> event_datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 2024-01-18 12:49:42</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 2024-01-18 12:49:58</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 2024-01-18 12:50:01</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 2024-01-18 12:50:05</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 2024-01-18 12:50:07</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 2024-01-18 12:50:09</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 2024-01-18 12:50:19</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 2024-01-18 12:50:22</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 2024-01-18 12:50:24</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.time_only</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> inclusion_time</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 12:38:49</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 10:38:57</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 12:01:07</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 7 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 8 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 9 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 10 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 11 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 12 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 13 20:39:19</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 14 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 15 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 16 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 17 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 18 08:50:31</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 18 × 23</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> record_id redcap_event_name redcap_repeat_instrument redcap_repeat_instance</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 1 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 2 follow1 <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 2 follow1 New Event (?) 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 3 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 3 follow1 <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 3 follow2 <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 3 follow1 New Event (?) 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 3 follow1 New Event (?) 2</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 3 follow2 New Event (?) 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> 3 follow2 New Event (?) 2</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> 3 follow2 New Event (?) 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">13</span> 4 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">14</span> 4 follow2 <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">15</span> 4 follow2 New Event (?) 1</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">16</span> 4 follow2 New Event (?) 2</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">17</span> 4 follow2 New Event (?) 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">18</span> 5 inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 19 more variables: cpr <chr>, inclusion <date>, inclusion_time <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># dob <date>, age <dbl>, age_integer <dbl>, sex <chr>, cohabitation <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># hypertension <chr>, diabetes <chr>, region <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># baseline_data_start_complete <chr>, mrs_assessed <chr>, mrs_date <date>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># mrs_score <dbl>, mrs_complete <chr>, event_datetime <dttm>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># event_type <chr>, new_event_complete <chr></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 23 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> redcap_event_name data <span style="color: #BB0000;">NA</span> text redcap_event_na…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> redcap_repeat_instrument data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> redcap_repeat_instance data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> cpr data <span style="color: #BB0000;">NA</span> text cpr </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> inclusion data <span style="color: #BB0000;">NA</span> text inclusion </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> inclusion_time data <span style="color: #BB0000;">NA</span> text inclusion_time </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> dob data <span style="color: #BB0000;">NA</span> text dob </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> age data <span style="color: #BB0000;">NA</span> text age </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> age_integer data <span style="color: #BB0000;">NA</span> text age_integer </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="va">iris</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> default_trial_id sepal.length sepal.width petal.length petal.width species</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><fct></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 1 5.1 3.5 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2 4.9 3 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 3 4.7 3.2 1.3 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 4 4.6 3.1 1.5 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 5 5 3.6 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 6 5.4 3.9 1.7 0.4 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 7 4.6 3.4 1.4 0.3 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 8 5 3.4 1.5 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 9 4.4 2.9 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 10 4.9 3.1 1.5 0.1 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 140 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> default_trial_id data <span style="color: #BB0000;">NA</span> text default_trial_id</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length data <span style="color: #BB0000;">NA</span> text Sepal.Length </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width data <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length data <span style="color: #BB0000;">NA</span> text Petal.Length </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width data <span style="color: #BB0000;">NA</span> text Petal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species data <span style="color: #BB0000;">NA</span> radio Species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 32 × 12</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> default_trial_id mpg cyl disp hp drat wt qsec vs am gear</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 1 21 6 160 110 3.9 2.62 16.5 0 1 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 2 21 6 160 110 3.9 2.88 17.0 0 1 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 3 22.8 4 108 93 3.85 2.32 18.6 1 1 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 4 21.4 6 258 110 3.08 3.22 19.4 1 0 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 5 18.7 8 360 175 3.15 3.44 17.0 0 0 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 6 18.1 6 225 105 2.76 3.46 20.2 1 0 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 7 14.3 8 360 245 3.21 3.57 15.8 0 0 3</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 8 24.4 4 147. 62 3.69 3.19 20 1 0 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 9 22.8 4 141. 95 3.92 3.15 22.9 1 0 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 10 19.2 6 168. 123 3.92 3.44 18.3 1 0 4</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 22 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 1 more variable: carb <dbl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 12 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> default_trial_id data <span style="color: #BB0000;">NA</span> text default_trial_id</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> mpg data <span style="color: #BB0000;">NA</span> text mpg </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> cyl data <span style="color: #BB0000;">NA</span> text cyl </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> disp data <span style="color: #BB0000;">NA</span> text disp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> hp data <span style="color: #BB0000;">NA</span> text hp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> drat data <span style="color: #BB0000;">NA</span> text drat </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> wt data <span style="color: #BB0000;">NA</span> text wt </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> qsec data <span style="color: #BB0000;">NA</span> text qsec </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> vs data <span style="color: #BB0000;">NA</span> text vs </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> am data <span style="color: #BB0000;">NA</span> text am </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> gear data <span style="color: #BB0000;">NA</span> text gear </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> carb data <span style="color: #BB0000;">NA</span> text carb </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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||||
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||||
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|
||||
|
||||
|
||||
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||||
|
||||
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||||
</body></html>
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
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156
reference/guess_time_only_filter.html
Normal file
156
reference/guess_time_only_filter.html
Normal file
@ -0,0 +1,156 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content='This is just a try at guessing data type based on data class and column names
|
||||
hoping for a tiny bit of naming consistency. R does not include a time-only
|
||||
data format natively, so the "hms" class from `readr` is used. This
|
||||
has to be converted to character class before REDCap upload.'><title>Try at determining which are true time only variables — guess_time_only_filter • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Try at determining which are true time only variables — guess_time_only_filter"><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
|
||||
hoping for a tiny bit of naming consistency. R does not include a time-only
|
||||
data format natively, so the "hms" class from `readr` is used. This
|
||||
has to be converted to character class before REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
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<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>This is just a try at guessing data type based on data class and column names
|
||||
hoping for a tiny bit of naming consistency. R does not include a time-only
|
||||
data format natively, so the "hms" class from `readr` is used. This
|
||||
has to be converted to character class before REDCap upload.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">guess_time_only_filter</span><span class="op">(</span></span>
|
||||
<span> <span class="va">data</span>,</span>
|
||||
<span> validate <span class="op">=</span> <span class="cn">FALSE</span>,</span>
|
||||
<span> sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span>
|
||||
<span> sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span>
|
||||
<span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>validate</dt>
|
||||
<dd><p>flag to output validation data. Will output list.</p></dd>
|
||||
|
||||
|
||||
<dt>sel.pos</dt>
|
||||
<dd><p>Positive selection regex string</p></dd>
|
||||
|
||||
|
||||
<dt>sel.neg</dt>
|
||||
<dd><p>Negative selection regex string</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector or list depending on `validate` flag.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">redcapcast_data</span></span></span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">guess_time_only_filter</span><span class="op">(</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "inclusion_time"</span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">guess_time_only_filter</span><span class="op">(</span>validate <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply</a></span><span class="op">(</span><span class="va">head</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.POSIX</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> inclusion_time event_datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 12:38:49 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 10:38:57 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 NA 2024-01-18 12:49:42</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 12:01:07 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 NA <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> event_datetime</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 2024-01-18 12:49:42</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 <NA></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $is.time_only</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> inclusion_time</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 1 12:38:49</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 10:38:57</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 3 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 4 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 5 12:01:07</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 6 NA</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
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</nav></aside></div>
|
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<footer><div class="pkgdown-footer-left">
|
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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|
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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||||
</body></html>
|
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|
||||
101
reference/hms2character.html
Normal file
101
reference/hms2character.html
Normal file
@ -0,0 +1,101 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content='Change "hms" to "character" for REDCap upload.'><title>Change "hms" to "character" for REDCap upload. — hms2character • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Change " hms to for redcap upload. hms2character><meta property="og:description" content='Change "hms" to "character" for REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<![endif]--></head><body>
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<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
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||||
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
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||||
<a class="nav-link" href="../reference/index.html">Reference</a>
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<main id="main" class="col-md-9"><div class="page-header">
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||||
<img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>hms2character.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Change "hms" to "character" for REDCap upload.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">hms2character</span><span class="op">(</span><span class="va">data</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>data.frame or tibble</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">redcapcast_data</span></span></span>
|
||||
<span class="r-in"><span><span class="co">## data |> time_only_correction() |> hms2character()</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
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</div>
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||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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||||
</footer></div>
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|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
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||||
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||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -79,7 +79,12 @@
|
||||
|
||||
<code><a href="ds2dd.html">ds2dd()</a></code>
|
||||
</dt>
|
||||
<dd>Data set to data dictionary function</dd>
|
||||
<dd>(DEPRECATED) Data set to data dictionary function</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code>
|
||||
</dt>
|
||||
<dd>Extract data from stata file for data dictionary</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="easy_redcap.html">easy_redcap()</a></code>
|
||||
@ -97,6 +102,21 @@
|
||||
<dd>Retrieve project API key if stored, if not, set and retrieve</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code>
|
||||
</dt>
|
||||
<dd>Try at determining which are true time only variables</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="hms2character.html">hms2character()</a></code>
|
||||
</dt>
|
||||
<dd>Change "hms" to "character" for REDCap upload.</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="mark_complete.html">mark_complete()</a></code>
|
||||
</dt>
|
||||
<dd>Completion marking based on completed upload</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="match_fields_to_form.html">match_fields_to_form()</a></code>
|
||||
</dt>
|
||||
<dd>Match fields to forms</dd>
|
||||
@ -135,6 +155,12 @@
|
||||
<code><a href="strsplitx.html">strsplitx()</a></code>
|
||||
</dt>
|
||||
<dd>Extended string splitting</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="time_only_correction.html">time_only_correction()</a></code>
|
||||
</dt>
|
||||
<dd>Correction based on time_only_filter function. Introduces new class for easier
|
||||
validation labelling.</dd>
|
||||
</dl></div>
|
||||
</main></div>
|
||||
|
||||
|
||||
99
reference/mark_complete.html
Normal file
99
reference/mark_complete.html
Normal file
@ -0,0 +1,99 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Completion marking based on completed upload"><title>Completion marking based on completed upload — mark_complete • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Completion marking based on completed upload — mark_complete"><meta property="og:description" content="Completion marking based on completed upload"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]--></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item">
|
||||
<a class="nav-link" href="../reference/index.html">Reference</a>
|
||||
</li>
|
||||
<li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
||||
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../news/index.html">Changelog</a>
|
||||
</li>
|
||||
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>mark_complete.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Completion marking based on completed upload</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">mark_complete</span><span class="op">(</span><span class="va">upload</span>, <span class="va">ls</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>upload</dt>
|
||||
<dd><p>output list from `REDCapR::redcap_write()`</p></dd>
|
||||
|
||||
|
||||
<dt>ls</dt>
|
||||
<dd><p>output list from `ds2dd_detailed()`</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list with `REDCapR::redcap_write()` results</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -18,7 +18,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -12,7 +12,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -12,7 +12,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
@ -81,10 +81,13 @@ Contains only synthetic data.</p>
|
||||
<dd><p>CPR number, character</p></dd>
|
||||
|
||||
<dt>inclusion</dt>
|
||||
<dd><p>Inclusion date, date</p></dd>
|
||||
<dd><p>Inclusion date, Date</p></dd>
|
||||
|
||||
<dt>inclusion_time</dt>
|
||||
<dd><p>Inclusion time, hms</p></dd>
|
||||
|
||||
<dt>dob</dt>
|
||||
<dd><p>Date of birth, date</p></dd>
|
||||
<dd><p>Date of birth, Date</p></dd>
|
||||
|
||||
<dt>age</dt>
|
||||
<dd><p>Age decimal, numeric</p></dd>
|
||||
@ -114,16 +117,16 @@ Contains only synthetic data.</p>
|
||||
<dd><p>mRS Assessed, character</p></dd>
|
||||
|
||||
<dt>mrs_date</dt>
|
||||
<dd><p>Assesment date, date</p></dd>
|
||||
<dd><p>Assesment date, Date</p></dd>
|
||||
|
||||
<dt>mrs_score</dt>
|
||||
<dd><p>Score, numeric</p></dd>
|
||||
<dd><p>Categorical score, numeric</p></dd>
|
||||
|
||||
<dt>mrs_complete</dt>
|
||||
<dd><p>Complete, numeric</p></dd>
|
||||
|
||||
<dt>event_date</dt>
|
||||
<dd><p>Event date, date</p></dd>
|
||||
<dt>event_datetime</dt>
|
||||
<dd><p>Event datetime, POSIXct</p></dd>
|
||||
|
||||
<dt>event_type</dt>
|
||||
<dd><p>Event type, character</p></dd>
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -10,7 +10,7 @@
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
@ -12,7 +12,7 @@ easing the split around the defined delimiter, see example."><meta property="og:
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.2</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
|
||||
111
reference/time_only_correction.html
Normal file
111
reference/time_only_correction.html
Normal file
@ -0,0 +1,111 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content='Dependens on the data class "hms" introduced with
|
||||
`guess_time_only_filter()` and converts these'><title>Correction based on time_only_filter function. Introduces new class for easier
|
||||
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<img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function. Introduces new class for easier
|
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validation labelling.</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<div class="d-none name"><code>time_only_correction.Rd</code></div>
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<div class="ref-description section level2">
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<p>Dependens on the data class "hms" introduced with
|
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`guess_time_only_filter()` and converts these</p>
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</div>
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<div class="section level2">
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">time_only_correction</span><span class="op">(</span><span class="va">data</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>...</dt>
|
||||
<dd><p>arguments passed on to `guess_time_only_filter()`</p></dd>
|
||||
|
||||
</dl></div>
|
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<div class="section level2">
|
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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||||
|
||||
<p>tibble</p>
|
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">redcapcast_data</span></span></span>
|
||||
<span class="r-in"><span><span class="co">## data |> time_only_correction()</span></span></span>
|
||||
</code></pre></div>
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<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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15
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15
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@ -33,6 +33,9 @@
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html</loc>
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</url>
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html</loc>
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</url>
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html</loc>
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</url>
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@ -42,9 +45,18 @@
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html</loc>
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</url>
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html</loc>
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<url>
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<loc>https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html</loc>
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@ -69,4 +81,7 @@
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