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<!-- Generated by pkgdown: do not edit by hand --> < html lang = "en" > < head > < meta http-equiv = "Content-Type" content = "text/html; charset=UTF-8" > < meta charset = "utf-8" > < meta http-equiv = "X-UA-Compatible" content = "IE=edge" > < meta name = "viewport" content = "width=device-width, initial-scale=1, shrink-to-fit=no" > < title > Package index • REDCapCAST< / title > <!-- favicons --> < link rel = "icon" type = "image/png" sizes = "16x16" href = "../favicon-16x16.png" > < link rel = "icon" type = "image/png" sizes = "32x32" href = "../favicon-32x32.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "180x180" href = "../apple-touch-icon.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "120x120" href = "../apple-touch-icon-120x120.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "76x76" href = "../apple-touch-icon-76x76.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "60x60" href = "../apple-touch-icon-60x60.png" > < script src = "../deps/jquery-3.6.0/jquery-3.6.0.min.js" > < / script > < meta name = "viewport" content = "width=device-width, initial-scale=1, shrink-to-fit=no" > < link href = "../deps/bootstrap-5.3.1/bootstrap.min.css" rel = "stylesheet" > < script src = "../deps/bootstrap-5.3.1/bootstrap.bundle.min.js" > < / script > < link href = "../deps/font-awesome-6.5.2/css/all.min.css" rel = "stylesheet" > < link href = "../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel = "stylesheet" > < script src = "../deps/headroom-0.11.0/headroom.min.js" > < / script > < script src = "../deps/headroom-0.11.0/jQuery.headroom.min.js" > < / script > < script src = "../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js" > < / script > < script src = "../deps/clipboard.js-2.0.11/clipboard.min.js" > < / script > < script src = "../deps/search-1.0.0/autocomplete.jquery.min.js" > < / script > < script src = "../deps/search-1.0.0/fuse.min.js" > < / script > < script src = "../deps/search-1.0.0/mark.min.js" > < / script > <!-- pkgdown --> < script src = "../pkgdown.js" > < / script > < meta property = "og:title" content = "Package index" > < meta property = "og:image" content = "https://agdamsbo.github.io/REDCapCAST/logo.png" > < / head > < body >
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< a href = "#main" class = "visually-hidden-focusable" > Skip to contents< / a >
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< ul class = "navbar-nav me-auto" > < li class = "nav-item" > < a class = "nav-link" href = "../articles/REDCapCAST.html" > Get started< / a > < / li >
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< ul class = "dropdown-menu" aria-labelledby = "dropdown-articles" > < li > < a class = "dropdown-item" href = "../articles/Database-creation.html" > Database-creation< / a > < / li >
< li > < a class = "dropdown-item" href = "../articles/Shiny-app.html" > Shiny-app< / a > < / li >
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< input class = "form-control" type = "search" name = "search-input" id = "search-input" autocomplete = "off" aria-label = "Search site" placeholder = "Search for" data-search-index = "../search.json" > < / form > < / li >
< li class = "nav-item" > < a class = "external-link nav-link" href = "https://github.com/agdamsbo/REDCapCAST/" aria-label = "GitHub" > < span class = "fa fab fa-github fa-lg" > < / span > < / a > < / li >
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< img src = "../logo.png" class = "logo" alt = "" > < h1 > Package index< / h1 >
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< / div >
< div class = "section level2" >
< h2 id = "all-functions" > All functions< a class = "anchor" aria-label = "anchor" href = "#all-functions" > < / a > < / h2 >
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< / div > < div class = "section level2" >
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< dl > < dt >
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< code > < a href = "REDCap_split.html" > REDCap_split()< / a > < / code >
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< / dt >
< dd > Split REDCap repeating instruments table into multiple tables< / dd >
< / dl > < dl > < dt >
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< code > < a href = "all_na.html" > all_na()< / a > < / code >
< / dt >
< dd > Check if vector is all NA< / dd >
< / dl > < dl > < dt >
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< code > < a href = "as_factor.html" > as_factor()< / a > < / code >
< / dt >
< dd > Convert labelled vectors to factors while preserving attributes< / dd >
< / dl > < dl > < dt >
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< code > < a href = "case_match_regex_list.html" > case_match_regex_list()< / a > < / code >
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< / dt >
< dd > List-base regex case_when< / dd >
< / dl > < dl > < dt >
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< code > < a href = "cast_data_overview.html" > cast_data_overview()< / a > < / code >
< / dt >
< dd > Overview of REDCapCAST data for shiny< / dd >
< / dl > < dl > < dt >
< code > < a href = "cast_meta_overview.html" > cast_meta_overview()< / a > < / code >
< / dt >
< dd > Overview of REDCapCAST meta data for shiny< / dd >
< / dl > < dl > < dt >
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< code > < a href = "char2choice.html" > char2choice()< / a > < / code >
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< / dt >
< dd > Simple function to generate REDCap choices from character vector< / dd >
< / dl > < dl > < dt >
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< code > < a href = "char2cond.html" > char2cond()< / a > < / code >
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< / dt >
< dd > Simple function to generate REDCap branching logic from character vector< / dd >
< / dl > < dl > < dt >
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< code > < a href = "clean_redcap_name.html" > clean_redcap_name()< / a > < / code >
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< / dt >
< dd > clean_redcap_name< / dd >
< / dl > < dl > < dt >
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< code > < a href = "compact_vec.html" > compact_vec()< / a > < / code >
< / dt >
< dd > Compacting a vector of any length with or without names< / dd >
< / dl > < dl > < dt >
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< code > < a href = "create_html_table.html" > create_html_table()< / a > < / code >
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< / dt >
< dd > Create two-column HTML table for data piping in REDCap instruments< / dd >
< / dl > < dl > < dt >
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< code > < a href = "create_instrument_meta.html" > create_instrument_meta()< / a > < / code >
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< / dt >
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< dd > DEPRICATED Create zips file with necessary content based on data set< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "d2w.html" > d2w()< / a > < / code >
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< / dt >
< dd > Convert single digits to words< / dd >
< / dl > < dl > < dt >
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< code > < a href = "doc2dd.html" > doc2dd()< / a > < / code >
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< / dt >
< dd > Doc table to data dictionary - EARLY, DOCS MISSING< / dd >
< / dl > < dl > < dt >
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< code > < a href = "ds2dd.html" > ds2dd()< / a > < / code >
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< / dt >
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< dd > (DEPRECATED) Data set to data dictionary function< / dd >
< / dl > < dl > < dt >
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< code > < a href = "ds2dd_detailed.html" > ds2dd_detailed()< / a > < / code >
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< / dt >
< dd > Extract data from stata file for data dictionary< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "easy_redcap.html" > easy_redcap()< / a > < / code >
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< / dt >
< dd > Secure API key storage and data acquisition in one< / dd >
< / dl > < dl > < dt >
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< code > < a href = "export_redcap_instrument.html" > export_redcap_instrument()< / a > < / code >
< / dt >
< dd > Creates zip-file with necessary content to manually add instrument to database< / dd >
< / dl > < dl > < dt >
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< code > < a href = "fct2num.html" > fct2num()< / a > < / code >
< / dt >
< dd > Allows conversion of factor to numeric values preserving original levels< / dd >
< / dl > < dl > < dt >
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< code > < a href = "file_extension.html" > file_extension()< / a > < / code >
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< / dt >
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< dd > DEPRECATED Helper to import files correctly< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "focused_metadata.html" > focused_metadata()< / a > < / code >
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< / dt >
< dd > focused_metadata< / dd >
< / dl > < dl > < dt >
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< code > < a href = "format_subheader.html" > format_subheader()< / a > < / code >
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< / dt >
< dd > Sub-header formatting wrapper< / dd >
< / dl > < dl > < dt >
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< code > < a href = "get_api_key.html" > get_api_key()< / a > < / code >
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< / dt >
< dd > Retrieve project API key if stored, if not, set and retrieve< / dd >
< / dl > < dl > < dt >
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< code > < a href = "get_attr.html" > get_attr()< / a > < / code >
< / dt >
< dd > Extract attribute. Returns NA if none< / dd >
< / dl > < dl > < dt >
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< code > < a href = "get_id_name.html" > get_id_name()< / a > < / code >
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< / dt >
< dd > Get the id name< / dd >
< / dl > < dl > < dt >
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< code > < a href = "guess_time_only.html" > guess_time_only()< / a > < / code >
< / dt >
< dd > Guess time variables based on naming pattern< / dd >
< / dl > < dl > < dt >
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< code > < a href = "guess_time_only_filter.html" > guess_time_only_filter()< / a > < / code >
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< / dt >
< dd > Try at determining which are true time only variables< / dd >
< / dl > < dl > < dt >
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< code > < a href = "haven_all_levels.html" > haven_all_levels()< / a > < / code >
< / dt >
< dd > Finish incomplete haven attributes substituting missings with values< / dd >
< / dl > < dl > < dt >
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< code > < a href = "hms2character.html" > hms2character()< / a > < / code >
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< / dt >
< dd > Change "hms" to "character" for REDCap upload.< / dd >
< / dl > < dl > < dt >
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< code > < a href = "html_tag_wrap.html" > html_tag_wrap()< / a > < / code >
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< / dt >
< dd > Simple html tag wrapping for REDCap text formatting< / dd >
< / dl > < dl > < dt >
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< code > < a href = "is_missing.html" > is_missing()< / a > < / code >
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< / dt >
< dd > Multi missing check< / dd >
< / dl > < dl > < dt >
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< code > < a href = "is_repeated_longitudinal.html" > is_repeated_longitudinal()< / a > < / code >
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< / dt >
< dd > Test if repeatable or longitudinal< / dd >
< / dl > < dl > < dt >
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< code > < a href = "mark_complete.html" > mark_complete()< / a > < / code >
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< / dt >
< dd > Completion marking based on completed upload< / dd >
< / dl > < dl > < dt >
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< code > < a href = "match_fields_to_form.html" > match_fields_to_form()< / a > < / code >
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< / dt >
< dd > Match fields to forms< / dd >
< / dl > < dl > < dt >
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< code > < a href = "mtcars_redcap.html" > mtcars_redcap< / a > < / code >
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< / dt >
< dd > mtcars dataset slightly modified to use for Shiny app upload demonstration< / dd >
< / dl > < dl > < dt >
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< code > < a href = "named_levels.html" > named_levels()< / a > < / code >
< / dt >
< dd > Get named vector of factor levels and values< / dd >
< / dl > < dl > < dt >
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< code > < a href = "nav_bar_page.html" > nav_bar_page()< / a > < / code >
< / dt >
< dd > Nav_bar defining function for shiny ui< / dd >
< / dl > < dl > < dt >
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< code > < a href = "numchar2fct.html" > numchar2fct()< / a > < / code >
< / dt >
< dd > Applying var2fct across data set< / dd >
< / dl > < dl > < dt >
< code > < a href = "parse_data.html" > parse_data()< / a > < / code >
< / dt >
< dd > Helper to auto-parse un-formatted data with haven and readr< / dd >
< / dl > < dl > < dt >
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< code > < a href = "possibly_roman.html" > possibly_roman()< / a > < / code >
< / dt >
< dd > Test if vector can be interpreted as roman numerals< / dd >
< / dl > < dl > < dt >
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< code > < a href = "process_user_input.html" > process_user_input()< / a > < / code >
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< / dt >
< dd > User input processing< / dd >
< / dl > < dl > < dt >
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< code > < a href = "process_user_input.character.html" > process_user_input(< i > < character> < / i > )< / a > < / code >
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< / dt >
< dd > User input processing character< / dd >
< / dl > < dl > < dt >
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< code > < a href = "process_user_input.data.frame.html" > process_user_input(< i > < data.frame> < / i > )< / a > < / code >
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< / dt >
< dd > User input processing data.frame< / dd >
< / dl > < dl > < dt >
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< code > < a href = "process_user_input.default.html" > process_user_input(< i > < default> < / i > )< / a > < / code >
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< / dt >
< dd > User input processing default< / dd >
< / dl > < dl > < dt >
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< code > < a href = "process_user_input.response.html" > process_user_input(< i > < response> < / i > )< / a > < / code >
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< / dt >
< dd > User input processing response< / dd >
< / dl > < dl > < dt >
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< code > < a href = "read_input.html" > read_input()< / a > < / code >
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< / dt >
< dd > Flexible file import based on extension< / dd >
< / dl > < dl > < dt >
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< code > < a href = "read_redcap_instrument.html" > read_redcap_instrument()< / a > < / code >
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< / dt >
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< dd > Convenience function to download complete instrument, using token storage in keyring.< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "read_redcap_tables.html" > read_redcap_tables()< / a > < / code >
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< / dt >
< dd > Download REDCap data< / dd >
< / dl > < dl > < dt >
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< code > < a href = "redcap_wider.html" > redcap_wider()< / a > < / code >
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< / dt >
< dd > Redcap Wider< / dd >
< / dl > < dl > < dt >
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< code > < a href = "redcapcast_data.html" > redcapcast_data< / a > < / code >
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< / dt >
< dd > Data set for demonstration< / dd >
< / dl > < dl > < dt >
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< code > < a href = "redcapcast_meta.html" > redcapcast_meta< / a > < / code >
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< / dt >
< dd > REDCap metadata from data base< / dd >
< / dl > < dl > < dt >
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< code > < a href = "replace_curly_quote.html" > replace_curly_quote()< / a > < / code >
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< / dt >
< dd > Replace curly apostrophes and quotes from word< / dd >
< / dl > < dl > < dt >
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< code > < a href = "sanitize_split.html" > sanitize_split()< / a > < / code >
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< / dt >
< dd > Sanitize list of data frames< / dd >
< / dl > < dl > < dt >
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< code > < a href = "set_attr.html" > set_attr()< / a > < / code >
< / dt >
< dd > Set attributes for named attribute. Appends if attr is NULL< / dd >
< / dl > < dl > < dt >
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< code > < a href = "shiny_cast.html" > shiny_cast()< / a > < / code >
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< / dt >
< dd > Launch the included Shiny-app for database casting and upload< / dd >
< / dl > < dl > < dt >
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< code > < a href = "split_non_repeating_forms.html" > split_non_repeating_forms()< / a > < / code >
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< / dt >
< dd > Split a data frame into separate tables for each form< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "strsplitx.html" > strsplitx()< / a > < / code >
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< / dt >
< dd > Extended string splitting< / dd >
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< / dl > < dl > < dt >
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< code > < a href = "time_only_correction.html" > time_only_correction()< / a > < / code >
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< / dt >
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< dd > Correction based on time_only_filter function< / dd >
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< / dl > < dl > < dt >
< code > < a href = "var2fct.html" > var2fct()< / a > < / code >
< / dt >
< dd > Convert vector to factor based on threshold of number of unique levels< / dd >
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< / dl > < dl > < dt >
< code > < a href = "vec2choice.html" > vec2choice()< / a > < / code >
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< dd > Named vector to REDCap choices (`wrapping compact_vec()`)< / dd >
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< p > Developed by Andreas Gammelgaard Damsbo, Paul Egeler.< / p >
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< div class = "pkgdown-footer-right" >
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< p > Site built with < a href = "https://pkgdown.r-lib.org/" class = "external-link" > pkgdown< / a > 2.1.1.< / p >
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< / body > < / html >
