2023-06-30 10:56:53 +02:00
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2024-05-23 11:55:51 +02:00
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Function reference • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Function reference"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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2023-06-30 10:56:53 +02:00
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2024-04-12 12:31:46 +02:00
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2024-06-07 10:46:09 +02:00
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
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2023-06-30 10:56:53 +02:00
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2024-02-27 12:56:38 +01:00
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2023-06-30 10:56:53 +02:00
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2024-02-27 12:56:38 +01:00
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2023-06-30 10:56:53 +02:00
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Function reference</h1>
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</div>
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<div class="section level2">
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<h2 id="all-functions">All functions<a class="anchor" aria-label="anchor" href="#all-functions"></a></h2>
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</div><div id="" class="section level2">
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<dl><dt>
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<code><a href="REDCap_split.html">REDCap_split()</a></code>
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</dt>
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<dd>Split REDCap repeating instruments table into multiple tables</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
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</dt>
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<dd>List-base regex case_when</dd>
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</dl><dl><dt>
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<code><a href="char2choice.html">char2choice()</a></code>
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</dt>
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<dd>Simple function to generate REDCap choices from character vector</dd>
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</dl><dl><dt>
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<code><a href="char2cond.html">char2cond()</a></code>
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</dt>
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<dd>Simple function to generate REDCap branching logic from character vector</dd>
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
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</dt>
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<dd>clean_redcap_name</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="create_html_table.html">create_html_table()</a></code>
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</dt>
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<dd>Create two-column HTML table for data piping in REDCap instruments</dd>
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</dl><dl><dt>
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2024-04-12 12:31:46 +02:00
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<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
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</dt>
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<dd>Create zips file with necessary content based on data set</dd>
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</dl><dl><dt>
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2023-07-04 16:05:51 +02:00
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<code><a href="d2w.html">d2w()</a></code>
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</dt>
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<dd>Convert single digits to words</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="doc2dd.html">doc2dd()</a></code>
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</dt>
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<dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd>
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</dl><dl><dt>
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2023-07-04 16:05:51 +02:00
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<code><a href="ds2dd.html">ds2dd()</a></code>
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</dt>
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2024-01-18 15:08:43 +01:00
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<dd>(DEPRECATED) Data set to data dictionary function</dd>
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</dl><dl><dt>
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<code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code>
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</dt>
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<dd>Extract data from stata file for data dictionary</dd>
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2023-07-04 16:05:51 +02:00
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</dl><dl><dt>
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2023-12-20 09:33:52 +01:00
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<code><a href="easy_redcap.html">easy_redcap()</a></code>
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</dt>
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<dd>Secure API key storage and data acquisition in one</dd>
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</dl><dl><dt>
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2024-02-26 21:11:14 +01:00
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<code><a href="file_extension.html">file_extension()</a></code>
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</dt>
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<dd>Helper to import files correctly</dd>
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="focused_metadata.html">focused_metadata()</a></code>
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</dt>
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<dd>focused_metadata</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="format_subheader.html">format_subheader()</a></code>
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</dt>
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<dd>Sub-header formatting wrapper</dd>
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</dl><dl><dt>
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2023-12-20 09:33:52 +01:00
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<code><a href="get_api_key.html">get_api_key()</a></code>
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</dt>
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<dd>Retrieve project API key if stored, if not, set and retrieve</dd>
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</dl><dl><dt>
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2024-02-06 14:27:54 +01:00
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<code><a href="get_id_name.html">get_id_name()</a></code>
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</dt>
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<dd>Get the id name</dd>
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</dl><dl><dt>
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2024-01-18 15:08:43 +01:00
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<code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code>
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</dt>
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<dd>Try at determining which are true time only variables</dd>
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</dl><dl><dt>
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<code><a href="hms2character.html">hms2character()</a></code>
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</dt>
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<dd>Change "hms" to "character" for REDCap upload.</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
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</dt>
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<dd>Simple html tag wrapping for REDCap text formatting</dd>
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</dl><dl><dt>
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<code><a href="is_missing.html">is_missing()</a></code>
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</dt>
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<dd>Multi missing check</dd>
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</dl><dl><dt>
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2024-02-07 10:20:47 +01:00
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<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
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2024-02-06 14:27:54 +01:00
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</dt>
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<dd>Test if repeatable or longitudinal</dd>
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</dl><dl><dt>
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2024-01-18 15:08:43 +01:00
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<code><a href="mark_complete.html">mark_complete()</a></code>
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</dt>
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<dd>Completion marking based on completed upload</dd>
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="match_fields_to_form.html">match_fields_to_form()</a></code>
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</dt>
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<dd>Match fields to forms</dd>
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</dl><dl><dt>
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2024-02-27 12:56:38 +01:00
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<code><a href="mtcars_redcap.html">mtcars_redcap</a></code>
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</dt>
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<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
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</dl><dl><dt>
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2024-05-23 11:55:51 +02:00
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<code><a href="process_user_input.html">process_user_input()</a></code>
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</dt>
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<dd>User input processing</dd>
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</dl><dl><dt>
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<code><a href="process_user_input.character.html">process_user_input(<i><character></i>)</a></code>
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</dt>
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<dd>User input processing character</dd>
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</dl><dl><dt>
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<code><a href="process_user_input.data.frame.html">process_user_input(<i><data.frame></i>)</a></code>
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</dt>
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<dd>User input processing data.frame</dd>
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</dl><dl><dt>
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<code><a href="process_user_input.default.html">process_user_input(<i><default></i>)</a></code>
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</dt>
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<dd>User input processing default</dd>
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</dl><dl><dt>
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<code><a href="process_user_input.response.html">process_user_input(<i><response></i>)</a></code>
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</dt>
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<dd>User input processing response</dd>
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</dl><dl><dt>
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2024-02-26 21:11:14 +01:00
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<code><a href="read_input.html">read_input()</a></code>
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</dt>
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<dd>Flexible file import based on extension</dd>
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</dl><dl><dt>
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2024-01-29 12:52:58 +01:00
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<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
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</dt>
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2024-04-12 12:31:46 +02:00
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<dd>Convenience function to download complete instrument, using token storage in keyring.</dd>
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2024-01-29 12:52:58 +01:00
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
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</dt>
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<dd>Download REDCap data</dd>
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</dl><dl><dt>
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<code><a href="redcap_wider.html">redcap_wider()</a></code>
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</dt>
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<dd>Redcap Wider</dd>
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</dl><dl><dt>
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<code><a href="redcapcast_data.html">redcapcast_data</a></code>
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</dt>
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<dd>Data set for demonstration</dd>
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</dl><dl><dt>
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<code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
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</dt>
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<dd>REDCap metadata from data base</dd>
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</dl><dl><dt>
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2024-06-07 10:46:09 +02:00
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<code><a href="replace_curly_quote.html">replace_curly_quote()</a></code>
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</dt>
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<dd>Replace curly apostrophes and quotes from word</dd>
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="sanitize_split.html">sanitize_split()</a></code>
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</dt>
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<dd>Sanitize list of data frames</dd>
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</dl><dl><dt>
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2024-02-26 21:11:14 +01:00
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<code><a href="server_factory.html">server_factory()</a></code>
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</dt>
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<dd>Shiny server factory</dd>
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</dl><dl><dt>
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<code><a href="shiny_cast.html">shiny_cast()</a></code>
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</dt>
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<dd>Launch the included Shiny-app for database casting and upload</dd>
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</dl><dl><dt>
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2023-06-30 10:56:53 +02:00
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<code><a href="split_non_repeating_forms.html">split_non_repeating_forms()</a></code>
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</dt>
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<dd>Split a data frame into separate tables for each form</dd>
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2023-07-04 16:05:51 +02:00
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</dl><dl><dt>
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<code><a href="strsplitx.html">strsplitx()</a></code>
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</dt>
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<dd>Extended string splitting</dd>
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2024-01-18 15:08:43 +01:00
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</dl><dl><dt>
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<code><a href="time_only_correction.html">time_only_correction()</a></code>
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</dt>
|
2024-02-27 13:31:38 +01:00
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<dd>Correction based on time_only_filter function</dd>
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2024-02-26 21:11:14 +01:00
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</dl><dl><dt>
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<code><a href="ui_factory.html">ui_factory()</a></code>
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</dt>
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<dd>UI factory for shiny app</dd>
|
2023-06-30 10:56:53 +02:00
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</dl></div>
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</main></div>
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<footer><div class="pkgdown-footer-left">
|
2024-05-23 11:55:51 +02:00
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<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
2023-06-30 10:56:53 +02:00
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</div>
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<div class="pkgdown-footer-right">
|
2024-05-23 11:55:51 +02:00
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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2023-06-30 10:56:53 +02:00
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</div>
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</footer></div>
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</body></html>
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