2023-06-30 10:04:32 +02:00
<!DOCTYPE html>
2024-10-10 14:22:20 +02:00
<!-- Generated by pkgdown: do not edit by hand --> < html lang = "en" > < head > < meta http-equiv = "Content-Type" content = "text/html; charset=UTF-8" > < meta charset = "utf-8" > < meta http-equiv = "X-UA-Compatible" content = "IE=edge" > < meta name = "viewport" content = "width=device-width, initial-scale=1, shrink-to-fit=no" > < title > Confidence interval plot with point estimate — ci_plot • stRoke< / title > <!-- favicons --> < link rel = "icon" type = "image/png" sizes = "16x16" href = "../favicon-16x16.png" > < link rel = "icon" type = "image/png" sizes = "32x32" href = "../favicon-32x32.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "180x180" href = "../apple-touch-icon.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "120x120" href = "../apple-touch-icon-120x120.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "76x76" href = "../apple-touch-icon-76x76.png" > < link rel = "apple-touch-icon" type = "image/png" sizes = "60x60" href = "../apple-touch-icon-60x60.png" > < script src = "../deps/jquery-3.6.0/jquery-3.6.0.min.js" > < / script > < meta name = "viewport" content = "width=device-width, initial-scale=1, shrink-to-fit=no" > < link href = "../deps/bootstrap-5.3.1/bootstrap.min.css" rel = "stylesheet" > < script src = "../deps/bootstrap-5.3.1/bootstrap.bundle.min.js" > < / script > < link href = "../deps/font-awesome-6.4.2/css/all.min.css" rel = "stylesheet" > < link href = "../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel = "stylesheet" > < script src = "../deps/headroom-0.11.0/headroom.min.js" > < / script > < script src = "../deps/headroom-0.11.0/jQuery.headroom.min.js" > < / script > < script src = "../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js" > < / script > < script src = "../deps/clipboard.js-2.0.11/clipboard.min.js" > < / script > < script src = "../deps/search-1.0.0/autocomplete.jquery.min.js" > < / script > < script src = "../deps/search-1.0.0/fuse.min.js" > < / script > < script src = "../deps/search-1.0.0/mark.min.js" > < / script > <!-- pkgdown --> < script src = "../pkgdown.js" > < / script > < meta property = "og:title" content = "Confidence interval plot with point estimate — ci_plot" > < meta name = "description" content = 'Horizontal forest plot of point estimate with confidence intervals .
2023-06-30 10:04:32 +02:00
Includes dichotomous or olr, depending on number of levels in "x".
2024-10-10 14:22:20 +02:00
Title and axis labels can be added to the ggplot afterwards.'>< meta property = "og:description" content = 'Horizontal forest plot of point estimate with confidence intervals .
2023-06-30 10:04:32 +02:00
Includes dichotomous or olr, depending on number of levels in "x".
2024-10-10 14:22:20 +02:00
Title and axis labels can be added to the ggplot afterwards.'>< meta property = "og:image" content = "https://agdamsbo.github.io/stRoke/logo.png" > < / head > < body >
2023-06-30 10:04:32 +02:00
< a href = "#main" class = "visually-hidden-focusable" > Skip to contents< / a >
2024-10-10 14:22:20 +02:00
< nav class = "navbar navbar-expand-lg fixed-top bg-light" data-bs-theme = "light" aria-label = "Site navigation" > < div class = "container" >
2023-06-30 10:04:32 +02:00
< a class = "navbar-brand me-2" href = "../index.html" > stRoke< / a >
2024-10-10 14:22:20 +02:00
< small class = "nav-text text-muted me-auto" data-bs-toggle = "tooltip" data-bs-placement = "bottom" title = "" > 24.10.1< / small >
2023-06-30 10:04:32 +02:00
< button class = "navbar-toggler" type = "button" data-bs-toggle = "collapse" data-bs-target = "#navbar" aria-controls = "navbar" aria-expanded = "false" aria-label = "Toggle navigation" >
< span class = "navbar-toggler-icon" > < / span >
< / button >
< div id = "navbar" class = "collapse navbar-collapse ms-3" >
2024-10-10 14:22:20 +02:00
< ul class = "navbar-nav me-auto" > < li class = "active nav-item" > < a class = "nav-link" href = "../reference/index.html" > Reference< / a > < / li >
2023-06-30 10:04:32 +02:00
< li class = "nav-item dropdown" >
2024-10-10 14:22:20 +02:00
< button class = "nav-link dropdown-toggle" type = "button" id = "dropdown-articles" data-bs-toggle = "dropdown" aria-expanded = "false" aria-haspopup = "true" > Articles< / button >
< ul class = "dropdown-menu" aria-labelledby = "dropdown-articles" > < li > < a class = "dropdown-item" href = "../articles/toolbox.html" > Toolbox< / a > < / li >
< / ul > < / li >
< li class = "nav-item" > < a class = "nav-link" href = "../news/index.html" > Changelog< / a > < / li >
< / ul > < ul class = "navbar-nav" > < li class = "nav-item" > < form class = "form-inline" role = "search" >
< input class = "form-control" type = "search" name = "search-input" id = "search-input" autocomplete = "off" aria-label = "Search site" placeholder = "Search for" data-search-index = "../search.json" > < / form > < / li >
< li class = "nav-item" > < a class = "external-link nav-link" href = "https://github.com/agdamsbo/stRoke/" aria-label = "GitHub" > < span class = "fa fab fa-github fa-lg" > < / span > < / a > < / li >
2023-06-30 10:04:32 +02:00
< / ul > < / div >
2024-10-10 14:22:20 +02:00
2023-06-30 10:04:32 +02:00
< / div >
< / nav > < div class = "container template-reference-topic" >
< div class = "row" >
< main id = "main" class = "col-md-9" > < div class = "page-header" >
< img src = "../logo.png" class = "logo" alt = "" > < h1 > Confidence interval plot with point estimate< / h1 >
2024-10-25 09:41:37 +02:00
< small class = "dont-index" > Source: < a href = "https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/ci_plot.R" class = "external-link" > < code > R/ci_plot.R< / code > < / a > < / small >
2023-06-30 10:04:32 +02:00
< div class = "d-none name" > < code > ci_plot.Rd< / code > < / div >
< / div >
< div class = "ref-description section level2" >
< p > Horizontal forest plot of point estimate with confidence intervals.
Includes dichotomous or olr, depending on number of levels in "x".
Title and axis labels can be added to the ggplot afterwards.< / p >
< / div >
< div class = "section level2" >
< h2 id = "ref-usage" > Usage< a class = "anchor" aria-label = "anchor" href = "#ref-usage" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span > < span class = "fu" > ci_plot< / span > < span class = "op" > (< / span > < / span >
< span > < span class = "va" > ds< / span > ,< / span >
< span > x < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > y < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > vars < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > dec < span class = "op" > =< / span > < span class = "fl" > 3< / span > ,< / span >
< span > lbls < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > title < span class = "op" > =< / span > < span class = "cn" > NULL< / span > ,< / span >
< span > method < span class = "op" > =< / span > < span class = "st" > "auto"< / span > < / span >
< span > < span class = "op" > )< / span > < / span > < / code > < / pre > < / div >
< / div >
< div class = "section level2" >
< h2 id = "arguments" > Arguments< a class = "anchor" aria-label = "anchor" href = "#arguments" > < / a > < / h2 >
2024-10-10 14:22:20 +02:00
< dl > < dt id = "arg-ds" > ds< a class = "anchor" aria-label = "anchor" href = "#arg-ds" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > main input, either data set or logistic model< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-x" > x< a class = "anchor" aria-label = "anchor" href = "#arg-x" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > text string of main exposure variable< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-y" > y< a class = "anchor" aria-label = "anchor" href = "#arg-y" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > text string of outcome variable< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-vars" > vars< a class = "anchor" aria-label = "anchor" href = "#arg-vars" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > variables for multivariate analysis.< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-dec" > dec< a class = "anchor" aria-label = "anchor" href = "#arg-dec" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > Decimals in labels< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-lbls" > lbls< a class = "anchor" aria-label = "anchor" href = "#arg-lbls" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > Labels for variable names< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-title" > title< a class = "anchor" aria-label = "anchor" href = "#arg-title" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > Plot title. Can be specified later.< / p > < / dd >
2024-10-10 14:22:20 +02:00
< dt id = "arg-method" > method< a class = "anchor" aria-label = "anchor" href = "#arg-method" > < / a > < / dt >
2023-06-30 10:04:32 +02:00
< dd > < p > Character vector. The method for the regression.
Can be c("auto", "model").< / p > < / dd >
< / dl > < / div >
< div class = "section level2" >
< h2 id = "value" > Value< a class = "anchor" aria-label = "anchor" href = "#value" > < / a > < / h2 >
2024-10-10 14:22:20 +02:00
< p > ggplot element< / p >
2023-06-30 10:04:32 +02:00
< / div >
< div class = "section level2" >
< h2 id = "ref-examples" > Examples< a class = "anchor" aria-label = "anchor" href = "#ref-examples" > < / a > < / h2 >
< div class = "sourceCode" > < pre class = "sourceCode r" > < code > < span class = "r-in" > < span > < span class = "co" > # Auto plot< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > < a href = "https://rdrr.io/r/utils/data.html" class = "external-link" > data< / a > < / span > < span class = "op" > (< / span > < span class = "va" > talos< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "va" > talos< / span > < span class = "op" > [< / span > ,< span class = "st" > "mrs_1"< / span > < span class = "op" > ]< / span > < span class = "op" > < -< / span > < span class = "fu" > < a href = "https://rdrr.io/r/base/factor.html" class = "external-link" > factor< / a > < / span > < span class = "op" > (< / span > < span class = "va" > talos< / span > < span class = "op" > [< / span > ,< span class = "st" > "mrs_1"< / span > < span class = "op" > ]< / span > ,ordered< span class = "op" > =< / span > < span class = "cn" > TRUE< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "fu" > ci_plot< / span > < span class = "op" > (< / span > ds < span class = "op" > =< / span > < span class = "va" > talos< / span > , x < span class = "op" > =< / span > < span class = "st" > "rtreat"< / span > , y < span class = "op" > =< / span > < span class = "st" > "mrs_1"< / span > , < / span > < / span >
< span class = "r-in" > < span > vars < span class = "op" > =< / span > < span class = "fu" > < a href = "https://rdrr.io/r/base/c.html" class = "external-link" > c< / a > < / span > < span class = "op" > (< / span > < span class = "st" > "hypertension"< / span > ,< span class = "st" > "diabetes"< / span > < span class = "op" > )< / span > < span class = "op" > )< / span > < / span > < / span >
< span class = "r-msg co" > < span class = "r-pr" > #> < / span > Waiting for profiling to be done...< / span >
< span class = "r-plt img" > < img src = "ci_plot-1.png" alt = "" width = "700" height = "433" > < / span >
< span class = "r-in" > < span > < span class = "co" > ## Model plot< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # iris$ord< -factor(sample(1:3,size=nrow(iris),replace=TRUE),ordered=TRUE)< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # lm < - MASS::polr(ord~., data=iris, Hess=TRUE, method="logistic")< / span > < / span > < / span >
< span class = "r-in" > < span > < span class = "co" > # ci_plot(ds = lm, method="model")< / span > < / span > < / span >
< / code > < / pre > < / div >
< / div >
2024-10-10 14:22:20 +02:00
< / main > < aside class = "col-md-3" > < nav id = "toc" aria-label = "Table of contents" > < h2 > On this page< / h2 >
2023-06-30 10:04:32 +02:00
< / nav > < / aside > < / div >
< footer > < div class = "pkgdown-footer-left" >
2024-10-10 14:22:20 +02:00
< p > Developed by Andreas Gammelgaard Damsbo.< / p >
2023-06-30 10:04:32 +02:00
< / div >
< div class = "pkgdown-footer-right" >
2024-10-10 14:22:20 +02:00
< p > Site built with < a href = "https://pkgdown.r-lib.org/" class = "external-link" > pkgdown< / a > 2.1.1.< / p >
2023-06-30 10:04:32 +02:00
< / div >
< / footer > < / div >
2024-10-10 14:22:20 +02:00
2023-06-30 10:04:32 +02:00
< / body > < / html >
