Deploying to gh-pages from @ agdamsbo/stRoke@81ca1e6817 🚀

This commit is contained in:
agdamsbo 2024-10-25 07:41:37 +00:00
parent 5293cbf17d
commit 820ea16fef
35 changed files with 38 additions and 38 deletions

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@ -65,7 +65,7 @@
<h4 data-toc-skip class="date">2024-10-25</h4>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/vignettes/toolbox.Rmd" class="external-link"><code>vignettes/toolbox.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/vignettes/toolbox.Rmd" class="external-link"><code>vignettes/toolbox.Rmd</code></a></small>
<div class="d-none name"><code>toolbox.Rmd</code></div>
</div>

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@ -45,7 +45,7 @@
<div class="section level2">
<h2 id="citation">Citation</h2>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p>Damsbo A (2024).
<em>stRoke: Clinical Stroke Research</em>.

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
<small>Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
<small>Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
</div>
<div class="section level2">

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@ -3,7 +3,7 @@ pkgdown: 2.1.1
pkgdown_sha: ~
articles:
toolbox: toolbox.html
last_built: 2024-10-25T06:35Z
last_built: 2024-10-25T07:41Z
urls:
reference: https://agdamsbo.github.io/stRoke/reference
article: https://agdamsbo.github.io/stRoke/articles

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Add padding to string</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/add_padding.R" class="external-link"><code>R/add_padding.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/add_padding.R" class="external-link"><code>R/add_padding.R</code></a></small>
<div class="d-none name"><code>add_padding.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Calculate age in years, months, or days</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/age_calc.R" class="external-link"><code>R/age_calc.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/age_calc.R" class="external-link"><code>R/age_calc.R</code></a></small>
<div class="d-none name"><code>age_calc.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Split to chunks of size n</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/chunks_of_n.R" class="external-link"><code>R/chunks_of_n.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/chunks_of_n.R" class="external-link"><code>R/chunks_of_n.R</code></a></small>
<div class="d-none name"><code>chunks_of_n.Rd</code></div>
</div>

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@ -36,7 +36,7 @@ Title and axis labels can be added to the ggplot afterwards.'><meta property="og
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Confidence interval plot with point estimate</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/ci_plot.R" class="external-link"><code>R/ci_plot.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/ci_plot.R" class="external-link"><code>R/ci_plot.R</code></a></small>
<div class="d-none name"><code>ci_plot.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ contrast_text."><meta property="og:image" content="https://agdamsbo.github.io/st
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Plot color examples with contrasting text</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/contrast_text.R" class="external-link"><code>R/contrast_text.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/contrast_text.R" class="external-link"><code>R/contrast_text.R</code></a></small>
<div class="d-none name"><code>color_plot.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ background color."><meta property="og:image" content="https://agdamsbo.github.io
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Contrast Text Color</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/contrast_text.R" class="external-link"><code>R/contrast_text.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/contrast_text.R" class="external-link"><code>R/contrast_text.R</code></a></small>
<div class="d-none name"><code>contrast_text.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>CPR check</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<div class="d-none name"><code>cpr_check.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Extracting date of birth from CPR</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<div class="d-none name"><code>cpr_dob.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Determine female sex from CPR</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/cpr_tools.R" class="external-link"><code>R/cpr_tools.R</code></a></small>
<div class="d-none name"><code>cpr_female.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ for testing purposes."><meta property="og:image" content="https://agdamsbo.githu
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data frame of 200 cpr numbers</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/cprs.R" class="external-link"><code>R/cprs.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/cprs.R" class="external-link"><code>R/cprs.R</code></a></small>
<div class="d-none name"><code>cprs.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1><em>DEPRECATED</em> Moved to REDCapCAST::ds2dd() | Data set to data dictionary function</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
<div class="d-none name"><code>ds2dd.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ provided filter."><meta property="og:image" content="https://agdamsbo.github.io/
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Filter files in a folder</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/files_filter.R" class="external-link"><code>R/files_filter.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/files_filter.R" class="external-link"><code>R/files_filter.R</code></a></small>
<div class="d-none name"><code>files_filter.Rd</code></div>
</div>

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@ -36,7 +36,7 @@ To dos: modify grottaBar and include as own function."><meta property="og:image"
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Generic stroke study outcome</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/generic_stroke.R" class="external-link"><code>R/generic_stroke.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/generic_stroke.R" class="external-link"><code>R/generic_stroke.R</code></a></small>
<div class="d-none name"><code>generic_stroke.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ Includes option to facet."><meta property="og:image" content="https://agdamsbo.g
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Plot multidimensional cognitive test scores</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/index_plot.R" class="external-link"><code>R/index_plot.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/index_plot.R" class="external-link"><code>R/index_plot.R</code></a></small>
<div class="d-none name"><code>index_plot.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ Alternative is to use attributes, eg from library(Hmisc).'><meta property="og:im
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Helper function for labels in gtsummary</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/label_select.R" class="external-link"><code>R/label_select.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/label_select.R" class="external-link"><code>R/label_select.R</code></a></small>
<div class="d-none name"><code>label_select.Rd</code></div>
</div>
@ -78,15 +78,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-in"><span><span class="fu">label_select</span><span class="op">(</span><span class="va">labels_all</span>,<span class="va">vars</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [[1]]</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> hypertension ~ "Known hypertension"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55c19e8adf58&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x562ba5cd5fc0&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [[2]]</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> diabetes ~ "Known diabetes"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55c19e8adf58&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x562ba5cd5fc0&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [[3]]</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mrs_1 ~ "One month mRS"</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55c19e8adf58&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x562ba5cd5fc0&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co">## With gtsummary::tbl_summary()</span></span></span>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Vector of REDCap metadata headers</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/metadata.R" class="external-link"><code>R/metadata.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/metadata.R" class="external-link"><code>R/metadata.R</code></a></small>
<div class="d-none name"><code>metadata_names.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MFI domain score calculator</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/mfi_calc.R" class="external-link"><code>R/mfi_calc.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/mfi_calc.R" class="external-link"><code>R/mfi_calc.R</code></a></small>
<div class="d-none name"><code>mfi_domains.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Reverses relevant MFI subscores</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/mfi_calc.R" class="external-link"><code>R/mfi_calc.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/mfi_calc.R" class="external-link"><code>R/mfi_calc.R</code></a></small>
<div class="d-none name"><code>multi_rev.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Splits in n chunks</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/chunks_of_n.R" class="external-link"><code>R/chunks_of_n.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/chunks_of_n.R" class="external-link"><code>R/chunks_of_n.R</code></a></small>
<div class="d-none name"><code>n_chunks.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ Sample data labels are in Danish."><meta property="og:image" content="https://ag
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data frame with sample data of PASE score questionnaire</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/pase.R" class="external-link"><code>R/pase.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/pase.R" class="external-link"><code>R/pase.R</code></a></small>
<div class="d-none name"><code>pase.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>PASE score calculator</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/pase_calc.R" class="external-link"><code>R/pase_calc.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/pase_calc.R" class="external-link"><code>R/pase_calc.R</code></a></small>
<div class="d-none name"><code>pase_calc.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Prints win_prob results</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/win_prob.R" class="external-link"><code>R/win_prob.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/win_prob.R" class="external-link"><code>R/win_prob.R</code></a></small>
<div class="d-none name"><code>print.win_Prob.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Easy function for splitting numeric variable in quantiles</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/quantile_cut.R" class="external-link"><code>R/quantile_cut.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/quantile_cut.R" class="external-link"><code>R/quantile_cut.R</code></a></small>
<div class="d-none name"><code>quantile_cut.Rd</code></div>
</div>

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@ -34,7 +34,7 @@ five-dimensional cognitive test."><meta property="og:image" content="https://agd
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data frame with sample data of cognitive testing score</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/score.R" class="external-link"><code>R/score.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/score.R" class="external-link"><code>R/score.R</code></a></small>
<div class="d-none name"><code>score.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Source Lines from a File</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/source_lines.R" class="external-link"><code>R/source_lines.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/source_lines.R" class="external-link"><code>R/source_lines.R</code></a></small>
<div class="d-none name"><code>source_lines.Rd</code></div>
</div>

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@ -40,7 +40,7 @@ A collection of tools for clinical trial data management and analysis in researc
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>stRoke: Clinical Stroke Research</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/stRoke-package.R" class="external-link"><code>R/stRoke-package.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/stRoke-package.R" class="external-link"><code>R/stRoke-package.R</code></a></small>
<div class="d-none name"><code>stRoke-package.Rd</code></div>
</div>

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@ -32,7 +32,7 @@
<div class="row">
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<img src="../logo.png" class="logo" alt=""><h1>Extract string based on regex pattern</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/str_extract.R" class="external-link"><code>R/str_extract.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/str_extract.R" class="external-link"><code>R/str_extract.R</code></a></small>
<div class="d-none name"><code>str_extract.Rd</code></div>
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@ -32,7 +32,7 @@
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data frame with sample of TALOS data</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/talos.R" class="external-link"><code>R/talos.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/talos.R" class="external-link"><code>R/talos.R</code></a></small>
<div class="d-none name"><code>talos.Rd</code></div>
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@ -36,7 +36,7 @@ winning with a confidence interval an p-value testing."><meta property="og:image
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Calculates the probability of winning</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/win_prob.R" class="external-link"><code>R/win_prob.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/win_prob.R" class="external-link"><code>R/win_prob.R</code></a></small>
<div class="d-none name"><code>win_prob.Rd</code></div>
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@ -34,7 +34,7 @@ Export as .ics file using calendar::ic_write()."><meta property="og:image" conte
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<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>MOVED Write ical object</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/main/R/write_ical.R" class="external-link"><code>R/write_ical.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/v24.10.1/R/write_ical.R" class="external-link"><code>R/write_ical.R</code></a></small>
<div class="d-none name"><code>write_ical.Rd</code></div>
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