REDCapCAST/reference/create_instrument_meta.html

161 lines
17 KiB
HTML
Raw Blame History

This file contains ambiguous Unicode characters

This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
initial design phase. If you want to later add new instruments, this
function can be used to create (an) instrument(s) to add to a project in
production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
initial design phase. If you want to later add new instruments, this
function can be used to create (an) instrument(s) to add to a project in
production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.11.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div id="navbar" class="collapse navbar-collapse ms-3">
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
<li class="nav-item dropdown">
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
</ul></li>
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
</ul></div>
</div>
</nav><div class="container template-reference-topic">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>DEPRICATED Create zips file with necessary content based on data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Metadata can be added by editing the data dictionary of a project in the
initial design phase. If you want to later add new instruments, this
function can be used to create (an) instrument(s) to add to a project in
production.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">create_instrument_meta</span><span class="op">(</span><span class="va">data</span>, dir <span class="op">=</span> <span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org//reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="st">""</span><span class="op">)</span>, record.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
<dd><p>metadata for the relevant instrument.
Could be from `ds2dd_detailed()`</p></dd>
<dt id="arg-dir">dir<a class="anchor" aria-label="anchor" href="#arg-dir"></a></dt>
<dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd>
<dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
<dd><p>flag to omit the first row of the data dictionary assuming
this is the record_id field which should not be included in the instrument.
Default is TRUE.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span></span></span>
<span class="r-in"><span> add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
<span class="r-in"><span> form.name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> size <span class="op">=</span> <span class="fl">6</span>,</span></span>
<span class="r-in"><span> replace <span class="op">=</span> <span class="cn">TRUE</span>, prob <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>, <span class="fl">2</span><span class="op">)</span></span></span>
<span class="r-in"><span> <span class="op">)</span></span></span>
<span class="r-in"><span> <span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span>
<span class="r-in"><span><span class="co"># data |&gt; create_instrument_meta()</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/stats/setNames.html" class="external-link">setNames</a></span><span class="op">(</span><span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(ncol(iris)),</span></span></span>
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(iris)}"</span><span class="op">)</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>form.sep <span class="op">=</span> <span class="st">"__"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 5</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Sepal.Length Sepal.Width Petal.Length Petal.Width Species</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 5.1 3.5 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 4.9 3 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 4.7 3.2 1.3 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4.6 3.1 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 3.6 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 5.4 3.9 1.7 0.4 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 4.6 3.4 1.4 0.3 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 5 3.4 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 4.4 2.9 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 4.9 3.1 1.5 0.1 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 140 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 5 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> Sepal.Length b <span style="color: #BB0000;">NA</span> text Sepal.Length</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> Sepal.Width b <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> Petal.Length b <span style="color: #BB0000;">NA</span> text Petal.Length</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> Petal.Width b <span style="color: #BB0000;">NA</span> text Petal.Width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> Species b <span style="color: #BB0000;">NA</span> radio Species </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># branching_logic &lt;lgl&gt;, required_field &lt;lgl&gt;, custom_alignment &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># question_number &lt;lgl&gt;, matrix_group_name &lt;lgl&gt;, matrix_ranking &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># field_annotation &lt;lgl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span><span class="co"># data |&gt;</span></span></span>
<span class="r-in"><span><span class="co"># purrr::pluck("meta") |&gt;</span></span></span>
<span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
</nav></aside></div>
<footer><div class="pkgdown-footer-left">
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
</div>
<div class="pkgdown-footer-right">
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
</div>
</footer></div>
</body></html>