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bd29de23c9 | |||
e78e0d3ff9 |
@ -33,11 +33,12 @@ Suggests:
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usethis,
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ggplot2,
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haven,
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here
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here,
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styler
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License: GPL (>= 3)
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Encoding: UTF-8
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LazyData: true
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RoxygenNote: 7.2.3
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RoxygenNote: 7.3.0
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URL: https://github.com/agdamsbo/REDCapCAST, https://agdamsbo.github.io/REDCapCAST/
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BugReports: https://github.com/agdamsbo/REDCapCAST/issues
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Imports:
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@ -56,6 +57,7 @@ Collate:
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'ds2dd.R'
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'ds2dd_detailed.R'
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'easy_redcap.R'
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'read_redcap_instrument.R'
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'read_redcap_tables.R'
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'redcap_wider.R'
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'redcapcast_data.R'
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@ -10,6 +10,7 @@ export(focused_metadata)
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export(get_api_key)
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export(guess_time_only_filter)
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export(match_fields_to_form)
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export(read_redcap_instrument)
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export(read_redcap_tables)
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export(redcap_wider)
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export(sanitize_split)
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9
NEWS.md
9
NEWS.md
@ -6,10 +6,19 @@
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* NEW: `ds2dd_detailed()`: extension of the `ds2dd()`, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the `guess_time_only_filter()`, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.
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* NEW: `read_redcap_instrument()` convenience function to retrieve complete instrument. Goes a little against the focused approach. DETAILED INSTRUCTION IS PENDING.
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### Other
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I believe `renv` has now been added and runs correctly. After clone, do `renv::restore()` to install all necessary package to modify the package.
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### Whishes before CRAN release
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* Vignette for `ds2dd_detailed()`
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* Tests for `ds2dd_detailed()`
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# REDCapCAST 24.1.1
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### Functions
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25
R/read_redcap_instrument.R
Normal file
25
R/read_redcap_instrument.R
Normal file
@ -0,0 +1,25 @@
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#' Convenience function to download complete instrument, using token storage in keyring.
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#'
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#' @param key key name in standard keyring for token retrieval.
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#' @param uri redcap api url
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#' @param instrument instrument name
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#' @param raw_or_label raw or label passed to `REDCapR::redcap_read()`
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#' @param id_name id variable name. Default is "record_id".
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#' @param records specify the records to download. Index numbers. Numeric vector.
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#'
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#' @return data.frame
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#' @export
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read_redcap_instrument <- function(key,
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uri,
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instrument = "rbans",
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raw_or_label = "raw",
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id_name = "record_id",
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records = NULL) {
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REDCapCAST::read_redcap_tables(
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records = records,
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uri = uri, token = keyring::key_get(key),
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fields = id_name,
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forms = instrument,
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raw_or_label = raw_or_label
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)[[{{ instrument }}]]
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}
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@ -3,41 +3,60 @@ CMD
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Codecov
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DOI
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DataDictionary
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Dependens
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GStat
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GithubActions
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JSON
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Lifecycle
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METACRAN
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POSIXct
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Pivotting
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README
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REDCap
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REDCapR
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REDCapRITS
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Whishes
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al
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api
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attr
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da
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dafault
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datetime
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demonstrational
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descirption
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desireable
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dmy
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doi
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dplyr
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ds
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dta
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et
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gues
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hms
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immprovements
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jbi
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keyring
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labelled
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labelling
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mRS
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matadata
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md
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nad
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mdy
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natively
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ncol
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og
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param
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pegeler
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perl
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redcapcast
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pos
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readr
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sel
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stRoke
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stata
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strsplit
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thorugh
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tibble
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tidyverse
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uri
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wil
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ymd
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34
man/read_redcap_instrument.Rd
Normal file
34
man/read_redcap_instrument.Rd
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@ -0,0 +1,34 @@
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% Generated by roxygen2: do not edit by hand
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% Please edit documentation in R/read_redcap_instrument.R
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\name{read_redcap_instrument}
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\alias{read_redcap_instrument}
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\title{Convenience function to download complete instrument, using token storage in keyring.}
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\usage{
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read_redcap_instrument(
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key,
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uri,
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instrument = "rbans",
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raw_or_label = "raw",
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id_name = "record_id",
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records = NULL
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)
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}
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\arguments{
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\item{key}{key name in standard keyring for token retrieval.}
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\item{uri}{redcap api url}
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\item{instrument}{instrument name}
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\item{raw_or_label}{raw or label passed to `REDCapR::redcap_read()`}
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\item{id_name}{id variable name. Default is "record_id".}
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\item{records}{specify the records to download. Index numbers. Numeric vector.}
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}
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\value{
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data.frame
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}
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\description{
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Convenience function to download complete instrument, using token storage in keyring.
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}
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