new read_redcap_instrument in development

This commit is contained in:
Andreas Gammelgaard Damsbo 2024-01-29 12:43:37 +01:00
parent 4c5d58bf82
commit e78e0d3ff9
3 changed files with 68 additions and 0 deletions

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* NEW: `ds2dd_detailed()`: extension of the `ds2dd()`, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the `guess_time_only_filter()`, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.
* NEW: `read_redcap_instrument()` convenience function to retrieve complete instrument. Goes a little against the focused approach. DETAILED INSTRUCTION IS PENDING.
### Other
I believe `renv` has now been added and runs correctly. After clone, do `renv::restore()` to install all necessary package to modify the package.
### Whishes before CRAN release
* Vignette for `ds2dd_detailed()`
* Tests for `ds2dd_detailed()`
# REDCapCAST 24.1.1
### Functions

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#' Convenience function to download complete instrument, using token storage in keyring.
#'
#' @param key key name in standard keyring for token retrieval.
#' @param uri redcap api url
#' @param instrument instrument name
#' @param raw_or_label raw or label passed to `REDCapR::redcap_read()`
#' @param id_name id variable name. Default is "record_id".
#' @param records specify the records to download. Index numbers. Numeric vector.
#'
#' @return data.frame
#' @export
read_redcap_instrument <- function(key,
uri,
instrument = "rbans",
raw_or_label = "raw",
id_name = "record_id",
records = NULL) {
REDCapCAST::read_redcap_tables(
records = records,
uri = uri, token = keyring::key_get(key),
fields = id_name,
forms = instrument,
raw_or_label = raw_or_label
)[[{{ instrument }}]]
}

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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/read_redcap_instrument.R
\name{read_redcap_instrument}
\alias{read_redcap_instrument}
\title{Convenience function to download complete instrument, using token storage in keyring.}
\usage{
read_redcap_instrument(
key,
uri,
instrument = "rbans",
raw_or_label = "raw",
id_name = "record_id",
records = NULL
)
}
\arguments{
\item{key}{key name in standard keyring for token retrieval.}
\item{uri}{redcap api url}
\item{instrument}{instrument name}
\item{raw_or_label}{raw or label passed to `REDCapR::redcap_read()`}
\item{id_name}{id variable name. Default is "record_id".}
\item{records}{specify the records to download. Index numbers. Numeric vector.}
}
\value{
data.frame
}
\description{
Convenience function to download complete instrument, using token storage in keyring.
}