mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-22 13:30:23 +01:00
Compare commits
2 Commits
4c5d58bf82
...
bd29de23c9
Author | SHA1 | Date | |
---|---|---|---|
bd29de23c9 | |||
e78e0d3ff9 |
@ -33,11 +33,12 @@ Suggests:
|
|||||||
usethis,
|
usethis,
|
||||||
ggplot2,
|
ggplot2,
|
||||||
haven,
|
haven,
|
||||||
here
|
here,
|
||||||
|
styler
|
||||||
License: GPL (>= 3)
|
License: GPL (>= 3)
|
||||||
Encoding: UTF-8
|
Encoding: UTF-8
|
||||||
LazyData: true
|
LazyData: true
|
||||||
RoxygenNote: 7.2.3
|
RoxygenNote: 7.3.0
|
||||||
URL: https://github.com/agdamsbo/REDCapCAST, https://agdamsbo.github.io/REDCapCAST/
|
URL: https://github.com/agdamsbo/REDCapCAST, https://agdamsbo.github.io/REDCapCAST/
|
||||||
BugReports: https://github.com/agdamsbo/REDCapCAST/issues
|
BugReports: https://github.com/agdamsbo/REDCapCAST/issues
|
||||||
Imports:
|
Imports:
|
||||||
@ -56,6 +57,7 @@ Collate:
|
|||||||
'ds2dd.R'
|
'ds2dd.R'
|
||||||
'ds2dd_detailed.R'
|
'ds2dd_detailed.R'
|
||||||
'easy_redcap.R'
|
'easy_redcap.R'
|
||||||
|
'read_redcap_instrument.R'
|
||||||
'read_redcap_tables.R'
|
'read_redcap_tables.R'
|
||||||
'redcap_wider.R'
|
'redcap_wider.R'
|
||||||
'redcapcast_data.R'
|
'redcapcast_data.R'
|
||||||
|
@ -10,6 +10,7 @@ export(focused_metadata)
|
|||||||
export(get_api_key)
|
export(get_api_key)
|
||||||
export(guess_time_only_filter)
|
export(guess_time_only_filter)
|
||||||
export(match_fields_to_form)
|
export(match_fields_to_form)
|
||||||
|
export(read_redcap_instrument)
|
||||||
export(read_redcap_tables)
|
export(read_redcap_tables)
|
||||||
export(redcap_wider)
|
export(redcap_wider)
|
||||||
export(sanitize_split)
|
export(sanitize_split)
|
||||||
|
9
NEWS.md
9
NEWS.md
@ -6,10 +6,19 @@
|
|||||||
|
|
||||||
* NEW: `ds2dd_detailed()`: extension of the `ds2dd()`, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the `guess_time_only_filter()`, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.
|
* NEW: `ds2dd_detailed()`: extension of the `ds2dd()`, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the `guess_time_only_filter()`, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.
|
||||||
|
|
||||||
|
* NEW: `read_redcap_instrument()` convenience function to retrieve complete instrument. Goes a little against the focused approach. DETAILED INSTRUCTION IS PENDING.
|
||||||
|
|
||||||
### Other
|
### Other
|
||||||
|
|
||||||
I believe `renv` has now been added and runs correctly. After clone, do `renv::restore()` to install all necessary package to modify the package.
|
I believe `renv` has now been added and runs correctly. After clone, do `renv::restore()` to install all necessary package to modify the package.
|
||||||
|
|
||||||
|
### Whishes before CRAN release
|
||||||
|
|
||||||
|
* Vignette for `ds2dd_detailed()`
|
||||||
|
|
||||||
|
* Tests for `ds2dd_detailed()`
|
||||||
|
|
||||||
|
|
||||||
# REDCapCAST 24.1.1
|
# REDCapCAST 24.1.1
|
||||||
|
|
||||||
### Functions
|
### Functions
|
||||||
|
25
R/read_redcap_instrument.R
Normal file
25
R/read_redcap_instrument.R
Normal file
@ -0,0 +1,25 @@
|
|||||||
|
#' Convenience function to download complete instrument, using token storage in keyring.
|
||||||
|
#'
|
||||||
|
#' @param key key name in standard keyring for token retrieval.
|
||||||
|
#' @param uri redcap api url
|
||||||
|
#' @param instrument instrument name
|
||||||
|
#' @param raw_or_label raw or label passed to `REDCapR::redcap_read()`
|
||||||
|
#' @param id_name id variable name. Default is "record_id".
|
||||||
|
#' @param records specify the records to download. Index numbers. Numeric vector.
|
||||||
|
#'
|
||||||
|
#' @return data.frame
|
||||||
|
#' @export
|
||||||
|
read_redcap_instrument <- function(key,
|
||||||
|
uri,
|
||||||
|
instrument = "rbans",
|
||||||
|
raw_or_label = "raw",
|
||||||
|
id_name = "record_id",
|
||||||
|
records = NULL) {
|
||||||
|
REDCapCAST::read_redcap_tables(
|
||||||
|
records = records,
|
||||||
|
uri = uri, token = keyring::key_get(key),
|
||||||
|
fields = id_name,
|
||||||
|
forms = instrument,
|
||||||
|
raw_or_label = raw_or_label
|
||||||
|
)[[{{ instrument }}]]
|
||||||
|
}
|
@ -3,41 +3,60 @@ CMD
|
|||||||
Codecov
|
Codecov
|
||||||
DOI
|
DOI
|
||||||
DataDictionary
|
DataDictionary
|
||||||
|
Dependens
|
||||||
GStat
|
GStat
|
||||||
GithubActions
|
GithubActions
|
||||||
JSON
|
JSON
|
||||||
Lifecycle
|
Lifecycle
|
||||||
METACRAN
|
METACRAN
|
||||||
|
POSIXct
|
||||||
Pivotting
|
Pivotting
|
||||||
README
|
README
|
||||||
REDCap
|
REDCap
|
||||||
REDCapR
|
REDCapR
|
||||||
REDCapRITS
|
REDCapRITS
|
||||||
|
Whishes
|
||||||
al
|
al
|
||||||
api
|
api
|
||||||
|
attr
|
||||||
da
|
da
|
||||||
|
dafault
|
||||||
|
datetime
|
||||||
demonstrational
|
demonstrational
|
||||||
descirption
|
descirption
|
||||||
desireable
|
desireable
|
||||||
|
dmy
|
||||||
doi
|
doi
|
||||||
dplyr
|
dplyr
|
||||||
ds
|
ds
|
||||||
|
dta
|
||||||
et
|
et
|
||||||
|
gues
|
||||||
|
hms
|
||||||
immprovements
|
immprovements
|
||||||
jbi
|
jbi
|
||||||
keyring
|
keyring
|
||||||
|
labelled
|
||||||
|
labelling
|
||||||
mRS
|
mRS
|
||||||
matadata
|
matadata
|
||||||
md
|
md
|
||||||
nad
|
mdy
|
||||||
|
natively
|
||||||
|
ncol
|
||||||
og
|
og
|
||||||
param
|
param
|
||||||
pegeler
|
pegeler
|
||||||
perl
|
perl
|
||||||
redcapcast
|
pos
|
||||||
|
readr
|
||||||
|
sel
|
||||||
stRoke
|
stRoke
|
||||||
|
stata
|
||||||
strsplit
|
strsplit
|
||||||
thorugh
|
thorugh
|
||||||
tibble
|
tibble
|
||||||
tidyverse
|
tidyverse
|
||||||
uri
|
uri
|
||||||
|
wil
|
||||||
|
ymd
|
||||||
|
34
man/read_redcap_instrument.Rd
Normal file
34
man/read_redcap_instrument.Rd
Normal file
@ -0,0 +1,34 @@
|
|||||||
|
% Generated by roxygen2: do not edit by hand
|
||||||
|
% Please edit documentation in R/read_redcap_instrument.R
|
||||||
|
\name{read_redcap_instrument}
|
||||||
|
\alias{read_redcap_instrument}
|
||||||
|
\title{Convenience function to download complete instrument, using token storage in keyring.}
|
||||||
|
\usage{
|
||||||
|
read_redcap_instrument(
|
||||||
|
key,
|
||||||
|
uri,
|
||||||
|
instrument = "rbans",
|
||||||
|
raw_or_label = "raw",
|
||||||
|
id_name = "record_id",
|
||||||
|
records = NULL
|
||||||
|
)
|
||||||
|
}
|
||||||
|
\arguments{
|
||||||
|
\item{key}{key name in standard keyring for token retrieval.}
|
||||||
|
|
||||||
|
\item{uri}{redcap api url}
|
||||||
|
|
||||||
|
\item{instrument}{instrument name}
|
||||||
|
|
||||||
|
\item{raw_or_label}{raw or label passed to `REDCapR::redcap_read()`}
|
||||||
|
|
||||||
|
\item{id_name}{id variable name. Default is "record_id".}
|
||||||
|
|
||||||
|
\item{records}{specify the records to download. Index numbers. Numeric vector.}
|
||||||
|
}
|
||||||
|
\value{
|
||||||
|
data.frame
|
||||||
|
}
|
||||||
|
\description{
|
||||||
|
Convenience function to download complete instrument, using token storage in keyring.
|
||||||
|
}
|
Loading…
Reference in New Issue
Block a user