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This commit is contained in:
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8ca611338b
@ -34,7 +34,7 @@
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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||||
<img src="logo.png" class="logo" alt=""><h1>Contributor Covenant Code of Conduct</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
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</div>
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<div id="contributor-covenant-code-of-conduct" class="section level1">
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@ -34,7 +34,7 @@
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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||||
<img src="logo.png" class="logo" alt=""><h1>GNU General Public License</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
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</div>
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<div id="gnu-general-public-license" class="section level1">
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@ -66,7 +66,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
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<div class="d-none name"><code>Database-creation.Rmd</code></div>
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</div>
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@ -1290,7 +1290,7 @@ preserve as much information as possible.</p>
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<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
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<thead><tr class="gt_col_headings">
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="field_name">field_name</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="form_name">form_name</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="form_name">form_name</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="section_header">section_header</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="field_type">field_type</th>
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<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="field_label">field_label</th>
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<tbody class="gt_table_body">
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<tr>
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<td headers="field_name" class="gt_row gt_left">record_id</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">record_id</td>
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@ -1331,7 +1331,7 @@ preserve as much information as possible.</p>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">cpr</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">cpr</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">inclusion</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">inclusion</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">inclusion_time</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">inclusion_time</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">dob</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">dob</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">age</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">age</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">age_integer</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">age_integer</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">sex</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">sex</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">cohabitation</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">cohabitation</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">hypertension</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">hypertension</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">diabetes</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">diabetes</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">region</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">radio</td>
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<td headers="field_label" class="gt_row gt_left">region</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">mrs_assessed</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">mrs_assessed</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">mrs_date</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">mrs_date</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">mrs_score</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">mrs_score</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">event_datetime</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">event_datetime</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">event_age</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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<td headers="form_name" class="gt_row gt_left">data</td>
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<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">event_age</td>
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</tr>
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<tr>
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<td headers="field_name" class="gt_row gt_left">event_type</td>
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<td headers="form_name" class="gt_row gt_center">NA</td>
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||||
<td headers="form_name" class="gt_row gt_left">data</td>
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||||
<td headers="section_header" class="gt_row gt_center">NA</td>
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<td headers="field_type" class="gt_row gt_left">text</td>
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<td headers="field_label" class="gt_row gt_left">event_type</td>
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<img src="../logo.png" class="logo" alt=""><h1>Introduction</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<div class="d-none name"><code>Introduction.Rmd</code></div>
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</div>
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<img src="../logo.png" class="logo" alt=""><h1>Shiny-app</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
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<div class="d-none name"><code>Shiny-app.Rmd</code></div>
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</div>
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<div class="section level2">
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<h2 id="citation">Citation</h2>
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<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
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<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
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<p>Damsbo A, Egeler P (2024).
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<em>REDCapCAST: REDCap Castellated Data Handling</em>.
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
|
||||
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
</div>
|
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<div class="section level2">
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||||
<h2 class="pkg-version" data-toc-text="24.10.4" id="redcapcast-24104">REDCapCAST 24.10.4<a class="anchor" aria-label="anchor" href="#redcapcast-24104"></a></h2>
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<p>Revised tests.</p>
|
||||
<div class="section level4">
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<h4 id="functions-24-10-4">Functions:<a class="anchor" aria-label="anchor" href="#functions-24-10-4"></a></h4>
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<ul><li><p>Bug: ‘form.name’ specified to ‘ds2dd_detailed()’ was ignored. Corrected to only be ignored if ‘form.sep’ is specified. Added handling of re-occurring <code>form.sep</code> pattern.</p></li>
|
||||
<li><p>New: <code><a href="../reference/export_redcap_instrument.html">export_redcap_instrument()</a></code> is a new version of <code><a href="../reference/create_instrument_meta.html">create_instrument_meta()</a></code>, that will only export a single instrument. Multiple instrument export can be done with <code><a href="https://rdrr.io/r/base/lapply.html" class="external-link">lapply()</a></code> or <code><a href="https://purrr.tidyverse.org/reference/map.html" class="external-link">purrr::map()</a></code>. This allows for inclusion of this functionality in the Shiny implementation and is easier to handle. <code><a href="../reference/create_instrument_meta.html">create_instrument_meta()</a></code> is deprecated.</p></li>
|
||||
</ul></div>
|
||||
<div class="section level4">
|
||||
<h4 id="shiny-24-10-4">Shiny:<a class="anchor" aria-label="anchor" href="#shiny-24-10-4"></a></h4>
|
||||
<ul><li>New: Export a REDCap instrument ready to add to your database based on an uploaded spreadsheet. This is thanks to the <code><a href="../reference/export_redcap_instrument.html">export_redcap_instrument()</a></code> function. THis functionality is intended for projects in production and adding instruments should be handled manually and not by API upload.</li>
|
||||
</ul><p>The shiny implementation is included with this package. Implementing in shinylive may be looked into again later.</p>
|
||||
</div>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 class="pkg-version" data-toc-text="24.10.3" id="redcapcast-24103">REDCapCAST 24.10.3<a class="anchor" aria-label="anchor" href="#redcapcast-24103"></a></h2><p class="text-muted">CRAN release: 2024-10-03</p>
|
||||
<p>Updated links and spelling.</p>
|
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@ -5,7 +5,7 @@ articles:
|
||||
Database-creation: Database-creation.html
|
||||
Introduction: Introduction.html
|
||||
Shiny-app: Shiny-app.html
|
||||
last_built: 2024-10-03T08:56Z
|
||||
last_built: 2024-10-24T09:59Z
|
||||
urls:
|
||||
reference: https://agdamsbo.github.io/REDCapCAST/reference
|
||||
article: https://agdamsbo.github.io/REDCapCAST/articles
|
||||
|
||||
@ -40,7 +40,7 @@ Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://gi
|
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<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>REDCapCAST: REDCap Castellated Data Handling</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
|
||||
<div class="d-none name"><code>REDCapCAST-package.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -38,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
||||
<div class="d-none name"><code>REDCap_split.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -42,7 +42,7 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>case_match_regex_list.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>char2choice.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>char2cond.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -38,7 +38,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>clean_redcap_name.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>create_html_table.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -1,9 +1,11 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create zips file with necessary content based on data set — create_instrument_meta"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this can be
|
||||
used to add instrument(s) to a project in production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this can be
|
||||
used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
@ -37,15 +39,16 @@ used to add instrument(s) to a project in production."><meta property="og:image"
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Create zips file with necessary content based on data set</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small>
|
||||
<img src="../logo.png" class="logo" alt=""><h1>DEPRICATED Create zips file with necessary content based on data set</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
|
||||
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this can be
|
||||
used to add instrument(s) to a project in production.</p>
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -80,8 +83,13 @@ Default is TRUE.</p></dd>
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
|
||||
<span class="r-in"><span> form.name<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>,<span class="st">"c"</span><span class="op">)</span>,size <span class="op">=</span> <span class="fl">6</span>,replace <span class="op">=</span> <span class="cn">TRUE</span>,prob<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>,<span class="fl">2</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
|
||||
<span class="r-in"><span> form.name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>,</span></span>
|
||||
<span class="r-in"><span> size <span class="op">=</span> <span class="fl">6</span>,</span></span>
|
||||
<span class="r-in"><span> replace <span class="op">=</span> <span class="cn">TRUE</span>, prob <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>, <span class="fl">2</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-in"><span><span class="co"># data |> create_instrument_meta()</span></span></span>
|
||||
@ -89,9 +97,42 @@ Default is TRUE.</p></dd>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">data</span><span class="op">)</span> <span class="op"><-</span> <span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(names(data)),</span></span></span>
|
||||
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(data)}"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op"><-</span> <span class="va">data</span> <span class="op">|></span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>form.sep<span class="op">=</span><span class="st">"__"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/stats/setNames.html" class="external-link">setNames</a></span><span class="op">(</span><span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(ncol(iris)),</span></span></span>
|
||||
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(iris)}"</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>form.sep <span class="op">=</span> <span class="st">"__"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 150 × 5</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Sepal.Length Sepal.Width Petal.Length Petal.Width Species</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><fct></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 5.1 3.5 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 4.9 3 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 4.7 3.2 1.3 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 4.6 3.1 1.5 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 5 3.6 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 5.4 3.9 1.7 0.4 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 4.6 3.4 1.4 0.3 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 5 3.4 1.5 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 4.4 2.9 1.4 0.2 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 4.9 3.1 1.5 0.1 setosa </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 140 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 5 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> Sepal.Length b <span style="color: #BB0000;">NA</span> text Sepal.Length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> Sepal.Width b <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> Petal.Length b <span style="color: #BB0000;">NA</span> text Petal.Length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> Petal.Width b <span style="color: #BB0000;">NA</span> text Petal.Width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> Species b <span style="color: #BB0000;">NA</span> radio Species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="co"># data |></span></span></span>
|
||||
<span class="r-in"><span><span class="co"># purrr::pluck("meta") |></span></span></span>
|
||||
<span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>d2w.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -44,7 +44,7 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>doc2dd.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ for a more advanced function."><meta property="og:image" content="https://agdams
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>ds2dd.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -87,7 +87,7 @@ ncol(data). Default is NULL and "data" is used.</p></dd>
|
||||
<dt id="arg-form-sep">form.sep<a class="anchor" aria-label="anchor" href="#arg-form-sep"></a></dt>
|
||||
<dd><p>If supplied dataset has form names as suffix or prefix to the
|
||||
column/variable names, the seperator can be specified. If supplied, the
|
||||
form.sep is ignored. Default is NULL.</p></dd>
|
||||
form.name is ignored. Default is NULL.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-form-prefix">form.prefix<a class="anchor" aria-label="anchor" href="#arg-form-prefix"></a></dt>
|
||||
@ -262,17 +262,17 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 24 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> redcap_event_name <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_event_na…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> redcap_repeat_instrument <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> redcap_repeat_instance <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> cpr <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text cpr </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text inclusion </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> inclusion_time <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text inclusion_time </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> dob <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text dob </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> age <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text age </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> age_integer <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text age_integer </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> redcap_event_name data <span style="color: #BB0000;">NA</span> text redcap_event_na…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> redcap_repeat_instrument data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> redcap_repeat_instance data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> cpr data <span style="color: #BB0000;">NA</span> text cpr </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> inclusion data <span style="color: #BB0000;">NA</span> text inclusion </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> inclusion_time data <span style="color: #BB0000;">NA</span> text inclusion_time </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> dob data <span style="color: #BB0000;">NA</span> text dob </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> age data <span style="color: #BB0000;">NA</span> text age </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> age_integer data <span style="color: #BB0000;">NA</span> text age_integer </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 14 more rows</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
@ -302,13 +302,13 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text sepal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text sepal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text petal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text petal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> radio species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length data <span style="color: #BB0000;">NA</span> text sepal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width data <span style="color: #BB0000;">NA</span> text sepal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length data <span style="color: #BB0000;">NA</span> text petal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width data <span style="color: #BB0000;">NA</span> text petal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species data <span style="color: #BB0000;">NA</span> radio species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
@ -316,6 +316,28 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
<span class="r-in"><span><span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">ds2dd_detailed</span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
|
||||
<span class="r-in"><span> form.name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>, size <span class="op">=</span> <span class="fl">6</span>, replace <span class="op">=</span> <span class="cn">TRUE</span>, prob <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>, <span class="fl">2</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id c <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length b <span style="color: #BB0000;">NA</span> text sepal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width b <span style="color: #BB0000;">NA</span> text sepal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length b <span style="color: #BB0000;">NA</span> text petal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width c <span style="color: #BB0000;">NA</span> text petal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species c <span style="color: #BB0000;">NA</span> radio species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># field_annotation <lgl></span></span>
|
||||
<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
@ -337,19 +359,19 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $meta</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 12 × 18</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> field_name form_name section_header field_type field_label</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> mpg <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text mpg </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> cyl <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text cyl </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> disp <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text disp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> hp <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text hp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> drat <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text drat </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> wt <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text wt </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> qsec <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text qsec </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> vs <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text vs </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> am <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text am </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> gear <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text gear </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> carb <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text carb </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><lgl></span> <span style="color: #949494; font-style: italic;"><chr></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> mpg data <span style="color: #BB0000;">NA</span> text mpg </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> cyl data <span style="color: #BB0000;">NA</span> text cyl </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> disp data <span style="color: #BB0000;">NA</span> text disp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> hp data <span style="color: #BB0000;">NA</span> text hp </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> drat data <span style="color: #BB0000;">NA</span> text drat </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> wt data <span style="color: #BB0000;">NA</span> text wt </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> qsec data <span style="color: #BB0000;">NA</span> text qsec </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> vs data <span style="color: #BB0000;">NA</span> text vs </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> am data <span style="color: #BB0000;">NA</span> text am </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">11</span> gear data <span style="color: #BB0000;">NA</span> text gear </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">12</span> carb data <span style="color: #BB0000;">NA</span> text carb </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
@ -363,7 +385,7 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">data</span><span class="op">)</span> <span class="op"><-</span> <span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(names(data)),</span></span></span>
|
||||
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(data)}"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>form.sep<span class="op">=</span><span class="st">"__"</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">data</span> <span class="op">|></span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>form.sep <span class="op">=</span> <span class="st">"__"</span><span class="op">)</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> $data</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> record_id sepal.length sepal.width petal.length petal.width species</span>
|
||||
@ -387,9 +409,9 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> record_id b <span style="color: #BB0000;">NA</span> text record_id </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> sepal.length b <span style="color: #BB0000;">NA</span> text sepal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> sepal.width b <span style="color: #BB0000;">NA</span> text sepal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length a <span style="color: #BB0000;">NA</span> text petal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width a <span style="color: #BB0000;">NA</span> text petal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species a <span style="color: #BB0000;">NA</span> radio species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">4</span> petal.length b <span style="color: #BB0000;">NA</span> text petal.length</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">5</span> petal.width b <span style="color: #BB0000;">NA</span> text petal.width </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">6</span> species b <span style="color: #BB0000;">NA</span> radio species </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_type_or_show_slider_number <chr>,</span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>,</span></span>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<div class="d-none name"><code>easy_redcap.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
129
reference/export_redcap_instrument.html
Normal file
129
reference/export_redcap_instrument.html
Normal file
@ -0,0 +1,129 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.10.3</small>
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item dropdown">
|
||||
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
|
||||
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
|
||||
</ul></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Creates zip-file with necessary content to manually add instrument to database</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
|
||||
<div class="d-none name"><code>export_redcap_instrument.Rd</code></div>
|
||||
</div>
|
||||
|
||||
<div class="ref-description section level2">
|
||||
<p>Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this
|
||||
function can be used to create (an) instrument(s) to add to a project in
|
||||
production.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">export_redcap_instrument</span><span class="op">(</span><span class="va">data</span>, <span class="va">file</span>, force <span class="op">=</span> <span class="cn">FALSE</span>, record.id <span class="op">=</span> <span class="st">"record_id"</span><span class="op">)</span></span></code></pre></div>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>metadata for the relevant instrument.
|
||||
Could be from `ds2dd_detailed()`</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
|
||||
<dd><p>record id variable name. Default is 'record_id'.</p></dd>
|
||||
|
||||
|
||||
<dt id="arg-dir">dir<a class="anchor" aria-label="anchor" href="#arg-dir"></a></dt>
|
||||
<dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
<p>exports zip-file</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
|
||||
<span class="r-in"><span> form.name <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>, <span class="st">"c"</span><span class="op">)</span>, size <span class="op">=</span> <span class="fl">6</span>, replace <span class="op">=</span> <span class="cn">TRUE</span>, prob <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>, <span class="fl">2</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="op">(</span>\<span class="op">(</span><span class="va">.x</span><span class="op">)</span><span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/split.html" class="external-link">split</a></span><span class="op">(</span><span class="va">.x</span>, <span class="va">.x</span><span class="op">$</span><span class="va">form_name</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span><span class="op">)</span><span class="op">(</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/imap.html" class="external-link">imap</a></span><span class="op">(</span><span class="kw">function</span><span class="op">(</span><span class="va">.x</span>, <span class="va">.i</span><span class="op">)</span><span class="op">{</span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">export_redcap_instrument</span><span class="op">(</span><span class="va">.x</span>,file<span class="op">=</span><span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org//reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="va">.i</span>,<span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>,<span class="st">".zip"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">}</span><span class="op">)</span></span></span>
|
||||
<span class="r-msg co"><span class="r-pr">#></span> A default id column has been added</span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in map2(.x, vec_index(.x), .f, ...):</span> <span style="color: #00BBBB;">ℹ</span> In index: 1.</span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span style="color: #00BBBB;">ℹ</span> With name: b.</span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span style="font-weight: bold;">Caused by error in `export_redcap_instrument()`:</span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span style="color: #BBBB00;">!</span> could not find function "export_redcap_instrument"</span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="va">iris</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span></span></span>
|
||||
<span class="r-in"><span> add.auto.id <span class="op">=</span> <span class="cn">TRUE</span></span></span>
|
||||
<span class="r-in"><span> <span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span> <span class="op">|></span></span></span>
|
||||
<span class="r-in"><span> <span class="fu">export_redcap_instrument</span><span class="op">(</span>file<span class="op">=</span><span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org//reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">"instrument"</span>,<span class="fu"><a href="https://rdrr.io/r/base/Sys.time.html" class="external-link">Sys.Date</a></span><span class="op">(</span><span class="op">)</span>,<span class="st">".zip"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in export_redcap_instrument(purrr::pluck(ds2dd_detailed(iris, add.auto.id = TRUE), "meta"), file = here::here(paste0("instrument", Sys.Date(), ".zip"))):</span> could not find function "export_redcap_instrument"</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>file_extension.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>focused_metadata</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>focused_metadata.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>format_subheader.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<div class="d-none name"><code>get_api_key.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>get_id_name.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@ has to be converted to character class before REDCap upload.'><meta property="og
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>hms2character.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>html_tag_wrap.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -88,7 +88,7 @@
|
||||
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create zips file with necessary content based on data set</dd>
|
||||
<dd>DEPRICATED Create zips file with necessary content based on data set</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="d2w.html">d2w()</a></code>
|
||||
@ -121,6 +121,12 @@
|
||||
<dd>Secure API key storage and data acquisition in one</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="export_redcap_instrument.html">export_redcap_instrument()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Creates zip-file with necessary content to manually add instrument to database</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="file_extension.html">file_extension()</a></code>
|
||||
|
||||
</dt>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>is_missing.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>mark_complete.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Match fields to forms</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>match_fields_to_form.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
|
||||
<div class="d-none name"><code>mtcars_redcap.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<div class="d-none name"><code>process_user_input.character.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<div class="d-none name"><code>process_user_input.default.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<div class="d-none name"><code>process_user_input.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
||||
<div class="d-none name"><code>process_user_input.response.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>read_input.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
|
||||
<div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -42,7 +42,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<div class="d-none name"><code>read_redcap_tables.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<div class="d-none name"><code>redcap_wider.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
||||
<div class="d-none name"><code>redcapcast_data.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>REDCap metadata from data base</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
|
||||
<div class="d-none name"><code>redcapcast_meta.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:image"
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>replace_curly_quote.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>sanitize_split.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Shiny server factory</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>server_factory.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Launch the included Shiny-app for database casting and upload</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>shiny_cast.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ easing the split around the defined delimiter, see example."><meta property="og:
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Extended string splitting</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>strsplitx.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>time_only_correction.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>UI factory for shiny app</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.10.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>ui_factory.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
File diff suppressed because one or more lines are too long
@ -22,6 +22,7 @@
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html</loc></url>
|
||||
|
||||
Loading…
Reference in New Issue
Block a user