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69 changed files with 69 additions and 69 deletions
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CODE_OF_CONDUCT.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="logo.png" class="logo" alt=""><h1>Contributor Covenant Code of Conduct</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
</div>
<div id="contributor-covenant-code-of-conduct" class="section level1">

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LICENSE.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="logo.png" class="logo" alt=""><h1>GNU General Public License</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
</div>
<div id="gnu-general-public-license" class="section level1">

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articles/Database-creation.html
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<img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
<div class="d-none name"><code>Database-creation.Rmd</code></div>
</div>

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articles/REDCapCAST.html
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<img src="../logo.png" class="logo" alt=""><h1>REDCapCAST</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/REDCapCAST.Rmd" class="external-link"><code>vignettes/REDCapCAST.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/vignettes/REDCapCAST.Rmd" class="external-link"><code>vignettes/REDCapCAST.Rmd</code></a></small>
<div class="d-none name"><code>REDCapCAST.Rmd</code></div>
</div>

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articles/Shiny-app.html
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<img src="../logo.png" class="logo" alt=""><h1>Shiny-app</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
<div class="d-none name"><code>Shiny-app.Rmd</code></div>
</div>

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authors.html
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<div class="section level2">
<h2 id="citation">Citation</h2>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p>Damsbo A, Egeler P (2024).
<em>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling</em>.

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news/index.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
</div>
<div class="section level2">

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pkgdown.yml
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@ -5,7 +5,7 @@ articles:
Database-creation: Database-creation.html
REDCapCAST: REDCapCAST.html
Shiny-app: Shiny-app.html
last_built: 2024-11-25T09:26Z
last_built: 2024-11-25T12:39Z
urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles

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reference/REDCapCAST-package.html
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@ -40,7 +40,7 @@ Casting metadata for REDCap database creation and handling of castellated data u
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>REDCapCAST: REDCap Castellated Data Handling and Metadata Casting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
<div class="d-none name"><code>REDCapCAST-package.Rd</code></div>
</div>

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reference/REDCap_split.html
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@ -38,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
<div class="d-none name"><code>REDCap_split.Rd</code></div>
</div>

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reference/all_na.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Check if vector is all NA</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>all_na.Rd</code></div>
</div>

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reference/as_factor.html
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@ -38,7 +38,7 @@ ta loss in case of rich formatted and labelled data.'><meta property="og:image"
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Convert labelled vectors to factors while preserving attributes</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>as_factor.Rd</code></div>
</div>

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reference/case_match_regex_list.html
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@ -42,7 +42,7 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>case_match_regex_list.Rd</code></div>
</div>

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reference/cast_data_overview.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Overview of REDCapCAST data for shiny</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>cast_data_overview.Rd</code></div>
</div>

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reference/cast_meta_overview.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Overview of REDCapCAST meta data for shiny</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>cast_meta_overview.Rd</code></div>
</div>

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reference/char2choice.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2choice.Rd</code></div>
</div>

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reference/char2cond.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>char2cond.Rd</code></div>
</div>

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reference/clean_redcap_name.html
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@ -38,7 +38,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>clean_redcap_name.Rd</code></div>
</div>

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reference/compact_vec.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Compacting a vector of any length with or without names</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>compact_vec.Rd</code></div>
</div>

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reference/create_html_table.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>create_html_table.Rd</code></div>
</div>

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reference/create_instrument_meta.html
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@ -40,7 +40,7 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>DEPRICATED Create zips file with necessary content based on data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
</div>

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reference/d2w.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>d2w.Rd</code></div>
</div>

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reference/doc2dd.html
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@ -44,7 +44,7 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>doc2dd.Rd</code></div>
</div>

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reference/ds2dd.html
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@ -36,7 +36,7 @@ for a more advanced function."><meta property="og:image" content="https://agdams
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
<div class="d-none name"><code>ds2dd.Rd</code></div>
</div>

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reference/ds2dd_detailed.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
</div>

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reference/easy_redcap.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<div class="d-none name"><code>easy_redcap.Rd</code></div>
</div>

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reference/export_redcap_instrument.html
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@ -40,7 +40,7 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Creates zip-file with necessary content to manually add instrument to database</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>export_redcap_instrument.Rd</code></div>
</div>

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reference/fct2num.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Allows conversion of factor to numeric values preserving original levels</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>fct2num.Rd</code></div>
</div>

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reference/file_extension.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>DEPRECATED Helper to import files correctly</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>file_extension.Rd</code></div>
</div>

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reference/focused_metadata.html
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<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>focused_metadata</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>focused_metadata.Rd</code></div>
</div>

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reference/format_subheader.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>format_subheader.Rd</code></div>
</div>

2
reference/get_api_key.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
<div class="d-none name"><code>get_api_key.Rd</code></div>
</div>

2
reference/get_attr.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Extract attribute. Returns NA if none</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>get_attr.Rd</code></div>
</div>

2
reference/get_id_name.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>get_id_name.Rd</code></div>
</div>

2
reference/guess_time_only.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Guess time variables based on naming pattern</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>guess_time_only.Rd</code></div>
</div>

2
reference/guess_time_only_filter.html
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@ -40,7 +40,7 @@ has to be converted to character class before REDCap upload.'><meta property="og
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
</div>

2
reference/haven_all_levels.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Finish incomplete haven attributes substituting missings with values</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>haven_all_levels.Rd</code></div>
</div>

2
reference/hms2character.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>hms2character.Rd</code></div>
</div>

2
reference/html_tag_wrap.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
<div class="d-none name"><code>html_tag_wrap.Rd</code></div>
</div>

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reference/is_missing.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>is_missing.Rd</code></div>
</div>

2
reference/is_repeated_longitudinal.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div>
</div>

2
reference/mark_complete.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>mark_complete.Rd</code></div>
</div>

2
reference/match_fields_to_form.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Match fields to forms</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>match_fields_to_form.Rd</code></div>
</div>

2
reference/mtcars_redcap.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
<div class="d-none name"><code>mtcars_redcap.Rd</code></div>
</div>

2
reference/named_levels.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Get named vector of factor levels and values</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>named_levels.Rd</code></div>
</div>

2
reference/nav_bar_page.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Nav_bar defining function for shiny ui</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>nav_bar_page.Rd</code></div>
</div>

2
reference/numchar2fct.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Applying var2fct across data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>numchar2fct.Rd</code></div>
</div>

2
reference/parse_data.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Helper to auto-parse un-formatted data with haven and readr</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>parse_data.Rd</code></div>
</div>

2
reference/possibly_roman.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Test if vector can be interpreted as roman numerals</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>possibly_roman.Rd</code></div>
</div>

2
reference/process_user_input.character.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.character.Rd</code></div>
</div>

2
reference/process_user_input.data.frame.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
</div>

2
reference/process_user_input.default.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.default.Rd</code></div>
</div>

2
reference/process_user_input.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.Rd</code></div>
</div>

2
reference/process_user_input.response.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
<div class="d-none name"><code>process_user_input.response.Rd</code></div>
</div>

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reference/read_input.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>read_input.Rd</code></div>
</div>

2
reference/read_redcap_instrument.html
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@ -36,7 +36,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
</div>

2
reference/read_redcap_tables.html
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@ -42,7 +42,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
<div class="d-none name"><code>read_redcap_tables.Rd</code></div>
</div>

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reference/redcap_wider.html
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@ -36,7 +36,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
<div class="d-none name"><code>redcap_wider.Rd</code></div>
</div>

2
reference/redcapcast_data.html
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@ -36,7 +36,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
<div class="d-none name"><code>redcapcast_data.Rd</code></div>
</div>

2
reference/redcapcast_meta.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>REDCap metadata from data base</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
<div class="d-none name"><code>redcapcast_meta.Rd</code></div>
</div>

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reference/replace_curly_quote.html
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@ -36,7 +36,7 @@ on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:image"
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
<div class="d-none name"><code>replace_curly_quote.Rd</code></div>
</div>

2
reference/sanitize_split.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>sanitize_split.Rd</code></div>
</div>

2
reference/set_attr.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Set attributes for named attribute. Appends if attr is NULL</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
<div class="d-none name"><code>set_attr.Rd</code></div>
</div>

2
reference/shiny_cast.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Launch the included Shiny-app for database casting and upload</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
<div class="d-none name"><code>shiny_cast.Rd</code></div>
</div>

2
reference/split_non_repeating_forms.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
</div>

2
reference/strsplitx.html
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@ -36,7 +36,7 @@ easing the split around the defined delimiter, see example."><meta property="og:
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Extended string splitting</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>strsplitx.Rd</code></div>
</div>

2
reference/time_only_correction.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>time_only_correction.Rd</code></div>
</div>

2
reference/var2fct.html
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@ -36,7 +36,7 @@ factoring, but levels character vectors in order of appearance."><meta property=
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Convert vector to factor based on threshold of number of unique levels</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>var2fct.Rd</code></div>
</div>

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reference/vec2choice.html
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@ -34,7 +34,7 @@
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="../logo.png" class="logo" alt=""><h1>Named vector to REDCap choices (`wrapping compact_vec()`)</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/v24.11.3/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
<div class="d-none name"><code>vec2choice.Rd</code></div>
</div>