diff --git a/LICENSE.html b/LICENSE.html
index 01ec143..6861889 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -34,7 +34,7 @@
diff --git a/articles/Shiny-app.html b/articles/Shiny-app.html
index 822f100..806ca88 100644
--- a/articles/Shiny-app.html
+++ b/articles/Shiny-app.html
@@ -66,7 +66,7 @@
diff --git a/authors.html b/authors.html
index d852cff..2b6c358 100644
--- a/authors.html
+++ b/authors.html
@@ -51,7 +51,7 @@
diff --git a/articles/Database-creation.html b/articles/Database-creation.html
index 9d7cd38..fc56a8c 100644
--- a/articles/Database-creation.html
+++ b/articles/Database-creation.html
@@ -66,7 +66,7 @@
diff --git a/articles/REDCapCAST.html b/articles/REDCapCAST.html
index 9b9937c..1c907d8 100644
--- a/articles/REDCapCAST.html
+++ b/articles/REDCapCAST.html
@@ -66,7 +66,7 @@
Database-creation
- Source:vignettes/Database-creation.Rmd
+ Source: vignettes/Database-creation.Rmd
Database-creation.Rmd
REDCapCAST
- Source:vignettes/REDCapCAST.Rmd
+ Source: vignettes/REDCapCAST.Rmd
REDCapCAST.Rmd
Shiny-app
- Source:vignettes/Shiny-app.Rmd
+ Source: vignettes/Shiny-app.Rmd
Shiny-app.Rmd
Citation
-Source: DESCRIPTION
Source: DESCRIPTION
Damsbo A, Egeler P (2024). REDCapCAST: REDCap Metadata Casting and Castellated Data Handling. diff --git a/news/index.html b/news/index.html index 3d4c5ed..22a9a43 100644 --- a/news/index.html +++ b/news/index.html @@ -34,7 +34,7 @@
diff --git a/pkgdown.yml b/pkgdown.yml
index 463a8e2..bb50cdc 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -5,7 +5,7 @@ articles:
Database-creation: Database-creation.html
REDCapCAST: REDCapCAST.html
Shiny-app: Shiny-app.html
-last_built: 2024-11-25T09:26Z
+last_built: 2024-11-25T12:39Z
urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles
diff --git a/reference/REDCapCAST-package.html b/reference/REDCapCAST-package.html
index 2e854a6..810b192 100644
--- a/reference/REDCapCAST-package.html
+++ b/reference/REDCapCAST-package.html
@@ -40,7 +40,7 @@ Casting metadata for REDCap database creation and handling of castellated data u
diff --git a/reference/REDCap_split.html b/reference/REDCap_split.html
index 5aaa610..5937dac 100644
--- a/reference/REDCap_split.html
+++ b/reference/REDCap_split.html
@@ -38,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
diff --git a/reference/all_na.html b/reference/all_na.html
index 56e5dfc..717849d 100644
--- a/reference/all_na.html
+++ b/reference/all_na.html
@@ -34,7 +34,7 @@
diff --git a/reference/as_factor.html b/reference/as_factor.html
index 973ed23..4e6a978 100644
--- a/reference/as_factor.html
+++ b/reference/as_factor.html
@@ -38,7 +38,7 @@ ta loss in case of rich formatted and labelled data.'>
diff --git a/reference/case_match_regex_list.html b/reference/case_match_regex_list.html
index 731dfaa..a246c22 100644
--- a/reference/case_match_regex_list.html
+++ b/reference/case_match_regex_list.html
@@ -42,7 +42,7 @@ naming.">
diff --git a/reference/cast_data_overview.html b/reference/cast_data_overview.html
index 56ea96c..a0649d9 100644
--- a/reference/cast_data_overview.html
+++ b/reference/cast_data_overview.html
@@ -34,7 +34,7 @@
diff --git a/reference/cast_meta_overview.html b/reference/cast_meta_overview.html
index ad3a799..4f1deea 100644
--- a/reference/cast_meta_overview.html
+++ b/reference/cast_meta_overview.html
@@ -34,7 +34,7 @@
diff --git a/reference/char2choice.html b/reference/char2choice.html
index 50a1a78..e108ee4 100644
--- a/reference/char2choice.html
+++ b/reference/char2choice.html
@@ -34,7 +34,7 @@
diff --git a/reference/char2cond.html b/reference/char2cond.html
index e6bb666..4c2b26e 100644
--- a/reference/char2cond.html
+++ b/reference/char2cond.html
@@ -34,7 +34,7 @@
diff --git a/reference/clean_redcap_name.html b/reference/clean_redcap_name.html
index 9208fbc..e0c07ca 100644
--- a/reference/clean_redcap_name.html
+++ b/reference/clean_redcap_name.html
@@ -38,7 +38,7 @@ Trying to make up for different naming conventions.">
diff --git a/reference/compact_vec.html b/reference/compact_vec.html
index fc4f924..ac9bad1 100644
--- a/reference/compact_vec.html
+++ b/reference/compact_vec.html
@@ -34,7 +34,7 @@
diff --git a/reference/create_html_table.html b/reference/create_html_table.html
index a29b7f0..93d43ff 100644
--- a/reference/create_html_table.html
+++ b/reference/create_html_table.html
@@ -34,7 +34,7 @@
diff --git a/reference/create_instrument_meta.html b/reference/create_instrument_meta.html
index 1e6d58d..62921d8 100644
--- a/reference/create_instrument_meta.html
+++ b/reference/create_instrument_meta.html
@@ -40,7 +40,7 @@ production.">
diff --git a/reference/d2w.html b/reference/d2w.html
index b12ae51..bc6f1f3 100644
--- a/reference/d2w.html
+++ b/reference/d2w.html
@@ -34,7 +34,7 @@
diff --git a/reference/doc2dd.html b/reference/doc2dd.html
index 64d63d0..1226d4d 100644
--- a/reference/doc2dd.html
+++ b/reference/doc2dd.html
@@ -44,7 +44,7 @@ data dictionary, but gives a few options for formatting.">
diff --git a/reference/ds2dd.html b/reference/ds2dd.html
index 5dc94f6..10d92e0 100644
--- a/reference/ds2dd.html
+++ b/reference/ds2dd.html
@@ -36,7 +36,7 @@ for a more advanced function.">
diff --git a/reference/ds2dd_detailed.html b/reference/ds2dd_detailed.html
index b81f17d..96be071 100644
--- a/reference/ds2dd_detailed.html
+++ b/reference/ds2dd_detailed.html
@@ -34,7 +34,7 @@
diff --git a/reference/easy_redcap.html b/reference/easy_redcap.html
index eb796a4..9f6234a 100644
--- a/reference/easy_redcap.html
+++ b/reference/easy_redcap.html
@@ -34,7 +34,7 @@
diff --git a/reference/export_redcap_instrument.html b/reference/export_redcap_instrument.html
index 62a0f64..da8cdd7 100644
--- a/reference/export_redcap_instrument.html
+++ b/reference/export_redcap_instrument.html
@@ -40,7 +40,7 @@ production.">
diff --git a/reference/fct2num.html b/reference/fct2num.html
index 4025531..9f54e5c 100644
--- a/reference/fct2num.html
+++ b/reference/fct2num.html
@@ -34,7 +34,7 @@
diff --git a/reference/file_extension.html b/reference/file_extension.html
index fe0e12a..01243ec 100644
--- a/reference/file_extension.html
+++ b/reference/file_extension.html
@@ -34,7 +34,7 @@
diff --git a/reference/focused_metadata.html b/reference/focused_metadata.html
index 98705d7..249882b 100644
--- a/reference/focused_metadata.html
+++ b/reference/focused_metadata.html
@@ -34,7 +34,7 @@
diff --git a/reference/format_subheader.html b/reference/format_subheader.html
index c454b3b..6075107 100644
--- a/reference/format_subheader.html
+++ b/reference/format_subheader.html
@@ -34,7 +34,7 @@
diff --git a/reference/get_api_key.html b/reference/get_api_key.html
index e70e1be..6f8de7b 100644
--- a/reference/get_api_key.html
+++ b/reference/get_api_key.html
@@ -34,7 +34,7 @@
diff --git a/reference/get_attr.html b/reference/get_attr.html
index 1bfa726..778de26 100644
--- a/reference/get_attr.html
+++ b/reference/get_attr.html
@@ -34,7 +34,7 @@
diff --git a/reference/get_id_name.html b/reference/get_id_name.html
index 2d3dbda..5739b14 100644
--- a/reference/get_id_name.html
+++ b/reference/get_id_name.html
@@ -34,7 +34,7 @@
diff --git a/reference/guess_time_only.html b/reference/guess_time_only.html
index e742544..c1dd345 100644
--- a/reference/guess_time_only.html
+++ b/reference/guess_time_only.html
@@ -34,7 +34,7 @@
diff --git a/reference/guess_time_only_filter.html b/reference/guess_time_only_filter.html
index 7f04810..f551f6b 100644
--- a/reference/guess_time_only_filter.html
+++ b/reference/guess_time_only_filter.html
@@ -40,7 +40,7 @@ has to be converted to character class before REDCap upload.'>
diff --git a/reference/haven_all_levels.html b/reference/haven_all_levels.html
index 4955cca..e45f781 100644
--- a/reference/haven_all_levels.html
+++ b/reference/haven_all_levels.html
@@ -34,7 +34,7 @@
diff --git a/reference/hms2character.html b/reference/hms2character.html
index 3e827d2..0e2a06d 100644
--- a/reference/hms2character.html
+++ b/reference/hms2character.html
@@ -34,7 +34,7 @@
diff --git a/reference/html_tag_wrap.html b/reference/html_tag_wrap.html
index b21572d..4f279fd 100644
--- a/reference/html_tag_wrap.html
+++ b/reference/html_tag_wrap.html
@@ -34,7 +34,7 @@
diff --git a/reference/is_missing.html b/reference/is_missing.html
index 708970a..805345c 100644
--- a/reference/is_missing.html
+++ b/reference/is_missing.html
@@ -34,7 +34,7 @@
diff --git a/reference/is_repeated_longitudinal.html b/reference/is_repeated_longitudinal.html
index 3c1ea37..efcf495 100644
--- a/reference/is_repeated_longitudinal.html
+++ b/reference/is_repeated_longitudinal.html
@@ -34,7 +34,7 @@
diff --git a/reference/mark_complete.html b/reference/mark_complete.html
index 7969dfd..f9ed709 100644
--- a/reference/mark_complete.html
+++ b/reference/mark_complete.html
@@ -34,7 +34,7 @@
diff --git a/reference/match_fields_to_form.html b/reference/match_fields_to_form.html
index dfd94e9..d59682a 100644
--- a/reference/match_fields_to_form.html
+++ b/reference/match_fields_to_form.html
@@ -34,7 +34,7 @@
diff --git a/reference/mtcars_redcap.html b/reference/mtcars_redcap.html
index 9d363d1..6aa59af 100644
--- a/reference/mtcars_redcap.html
+++ b/reference/mtcars_redcap.html
@@ -34,7 +34,7 @@
diff --git a/reference/named_levels.html b/reference/named_levels.html
index 0d1b0bf..91b20b8 100644
--- a/reference/named_levels.html
+++ b/reference/named_levels.html
@@ -34,7 +34,7 @@
diff --git a/reference/nav_bar_page.html b/reference/nav_bar_page.html
index 838d97d..376790f 100644
--- a/reference/nav_bar_page.html
+++ b/reference/nav_bar_page.html
@@ -34,7 +34,7 @@
diff --git a/reference/numchar2fct.html b/reference/numchar2fct.html
index 10471bc..30f68e3 100644
--- a/reference/numchar2fct.html
+++ b/reference/numchar2fct.html
@@ -34,7 +34,7 @@
diff --git a/reference/parse_data.html b/reference/parse_data.html
index ac949eb..5c4d9b3 100644
--- a/reference/parse_data.html
+++ b/reference/parse_data.html
@@ -34,7 +34,7 @@
diff --git a/reference/possibly_roman.html b/reference/possibly_roman.html
index 648b51f..3398bac 100644
--- a/reference/possibly_roman.html
+++ b/reference/possibly_roman.html
@@ -34,7 +34,7 @@
diff --git a/reference/process_user_input.character.html b/reference/process_user_input.character.html
index 4c7164e..64b2555 100644
--- a/reference/process_user_input.character.html
+++ b/reference/process_user_input.character.html
@@ -34,7 +34,7 @@
diff --git a/reference/process_user_input.data.frame.html b/reference/process_user_input.data.frame.html
index 99a26d7..6cfb484 100644
--- a/reference/process_user_input.data.frame.html
+++ b/reference/process_user_input.data.frame.html
@@ -34,7 +34,7 @@
diff --git a/reference/process_user_input.default.html b/reference/process_user_input.default.html
index fb2f73e..82328f8 100644
--- a/reference/process_user_input.default.html
+++ b/reference/process_user_input.default.html
@@ -34,7 +34,7 @@
diff --git a/reference/process_user_input.html b/reference/process_user_input.html
index a71ce0d..9a729a7 100644
--- a/reference/process_user_input.html
+++ b/reference/process_user_input.html
@@ -34,7 +34,7 @@
diff --git a/reference/process_user_input.response.html b/reference/process_user_input.response.html
index 6417086..4d95e35 100644
--- a/reference/process_user_input.response.html
+++ b/reference/process_user_input.response.html
@@ -34,7 +34,7 @@
diff --git a/reference/read_input.html b/reference/read_input.html
index 9549838..ff12594 100644
--- a/reference/read_input.html
+++ b/reference/read_input.html
@@ -34,7 +34,7 @@
diff --git a/reference/read_redcap_instrument.html b/reference/read_redcap_instrument.html
index 98cfe17..e7c9dfd 100644
--- a/reference/read_redcap_instrument.html
+++ b/reference/read_redcap_instrument.html
@@ -36,7 +36,7 @@ in keyring.">
diff --git a/reference/read_redcap_tables.html b/reference/read_redcap_tables.html
index 007aaef..98e0af9 100644
--- a/reference/read_redcap_tables.html
+++ b/reference/read_redcap_tables.html
@@ -42,7 +42,7 @@ instruments.">
diff --git a/reference/redcap_wider.html b/reference/redcap_wider.html
index 83c2b5e..729cef0 100644
--- a/reference/redcap_wider.html
+++ b/reference/redcap_wider.html
@@ -36,7 +36,7 @@ Handles longitudinal projects, but not yet repeated instruments.">
diff --git a/reference/redcapcast_data.html b/reference/redcapcast_data.html
index f7ce134..29ff2a7 100644
--- a/reference/redcapcast_data.html
+++ b/reference/redcapcast_data.html
@@ -36,7 +36,7 @@ Contains only synthetic data.">
diff --git a/reference/redcapcast_meta.html b/reference/redcapcast_meta.html
index fbdc6d4..54947e8 100644
--- a/reference/redcapcast_meta.html
+++ b/reference/redcapcast_meta.html
@@ -34,7 +34,7 @@
diff --git a/reference/replace_curly_quote.html b/reference/replace_curly_quote.html
index d838535..ed55531 100644
--- a/reference/replace_curly_quote.html
+++ b/reference/replace_curly_quote.html
@@ -36,7 +36,7 @@ on CRAN. Github:https://github.com/trinker/textclean">
diff --git a/reference/sanitize_split.html b/reference/sanitize_split.html
index ea6df28..33205e2 100644
--- a/reference/sanitize_split.html
+++ b/reference/sanitize_split.html
@@ -34,7 +34,7 @@
diff --git a/reference/set_attr.html b/reference/set_attr.html
index 76d1ab0..d137876 100644
--- a/reference/set_attr.html
+++ b/reference/set_attr.html
@@ -34,7 +34,7 @@
diff --git a/reference/shiny_cast.html b/reference/shiny_cast.html
index 6586742..77b96d6 100644
--- a/reference/shiny_cast.html
+++ b/reference/shiny_cast.html
@@ -34,7 +34,7 @@
diff --git a/reference/split_non_repeating_forms.html b/reference/split_non_repeating_forms.html
index a602a37..9b64d9b 100644
--- a/reference/split_non_repeating_forms.html
+++ b/reference/split_non_repeating_forms.html
@@ -34,7 +34,7 @@
diff --git a/reference/strsplitx.html b/reference/strsplitx.html
index 881fc6e..2b1c96f 100644
--- a/reference/strsplitx.html
+++ b/reference/strsplitx.html
@@ -36,7 +36,7 @@ easing the split around the defined delimiter, see example.">
diff --git a/reference/time_only_correction.html b/reference/time_only_correction.html
index 17ca58f..f9b38d9 100644
--- a/reference/time_only_correction.html
+++ b/reference/time_only_correction.html
@@ -34,7 +34,7 @@
diff --git a/reference/var2fct.html b/reference/var2fct.html
index d57702e..bb4e2d4 100644
--- a/reference/var2fct.html
+++ b/reference/var2fct.html
@@ -36,7 +36,7 @@ factoring, but levels character vectors in order of appearance.">
diff --git a/reference/vec2choice.html b/reference/vec2choice.html
index db1250d..8f5ede1 100644
--- a/reference/vec2choice.html
+++ b/reference/vec2choice.html
@@ -34,7 +34,7 @@
REDCapCAST: REDCap Castellated Data Handling and Metadata Casting
- Source:R/REDCapCAST-package.R
+ Source: R/REDCapCAST-package.R
REDCapCAST-package.Rd
Split REDCap repeating instruments table into multiple tables
- Source:R/REDCap_split.r
+ Source: R/REDCap_split.r
REDCap_split.Rd
Convert labelled vectors to factors while preserving attributes
- Source:R/as_factor.R
+ Source: R/as_factor.R
as_factor.Rd
Overview of REDCapCAST data for shiny
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
cast_data_overview.Rd
Overview of REDCapCAST meta data for shiny
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
cast_meta_overview.Rd
Simple function to generate REDCap choices from character vector
- Source:R/doc2dd.R
+ Source: R/doc2dd.R
char2choice.Rd
Simple function to generate REDCap branching logic from character vector
- Source:R/doc2dd.R
+ Source: R/doc2dd.R
char2cond.Rd
Compacting a vector of any length with or without names
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
compact_vec.Rd
Create two-column HTML table for data piping in REDCap instruments
- Source:R/html_styling.R
+ Source: R/html_styling.R
create_html_table.Rd
DEPRICATED Create zips file with necessary content based on data set
- Source:R/export_redcap_instrument.R
+ Source: R/export_redcap_instrument.R
create_instrument_meta.Rd
Doc table to data dictionary - EARLY, DOCS MISSING
- Source:R/doc2dd.R
+ Source: R/doc2dd.R
doc2dd.Rd
Extract data from stata file for data dictionary
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
ds2dd_detailed.Rd
Secure API key storage and data acquisition in one
- Source:R/easy_redcap.R
+ Source: R/easy_redcap.R
easy_redcap.Rd
Creates zip-file with necessary content to manually add instrument to database
- Source:R/export_redcap_instrument.R
+ Source: R/export_redcap_instrument.R
export_redcap_instrument.Rd
Allows conversion of factor to numeric values preserving original levels
- Source:R/as_factor.R
+ Source: R/as_factor.R
fct2num.Rd
DEPRECATED Helper to import files correctly
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
file_extension.Rd
Sub-header formatting wrapper
- Source:R/html_styling.R
+ Source: R/html_styling.R
format_subheader.Rd
Retrieve project API key if stored, if not, set and retrieve
- Source:R/easy_redcap.R
+ Source: R/easy_redcap.R
get_api_key.Rd
Guess time variables based on naming pattern
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
guess_time_only.Rd
Try at determining which are true time only variables
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
guess_time_only_filter.Rd
Finish incomplete haven attributes substituting missings with values
- Source:R/as_factor.R
+ Source: R/as_factor.R
haven_all_levels.Rd
Change "hms" to "character" for REDCap upload.
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
hms2character.Rd
Simple html tag wrapping for REDCap text formatting
- Source:R/html_styling.R
+ Source: R/html_styling.R
html_tag_wrap.Rd
Test if repeatable or longitudinal
- Source:R/utils.r
+ Source: R/utils.r
is_repeated_longitudinal.Rd
Completion marking based on completed upload
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
mark_complete.Rd
mtcars dataset slightly modified to use for Shiny app upload demonstration
- Source:R/mtcars_redcap.R
+ Source: R/mtcars_redcap.R
mtcars_redcap.Rd
Get named vector of factor levels and values
- Source:R/as_factor.R
+ Source: R/as_factor.R
named_levels.Rd
Nav_bar defining function for shiny ui
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
nav_bar_page.Rd
Applying var2fct across data set
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
numchar2fct.Rd
Helper to auto-parse un-formatted data with haven and readr
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
parse_data.Rd
Test if vector can be interpreted as roman numerals
- Source:R/as_factor.R
+ Source: R/as_factor.R
possibly_roman.Rd
User input processing character
- Source:R/process_user_input.r
+ Source: R/process_user_input.r
process_user_input.character.Rd
User input processing data.frame
- Source:R/process_user_input.r
+ Source: R/process_user_input.r
process_user_input.data.frame.Rd
User input processing default
- Source:R/process_user_input.r
+ Source: R/process_user_input.r
process_user_input.default.Rd
User input processing
- Source:R/process_user_input.r
+ Source: R/process_user_input.r
process_user_input.Rd
User input processing response
- Source:R/process_user_input.r
+ Source: R/process_user_input.r
process_user_input.response.Rd
Flexible file import based on extension
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
read_input.Rd
Convenience function to download complete instrument, using token storage in keyring.
- Source:R/read_redcap_instrument.R
+ Source: R/read_redcap_instrument.R
read_redcap_instrument.Rd
Download REDCap data
- Source:R/read_redcap_tables.R
+ Source: R/read_redcap_tables.R
read_redcap_tables.Rd
Data set for demonstration
- Source:R/redcapcast_data.R
+ Source: R/redcapcast_data.R
redcapcast_data.Rd
REDCap metadata from data base
- Source:R/redcapcast_meta.R
+ Source: R/redcapcast_meta.R
redcapcast_meta.Rd
Replace curly apostrophes and quotes from word
- Source:R/doc2dd.R
+ Source: R/doc2dd.R
replace_curly_quote.Rd
Set attributes for named attribute. Appends if attr is NULL
- Source:R/as_factor.R
+ Source: R/as_factor.R
set_attr.Rd
Launch the included Shiny-app for database casting and upload
- Source:R/shiny_cast.R
+ Source: R/shiny_cast.R
shiny_cast.Rd
Split a data frame into separate tables for each form
- Source:R/utils.r
+ Source: R/utils.r
split_non_repeating_forms.Rd
Correction based on time_only_filter function
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
time_only_correction.Rd
Convert vector to factor based on threshold of number of unique levels
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
var2fct.Rd
Named vector to REDCap choices (`wrapping compact_vec()`)
- Source:R/ds2dd_detailed.R
+ Source: R/ds2dd_detailed.R
vec2choice.Rd