Deploying to gh-pages from @ agdamsbo/REDCapCAST@bd29de23c9 🚀

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agdamsbo 2024-01-29 11:52:58 +00:00
parent feb9d8eb61
commit 5ee93525f8
7 changed files with 244 additions and 108 deletions

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@ -98,23 +98,23 @@ demonstration of the functions.</p>
</h2> </h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -140,12 +140,12 @@ demonstration of the functions.</p>
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@ -157,7 +157,7 @@ demonstration of the functions.</p>
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@ -169,7 +169,7 @@ demonstration of the functions.</p>
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@ -181,13 +181,13 @@ demonstration of the functions.</p>
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@ -202,7 +202,7 @@ demonstration of the functions.</p>
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@ -222,7 +222,7 @@ demonstration of the functions.</p>
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@ -234,15 +234,15 @@ demonstration of the functions.</p>
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@ -254,11 +254,11 @@ demonstration of the functions.</p>
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@ -284,7 +284,7 @@ demonstration of the functions.</p>
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@ -299,15 +299,15 @@ demonstration of the functions.</p>
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@ -326,7 +326,7 @@ demonstration of the functions.</p>
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@ -339,7 +339,7 @@ demonstration of the functions.</p>
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@ -353,15 +353,15 @@ demonstration of the functions.</p>
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@ -371,16 +371,16 @@ demonstration of the functions.</p>
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@ -390,7 +390,7 @@ demonstration of the functions.</p>
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@ -400,7 +400,7 @@ demonstration of the functions.</p>
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@ -410,7 +410,7 @@ demonstration of the functions.</p>
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@ -420,11 +420,11 @@ demonstration of the functions.</p>
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@ -433,7 +433,7 @@ demonstration of the functions.</p>
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@ -447,7 +447,7 @@ demonstration of the functions.</p>
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@ -456,7 +456,7 @@ demonstration of the functions.</p>
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@ -470,7 +470,7 @@ demonstration of the functions.</p>
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@ -478,63 +478,63 @@ demonstration of the functions.</p>
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</style> </style>
@ -1020,23 +1020,23 @@ demonstration of the functions.</p>
</div> </div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -1062,12 +1062,12 @@ demonstration of the functions.</p>
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@ -1079,7 +1079,7 @@ demonstration of the functions.</p>
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@ -1091,7 +1091,7 @@ demonstration of the functions.</p>
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@ -1103,13 +1103,13 @@ demonstration of the functions.</p>
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@ -1124,7 +1124,7 @@ demonstration of the functions.</p>
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@ -1144,7 +1144,7 @@ demonstration of the functions.</p>
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@ -1156,15 +1156,15 @@ demonstration of the functions.</p>
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@ -1176,11 +1176,11 @@ demonstration of the functions.</p>
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@ -1206,7 +1206,7 @@ demonstration of the functions.</p>
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@ -1221,15 +1221,15 @@ demonstration of the functions.</p>
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@ -1248,7 +1248,7 @@ demonstration of the functions.</p>
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@ -1261,7 +1261,7 @@ demonstration of the functions.</p>
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<h4 id="functions-24-1-2">Functions<a class="anchor" aria-label="anchor" href="#functions-24-1-2"></a></h4> <h4 id="functions-24-1-2">Functions<a class="anchor" aria-label="anchor" href="#functions-24-1-2"></a></h4>
<ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li> <ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li>
<li><p>NEW: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: extension of the <code><a href="../reference/ds2dd.html">ds2dd()</a></code>, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the <code><a href="../reference/guess_time_only_filter.html">guess_time_only_filter()</a></code>, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.</p></li> <li><p>NEW: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: extension of the <code><a href="../reference/ds2dd.html">ds2dd()</a></code>, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the <code><a href="../reference/guess_time_only_filter.html">guess_time_only_filter()</a></code>, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.</p></li>
<li><p>NEW: <code><a href="../reference/read_redcap_instrument.html">read_redcap_instrument()</a></code> convenience function to retrieve complete instrument. Goes a little against the focused approach. DETAILED INSTRUCTION IS PENDING.</p></li>
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="other-24-1-2">Other<a class="anchor" aria-label="anchor" href="#other-24-1-2"></a></h4> <h4 id="other-24-1-2">Other<a class="anchor" aria-label="anchor" href="#other-24-1-2"></a></h4>
<p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package.</p> <p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package.</p>
</div> </div>
<div class="section level4">
<h4 id="whishes-before-cran-release-24-1-2">Whishes before CRAN release<a class="anchor" aria-label="anchor" href="#whishes-before-cran-release-24-1-2"></a></h4>
<ul><li><p>Vignette for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
<li><p>Tests for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
</ul></div>
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p> <h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p>

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@ -3,7 +3,7 @@ pkgdown: 2.0.7
pkgdown_sha: ~ pkgdown_sha: ~
articles: articles:
Introduction: Introduction.html Introduction: Introduction.html
last_built: 2024-01-18T14:08Z last_built: 2024-01-29T11:52Z
urls: urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles article: https://agdamsbo.github.io/REDCapCAST/articles

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@ -122,6 +122,11 @@
<dd>Match fields to forms</dd> <dd>Match fields to forms</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
</dt>
<dd>Convenience function to download complete instrument, using token storage in keyring.</dd>
</dl><dl><dt>
<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code> <code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
</dt> </dt>
<dd>Download REDCap data</dd> <dd>Download REDCap data</dd>

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@ -0,0 +1,122 @@
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<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Convenience function to download complete instrument, using token storage in keyring.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">read_redcap_instrument</span><span class="op">(</span></span>
<span> <span class="va">key</span>,</span>
<span> <span class="va">uri</span>,</span>
<span> instrument <span class="op">=</span> <span class="st">"rbans"</span>,</span>
<span> raw_or_label <span class="op">=</span> <span class="st">"raw"</span>,</span>
<span> id_name <span class="op">=</span> <span class="st">"record_id"</span>,</span>
<span> records <span class="op">=</span> <span class="cn">NULL</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>key</dt>
<dd><p>key name in standard keyring for token retrieval.</p></dd>
<dt>uri</dt>
<dd><p>redcap api url</p></dd>
<dt>instrument</dt>
<dd><p>instrument name</p></dd>
<dt>raw_or_label</dt>
<dd><p>raw or label passed to `REDCapR::redcap_read()`</p></dd>
<dt>id_name</dt>
<dd><p>id variable name. Default is "record_id".</p></dd>
<dt>records</dt>
<dd><p>specify the records to download. Index numbers. Numeric vector.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>data.frame</p>
</div>
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<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html</loc>
</url> </url>
<url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html</loc>
</url>
<url> <url>
<loc>https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html</loc> <loc>https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html</loc>
</url> </url>