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data dictionary, but gives a few options for formatting."><title>Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd"><meta property="og:description" content="Works well with `project.aid::docx2list()`.
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Allows defining a database in a text document (see provided template) for
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an easier to use data base creation. This approach allows easier
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collaboration when defining the database. The generic case is a data frame
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with variable names as values in a column. This is a format like the REDCap
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data dictionary, but gives a few options for formatting."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
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<div class="d-none name"><code>doc2dd.Rd</code></div>
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</div>
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<div class="ref-description section level2">
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<p>Works well with `project.aid::docx2list()`.
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Allows defining a database in a text document (see provided template) for
|
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an easier to use data base creation. This approach allows easier
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collaboration when defining the database. The generic case is a data frame
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with variable names as values in a column. This is a format like the REDCap
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data dictionary, but gives a few options for formatting.</p>
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</div>
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<div class="section level2">
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">doc2dd</span><span class="op">(</span></span>
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<span> <span class="va">data</span>,</span>
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<span> <span class="va">instrument.name</span>,</span>
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<span> col.variables <span class="op">=</span> <span class="fl">1</span>,</span>
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<span> list.datetime.format <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>date_dmy <span class="op">=</span> <span class="st">"_dat[eo]$"</span>, time_hh_mm_ss <span class="op">=</span> <span class="st">"_ti[md]e?$"</span><span class="op">)</span>,</span>
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<span> col.description <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> col.condition <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> col.subheader <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> subheader.tag <span class="op">=</span> <span class="st">"h2"</span>,</span>
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<span> condition.minor.sep <span class="op">=</span> <span class="st">","</span>,</span>
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<span> condition.major.sep <span class="op">=</span> <span class="st">";"</span>,</span>
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<span> col.calculation <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> col.choices <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> choices.char.sep <span class="op">=</span> <span class="st">"/"</span>,</span>
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<span> missing.default <span class="op">=</span> <span class="cn">NA</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>data</dt>
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<dd><p>tibble or data.frame with all variable names in one column</p></dd>
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<dt>instrument.name</dt>
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<dd><p>character vector length one. Instrument name.</p></dd>
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<dt>col.variables</dt>
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<dd><p>variable names column (default = 1), allows dplyr
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subsetting</p></dd>
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<dt>list.datetime.format</dt>
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<dd><p>formatting for date/time detection.
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See `case_match_regex_list()`</p></dd>
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<dt>col.description</dt>
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<dd><p>descriptions column, allows dplyr
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subsetting. If empty, variable names will be used.</p></dd>
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<dt>col.condition</dt>
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<dd><p>conditions for branching column, allows dplyr
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subsetting. See `char2cond()`.</p></dd>
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<dt>col.subheader</dt>
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<dd><p>sub-header column, allows dplyr subsetting.
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See `format_subheader()`.</p></dd>
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<dt>subheader.tag</dt>
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<dd><p>formatting tag. Default is "h2"</p></dd>
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<dt>condition.minor.sep</dt>
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<dd><p>condition split minor. See `char2cond()`.
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Default is ",".</p></dd>
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<dt>condition.major.sep</dt>
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<dd><p>condition split major. See `char2cond()`.
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Default is ";".</p></dd>
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<dt>col.calculation</dt>
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<dd><p>calculations column. Has to be written exact.
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Character vector.</p></dd>
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<dt>col.choices</dt>
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<dd><p>choices column. See `char2choice()`.</p></dd>
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<dt>choices.char.sep</dt>
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<dd><p>choices split. See `char2choice()`. Default is "/".</p></dd>
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<dt>missing.default</dt>
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<dd><p>value for missing fields. Default is NA.</p></dd>
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</dl></div>
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<div class="section level2">
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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<p>tibble or data.frame (same as data)</p>
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</div>
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<div class="section level2">
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># data <- dd_inst</span></span></span>
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<span class="r-in"><span><span class="co"># data |> doc2dd(instrument.name = "evt",</span></span></span>
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<span class="r-in"><span><span class="co"># col.description = 3,</span></span></span>
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<span class="r-in"><span><span class="co"># col.condition = 4,</span></span></span>
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<span class="r-in"><span><span class="co"># col.subheader = 2,</span></span></span>
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<span class="r-in"><span><span class="co"># col.calculation = 5,</span></span></span>
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<span class="r-in"><span><span class="co"># col.choices = 6)</span></span></span>
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<span class="r-in"></span>
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</code></pre></div>
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<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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