My projects in health data. More to follow
This commit is contained in:
AG Damsbo
parent
13a5e4a8aa
commit
402399ad15
468
_site/health-data.html
Normal file
468
_site/health-data.html
Normal file
@ -0,0 +1,468 @@
|
||||
<!DOCTYPE html>
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
|
||||
|
||||
<meta charset="utf-8">
|
||||
<meta name="generator" content="quarto-1.3.340">
|
||||
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
|
||||
|
||||
|
||||
<title>Andreas - Health Data</title>
|
||||
<style>
|
||||
code{white-space: pre-wrap;}
|
||||
span.smallcaps{font-variant: small-caps;}
|
||||
div.columns{display: flex; gap: min(4vw, 1.5em);}
|
||||
div.column{flex: auto; overflow-x: auto;}
|
||||
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||||
ul.task-list{list-style: none;}
|
||||
ul.task-list li input[type="checkbox"] {
|
||||
width: 0.8em;
|
||||
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
|
||||
vertical-align: middle;
|
||||
}
|
||||
</style>
|
||||
|
||||
|
||||
<script src="site_libs/quarto-nav/quarto-nav.js"></script>
|
||||
<script src="site_libs/quarto-nav/headroom.min.js"></script>
|
||||
<script src="site_libs/clipboard/clipboard.min.js"></script>
|
||||
<script src="site_libs/quarto-search/autocomplete.umd.js"></script>
|
||||
<script src="site_libs/quarto-search/fuse.min.js"></script>
|
||||
<script src="site_libs/quarto-search/quarto-search.js"></script>
|
||||
<meta name="quarto:offset" content="./">
|
||||
<script src="site_libs/quarto-listing/list.min.js"></script>
|
||||
<script src="site_libs/quarto-listing/quarto-listing.js"></script>
|
||||
<script src="site_libs/quarto-html/quarto.js"></script>
|
||||
<script src="site_libs/quarto-html/popper.min.js"></script>
|
||||
<script src="site_libs/quarto-html/tippy.umd.min.js"></script>
|
||||
<script src="site_libs/quarto-html/anchor.min.js"></script>
|
||||
<link href="site_libs/quarto-html/tippy.css" rel="stylesheet">
|
||||
<link href="site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="stylesheet" id="quarto-text-highlighting-styles">
|
||||
<script src="site_libs/bootstrap/bootstrap.min.js"></script>
|
||||
<link href="site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
|
||||
<link href="site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="dark">
|
||||
<script id="quarto-search-options" type="application/json">{
|
||||
"location": "navbar",
|
||||
"copy-button": false,
|
||||
"collapse-after": 3,
|
||||
"panel-placement": "end",
|
||||
"type": "overlay",
|
||||
"limit": 20,
|
||||
"language": {
|
||||
"search-no-results-text": "No results",
|
||||
"search-matching-documents-text": "matching documents",
|
||||
"search-copy-link-title": "Copy link to search",
|
||||
"search-hide-matches-text": "Hide additional matches",
|
||||
"search-more-match-text": "more match in this document",
|
||||
"search-more-matches-text": "more matches in this document",
|
||||
"search-clear-button-title": "Clear",
|
||||
"search-detached-cancel-button-title": "Cancel",
|
||||
"search-submit-button-title": "Submit"
|
||||
}
|
||||
}</script>
|
||||
<script>
|
||||
|
||||
window.document.addEventListener("DOMContentLoaded", function (_event) {
|
||||
const listingTargetEl = window.document.querySelector('#listing-listing .list');
|
||||
if (!listingTargetEl) {
|
||||
// No listing discovered, do not attach.
|
||||
return;
|
||||
}
|
||||
|
||||
const options = {
|
||||
valueNames: ['listing-title','listing-author','listing-date','listing-image','listing-description','listing-categories',{ data: ['index'] },{ data: ['categories'] },{ data: ['listing-date-sort'] },{ data: ['listing-file-modified-sort'] }],
|
||||
|
||||
searchColumns: ["listing-title","listing-author","listing-date","listing-image","listing-description","listing-categories"],
|
||||
};
|
||||
|
||||
window['quarto-listings'] = window['quarto-listings'] || {};
|
||||
window['quarto-listings']['listing-listing'] = new List('listing-listing', options);
|
||||
|
||||
if (window['quarto-listing-loaded']) {
|
||||
window['quarto-listing-loaded']();
|
||||
}
|
||||
});
|
||||
|
||||
window.addEventListener('hashchange',() => {
|
||||
if (window['quarto-listing-loaded']) {
|
||||
window['quarto-listing-loaded']();
|
||||
}
|
||||
})
|
||||
</script>
|
||||
|
||||
<script src="https://polyfill.io/v3/polyfill.min.js?features=es6"></script>
|
||||
<script src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-chtml-full.js" type="text/javascript"></script>
|
||||
|
||||
</head>
|
||||
|
||||
<body class="nav-fixed">
|
||||
|
||||
<div id="quarto-search-results"></div>
|
||||
<header id="quarto-header" class="headroom fixed-top">
|
||||
<nav class="navbar navbar-expand-lg navbar-dark ">
|
||||
<div class="navbar-container container-fluid">
|
||||
<div class="navbar-brand-container">
|
||||
<a class="navbar-brand" href="./index.html">
|
||||
<span class="navbar-title">Andreas</span>
|
||||
</a>
|
||||
</div>
|
||||
<div id="quarto-search" class="" title="Search"></div>
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
<div class="collapse navbar-collapse" id="navbarCollapse">
|
||||
<ul class="navbar-nav navbar-nav-scroll me-auto">
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="./index.html" rel="" target="">
|
||||
<span class="menu-text">Home</span></a>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="./food.html" rel="" target="">
|
||||
<span class="menu-text">Recepies</span></a>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="./about.html" rel="" target="">
|
||||
<span class="menu-text">About</span></a>
|
||||
</li>
|
||||
</ul>
|
||||
<ul class="navbar-nav navbar-nav-scroll ms-auto">
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="https://git.nikohuru.dk/andreas/web" rel="" target="">
|
||||
<span class="menu-text">Source</span></a>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="quarto-navbar-tools">
|
||||
</div>
|
||||
</div> <!-- /navcollapse -->
|
||||
</div> <!-- /container-fluid -->
|
||||
</nav>
|
||||
</header>
|
||||
<!-- content -->
|
||||
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
|
||||
<!-- sidebar -->
|
||||
<!-- margin-sidebar -->
|
||||
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
|
||||
|
||||
<h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-listing-category category-default"><div class="category" data-category="">All <span class="quarto-category-count">(1)</span></div><div class="category" data-category="Consultant">Consultant <span class="quarto-category-count">(1)</span></div><div class="category" data-category="Project">Project <span class="quarto-category-count">(1)</span></div><div class="category" data-category="R">R <span class="quarto-category-count">(1)</span></div><div class="category" data-category="REDDCap">REDDCap <span class="quarto-category-count">(1)</span></div></div></div>
|
||||
<!-- main -->
|
||||
<main class="content" id="quarto-document-content">
|
||||
|
||||
<header id="title-block-header" class="quarto-title-block default">
|
||||
<div class="quarto-title">
|
||||
<h1 class="title">Health Data</h1>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<div class="quarto-title-meta">
|
||||
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
</header>
|
||||
|
||||
<div class="topbr">
|
||||
<p style="font-size: 18px">During my work in clinical research I have aquired a special set of skills in working with data collection, data bases and data analysis. I am very much interested in sharing these skils and knowledge.</p>
|
||||
<p style="font-size: 18px">I am primarily working with R and REDCap. I have published one R package to CRAN and am actively maintaining two other packages on GitHub (on is on its way to CRAN). I am also working on a handbook for clinical researchers on working with R and REDCap.</p>
|
||||
<p style="font-size: 18px">I have work as a data science consultant on a few projects. Here I will also share a few of them as a portfolio. Please don't hesitate to [contact me](mailto:andreas@gdamsbo.dk) if you need help on a project.</p>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
|
||||
<div class="quarto-listing quarto-listing-container-grid" id="listing-listing">
|
||||
<div class="list grid quarto-listing-cols-3">
|
||||
<div class="g-col-1" data-index="0" data-categories="REDDCap,Project,R,Consultant" data-listing-date-sort="1682632800000" data-listing-file-modified-sort="1682668183770" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="1">
|
||||
<a href="./health_data/ancle.html" class="quarto-grid-link">
|
||||
<div class="quarto-grid-item card h-100 card-left">
|
||||
<div class="listing-item-img-placeholder card-img-top" style="height: 150px;"> </div>
|
||||
<div class="card-body post-contents">
|
||||
<h5 class="no-anchor card-title listing-title">
|
||||
Project: Foot database
|
||||
</h5>
|
||||
<div class="listing-categories">
|
||||
<div class="listing-category" onclick="window.quartoListingCategory('REDDCap'); return false;">
|
||||
REDDCap
|
||||
</div>
|
||||
<div class="listing-category" onclick="window.quartoListingCategory('Project'); return false;">
|
||||
Project
|
||||
</div>
|
||||
<div class="listing-category" onclick="window.quartoListingCategory('R'); return false;">
|
||||
R
|
||||
</div>
|
||||
<div class="listing-category" onclick="window.quartoListingCategory('Consultant'); return false;">
|
||||
Consultant
|
||||
</div>
|
||||
</div>
|
||||
<div class="card-text listing-description">
|
||||
Comprehensive data and data base migration to continue data collection.
|
||||
</div>
|
||||
<div class="card-attribution card-text-small justify">
|
||||
<div class="listing-author">
|
||||
|
||||
</div>
|
||||
<div class="listing-date">
|
||||
Apr 28, 2023
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</div>
|
||||
</a>
|
||||
</div>
|
||||
</div>
|
||||
<div class="listing-no-matching d-none">
|
||||
No matching items
|
||||
</div>
|
||||
</div></main> <!-- /main -->
|
||||
<script id="quarto-html-after-body" type="application/javascript">
|
||||
window.document.addEventListener("DOMContentLoaded", function (event) {
|
||||
const toggleBodyColorMode = (bsSheetEl) => {
|
||||
const mode = bsSheetEl.getAttribute("data-mode");
|
||||
const bodyEl = window.document.querySelector("body");
|
||||
if (mode === "dark") {
|
||||
bodyEl.classList.add("quarto-dark");
|
||||
bodyEl.classList.remove("quarto-light");
|
||||
} else {
|
||||
bodyEl.classList.add("quarto-light");
|
||||
bodyEl.classList.remove("quarto-dark");
|
||||
}
|
||||
}
|
||||
const toggleBodyColorPrimary = () => {
|
||||
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
|
||||
if (bsSheetEl) {
|
||||
toggleBodyColorMode(bsSheetEl);
|
||||
}
|
||||
}
|
||||
toggleBodyColorPrimary();
|
||||
const icon = "";
|
||||
const anchorJS = new window.AnchorJS();
|
||||
anchorJS.options = {
|
||||
placement: 'right',
|
||||
icon: icon
|
||||
};
|
||||
anchorJS.add('.anchored');
|
||||
const isCodeAnnotation = (el) => {
|
||||
for (const clz of el.classList) {
|
||||
if (clz.startsWith('code-annotation-')) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
return false;
|
||||
}
|
||||
const clipboard = new window.ClipboardJS('.code-copy-button', {
|
||||
text: function(trigger) {
|
||||
const codeEl = trigger.previousElementSibling.cloneNode(true);
|
||||
for (const childEl of codeEl.children) {
|
||||
if (isCodeAnnotation(childEl)) {
|
||||
childEl.remove();
|
||||
}
|
||||
}
|
||||
return codeEl.innerText;
|
||||
}
|
||||
});
|
||||
clipboard.on('success', function(e) {
|
||||
// button target
|
||||
const button = e.trigger;
|
||||
// don't keep focus
|
||||
button.blur();
|
||||
// flash "checked"
|
||||
button.classList.add('code-copy-button-checked');
|
||||
var currentTitle = button.getAttribute("title");
|
||||
button.setAttribute("title", "Copied!");
|
||||
let tooltip;
|
||||
if (window.bootstrap) {
|
||||
button.setAttribute("data-bs-toggle", "tooltip");
|
||||
button.setAttribute("data-bs-placement", "left");
|
||||
button.setAttribute("data-bs-title", "Copied!");
|
||||
tooltip = new bootstrap.Tooltip(button,
|
||||
{ trigger: "manual",
|
||||
customClass: "code-copy-button-tooltip",
|
||||
offset: [0, -8]});
|
||||
tooltip.show();
|
||||
}
|
||||
setTimeout(function() {
|
||||
if (tooltip) {
|
||||
tooltip.hide();
|
||||
button.removeAttribute("data-bs-title");
|
||||
button.removeAttribute("data-bs-toggle");
|
||||
button.removeAttribute("data-bs-placement");
|
||||
}
|
||||
button.setAttribute("title", currentTitle);
|
||||
button.classList.remove('code-copy-button-checked');
|
||||
}, 1000);
|
||||
// clear code selection
|
||||
e.clearSelection();
|
||||
});
|
||||
function tippyHover(el, contentFn) {
|
||||
const config = {
|
||||
allowHTML: true,
|
||||
content: contentFn,
|
||||
maxWidth: 500,
|
||||
delay: 100,
|
||||
arrow: false,
|
||||
appendTo: function(el) {
|
||||
return el.parentElement;
|
||||
},
|
||||
interactive: true,
|
||||
interactiveBorder: 10,
|
||||
theme: 'quarto',
|
||||
placement: 'bottom-start'
|
||||
};
|
||||
window.tippy(el, config);
|
||||
}
|
||||
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
|
||||
for (var i=0; i<noterefs.length; i++) {
|
||||
const ref = noterefs[i];
|
||||
tippyHover(ref, function() {
|
||||
// use id or data attribute instead here
|
||||
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
|
||||
try { href = new URL(href).hash; } catch {}
|
||||
const id = href.replace(/^#\/?/, "");
|
||||
const note = window.document.getElementById(id);
|
||||
return note.innerHTML;
|
||||
});
|
||||
}
|
||||
let selectedAnnoteEl;
|
||||
const selectorForAnnotation = ( cell, annotation) => {
|
||||
let cellAttr = 'data-code-cell="' + cell + '"';
|
||||
let lineAttr = 'data-code-annotation="' + annotation + '"';
|
||||
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
|
||||
return selector;
|
||||
}
|
||||
const selectCodeLines = (annoteEl) => {
|
||||
const doc = window.document;
|
||||
const targetCell = annoteEl.getAttribute("data-target-cell");
|
||||
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
|
||||
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
|
||||
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
|
||||
const lineIds = lines.map((line) => {
|
||||
return targetCell + "-" + line;
|
||||
})
|
||||
let top = null;
|
||||
let height = null;
|
||||
let parent = null;
|
||||
if (lineIds.length > 0) {
|
||||
//compute the position of the single el (top and bottom and make a div)
|
||||
const el = window.document.getElementById(lineIds[0]);
|
||||
top = el.offsetTop;
|
||||
height = el.offsetHeight;
|
||||
parent = el.parentElement.parentElement;
|
||||
if (lineIds.length > 1) {
|
||||
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
|
||||
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
|
||||
height = bottom - top;
|
||||
}
|
||||
if (top !== null && height !== null && parent !== null) {
|
||||
// cook up a div (if necessary) and position it
|
||||
let div = window.document.getElementById("code-annotation-line-highlight");
|
||||
if (div === null) {
|
||||
div = window.document.createElement("div");
|
||||
div.setAttribute("id", "code-annotation-line-highlight");
|
||||
div.style.position = 'absolute';
|
||||
parent.appendChild(div);
|
||||
}
|
||||
div.style.top = top - 2 + "px";
|
||||
div.style.height = height + 4 + "px";
|
||||
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
|
||||
if (gutterDiv === null) {
|
||||
gutterDiv = window.document.createElement("div");
|
||||
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
|
||||
gutterDiv.style.position = 'absolute';
|
||||
const codeCell = window.document.getElementById(targetCell);
|
||||
const gutter = codeCell.querySelector('.code-annotation-gutter');
|
||||
gutter.appendChild(gutterDiv);
|
||||
}
|
||||
gutterDiv.style.top = top - 2 + "px";
|
||||
gutterDiv.style.height = height + 4 + "px";
|
||||
}
|
||||
selectedAnnoteEl = annoteEl;
|
||||
}
|
||||
};
|
||||
const unselectCodeLines = () => {
|
||||
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
|
||||
elementsIds.forEach((elId) => {
|
||||
const div = window.document.getElementById(elId);
|
||||
if (div) {
|
||||
div.remove();
|
||||
}
|
||||
});
|
||||
selectedAnnoteEl = undefined;
|
||||
};
|
||||
// Attach click handler to the DT
|
||||
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
|
||||
for (const annoteDlNode of annoteDls) {
|
||||
annoteDlNode.addEventListener('click', (event) => {
|
||||
const clickedEl = event.target;
|
||||
if (clickedEl !== selectedAnnoteEl) {
|
||||
unselectCodeLines();
|
||||
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
|
||||
if (activeEl) {
|
||||
activeEl.classList.remove('code-annotation-active');
|
||||
}
|
||||
selectCodeLines(clickedEl);
|
||||
clickedEl.classList.add('code-annotation-active');
|
||||
} else {
|
||||
// Unselect the line
|
||||
unselectCodeLines();
|
||||
clickedEl.classList.remove('code-annotation-active');
|
||||
}
|
||||
});
|
||||
}
|
||||
const findCites = (el) => {
|
||||
const parentEl = el.parentElement;
|
||||
if (parentEl) {
|
||||
const cites = parentEl.dataset.cites;
|
||||
if (cites) {
|
||||
return {
|
||||
el,
|
||||
cites: cites.split(' ')
|
||||
};
|
||||
} else {
|
||||
return findCites(el.parentElement)
|
||||
}
|
||||
} else {
|
||||
return undefined;
|
||||
}
|
||||
};
|
||||
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
|
||||
for (var i=0; i<bibliorefs.length; i++) {
|
||||
const ref = bibliorefs[i];
|
||||
const citeInfo = findCites(ref);
|
||||
if (citeInfo) {
|
||||
tippyHover(citeInfo.el, function() {
|
||||
var popup = window.document.createElement('div');
|
||||
citeInfo.cites.forEach(function(cite) {
|
||||
var citeDiv = window.document.createElement('div');
|
||||
citeDiv.classList.add('hanging-indent');
|
||||
citeDiv.classList.add('csl-entry');
|
||||
var biblioDiv = window.document.getElementById('ref-' + cite);
|
||||
if (biblioDiv) {
|
||||
citeDiv.innerHTML = biblioDiv.innerHTML;
|
||||
}
|
||||
popup.appendChild(citeDiv);
|
||||
});
|
||||
return popup.innerHTML;
|
||||
});
|
||||
}
|
||||
}
|
||||
});
|
||||
</script>
|
||||
</div> <!-- /content -->
|
||||
<footer class="footer">
|
||||
<div class="nav-footer">
|
||||
<div class="nav-footer-left">
|
||||
|
||||
</div>
|
||||
<div class="nav-footer-center">Made using <a href="https://quarto.org/">Quarto</a>, Copyright 2023, Andreas Gammelgaard Damsbo</div>
|
||||
<div class="nav-footer-right">
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</footer>
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
435
_site/health_data/ancle.html
Normal file
435
_site/health_data/ancle.html
Normal file
@ -0,0 +1,435 @@
|
||||
<!DOCTYPE html>
|
||||
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
|
||||
|
||||
<meta charset="utf-8">
|
||||
<meta name="generator" content="quarto-1.3.340">
|
||||
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
|
||||
|
||||
<meta name="dcterms.date" content="2023-04-28">
|
||||
<meta name="description" content="Comprehensive data and data base migration to continue data collection.">
|
||||
|
||||
<title>Andreas - Project: Foot database</title>
|
||||
<style>
|
||||
code{white-space: pre-wrap;}
|
||||
span.smallcaps{font-variant: small-caps;}
|
||||
div.columns{display: flex; gap: min(4vw, 1.5em);}
|
||||
div.column{flex: auto; overflow-x: auto;}
|
||||
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
|
||||
ul.task-list{list-style: none;}
|
||||
ul.task-list li input[type="checkbox"] {
|
||||
width: 0.8em;
|
||||
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
|
||||
vertical-align: middle;
|
||||
}
|
||||
</style>
|
||||
|
||||
|
||||
<script src="../site_libs/quarto-nav/quarto-nav.js"></script>
|
||||
<script src="../site_libs/quarto-nav/headroom.min.js"></script>
|
||||
<script src="../site_libs/clipboard/clipboard.min.js"></script>
|
||||
<script src="../site_libs/quarto-search/autocomplete.umd.js"></script>
|
||||
<script src="../site_libs/quarto-search/fuse.min.js"></script>
|
||||
<script src="../site_libs/quarto-search/quarto-search.js"></script>
|
||||
<meta name="quarto:offset" content="../">
|
||||
<script src="../site_libs/quarto-html/quarto.js"></script>
|
||||
<script src="../site_libs/quarto-html/popper.min.js"></script>
|
||||
<script src="../site_libs/quarto-html/tippy.umd.min.js"></script>
|
||||
<script src="../site_libs/quarto-html/anchor.min.js"></script>
|
||||
<link href="../site_libs/quarto-html/tippy.css" rel="stylesheet">
|
||||
<link href="../site_libs/quarto-html/quarto-syntax-highlighting-dark.css" rel="stylesheet" id="quarto-text-highlighting-styles">
|
||||
<script src="../site_libs/bootstrap/bootstrap.min.js"></script>
|
||||
<link href="../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
|
||||
<link href="../site_libs/bootstrap/bootstrap.min.css" rel="stylesheet" id="quarto-bootstrap" data-mode="dark">
|
||||
<script id="quarto-search-options" type="application/json">{
|
||||
"location": "navbar",
|
||||
"copy-button": false,
|
||||
"collapse-after": 3,
|
||||
"panel-placement": "end",
|
||||
"type": "overlay",
|
||||
"limit": 20,
|
||||
"language": {
|
||||
"search-no-results-text": "No results",
|
||||
"search-matching-documents-text": "matching documents",
|
||||
"search-copy-link-title": "Copy link to search",
|
||||
"search-hide-matches-text": "Hide additional matches",
|
||||
"search-more-match-text": "more match in this document",
|
||||
"search-more-matches-text": "more matches in this document",
|
||||
"search-clear-button-title": "Clear",
|
||||
"search-detached-cancel-button-title": "Cancel",
|
||||
"search-submit-button-title": "Submit"
|
||||
}
|
||||
}</script>
|
||||
|
||||
|
||||
</head>
|
||||
|
||||
<body class="nav-fixed">
|
||||
|
||||
<div id="quarto-search-results"></div>
|
||||
<header id="quarto-header" class="headroom fixed-top">
|
||||
<nav class="navbar navbar-expand-lg navbar-dark ">
|
||||
<div class="navbar-container container-fluid">
|
||||
<div class="navbar-brand-container">
|
||||
<a class="navbar-brand" href="../index.html">
|
||||
<span class="navbar-title">Andreas</span>
|
||||
</a>
|
||||
</div>
|
||||
<div id="quarto-search" class="" title="Search"></div>
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" aria-expanded="false" aria-label="Toggle navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
<div class="collapse navbar-collapse" id="navbarCollapse">
|
||||
<ul class="navbar-nav navbar-nav-scroll me-auto">
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../index.html" rel="" target="">
|
||||
<span class="menu-text">Home</span></a>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../food.html" rel="" target="">
|
||||
<span class="menu-text">Recepies</span></a>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../about.html" rel="" target="">
|
||||
<span class="menu-text">About</span></a>
|
||||
</li>
|
||||
</ul>
|
||||
<ul class="navbar-nav navbar-nav-scroll ms-auto">
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="https://git.nikohuru.dk/andreas/web" rel="" target="">
|
||||
<span class="menu-text">Source</span></a>
|
||||
</li>
|
||||
</ul>
|
||||
<div class="quarto-navbar-tools">
|
||||
</div>
|
||||
</div> <!-- /navcollapse -->
|
||||
</div> <!-- /container-fluid -->
|
||||
</nav>
|
||||
</header>
|
||||
<!-- content -->
|
||||
<div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
|
||||
<!-- sidebar -->
|
||||
<!-- margin-sidebar -->
|
||||
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
|
||||
<nav id="TOC" role="doc-toc" class="toc-active">
|
||||
<h2 id="toc-title">On this page</h2>
|
||||
|
||||
<ul>
|
||||
<li><a href="#background" id="toc-background" class="nav-link active" data-scroll-target="#background">Background</a></li>
|
||||
<li><a href="#database" id="toc-database" class="nav-link" data-scroll-target="#database">Database</a></li>
|
||||
<li><a href="#coding" id="toc-coding" class="nav-link" data-scroll-target="#coding">Coding</a></li>
|
||||
<li><a href="#extend-of-the-work" id="toc-extend-of-the-work" class="nav-link" data-scroll-target="#extend-of-the-work">Extend of the work</a></li>
|
||||
</ul>
|
||||
</nav>
|
||||
</div>
|
||||
<!-- main -->
|
||||
<main class="content" id="quarto-document-content">
|
||||
|
||||
<header id="title-block-header" class="quarto-title-block default">
|
||||
<div class="quarto-title">
|
||||
<h1 class="title">Project: Foot database</h1>
|
||||
<div class="quarto-categories">
|
||||
<div class="quarto-category">REDDCap</div>
|
||||
<div class="quarto-category">Project</div>
|
||||
<div class="quarto-category">R</div>
|
||||
<div class="quarto-category">Consultant</div>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
<div>
|
||||
<div class="description">
|
||||
Comprehensive data and data base migration to continue data collection.
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
<div class="quarto-title-meta">
|
||||
|
||||
|
||||
<div>
|
||||
<div class="quarto-title-meta-heading">Published</div>
|
||||
<div class="quarto-title-meta-contents">
|
||||
<p class="date">April 28, 2023</p>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
</header>
|
||||
|
||||
<section id="background" class="level2">
|
||||
<h2 class="anchored" data-anchor-id="background">Background</h2>
|
||||
<p>This project is the most comprehensive data base migration yet.</p>
|
||||
<p>The clients wis, was for an old Microsoft Access data base to be migrated to REDCap, for continous use and data collection.</p>
|
||||
</section>
|
||||
<section id="database" class="level2">
|
||||
<h2 class="anchored" data-anchor-id="database">Database</h2>
|
||||
<p>Here are a few characteristics:</p>
|
||||
<ul>
|
||||
<li><p>Around 3000 entries</p></li>
|
||||
<li><p>5 collection instruments, 4 of them were to be used as repeatable instruments.</p></li>
|
||||
<li><p>80 variables</p></li>
|
||||
</ul>
|
||||
</section>
|
||||
<section id="coding" class="level2">
|
||||
<h2 class="anchored" data-anchor-id="coding">Coding</h2>
|
||||
<p>I have collected my scripts in a repository, which will be made public when I have finished the work.</p>
|
||||
</section>
|
||||
<section id="extend-of-the-work" class="level2">
|
||||
<h2 class="anchored" data-anchor-id="extend-of-the-work">Extend of the work</h2>
|
||||
|
||||
|
||||
</section>
|
||||
|
||||
</main> <!-- /main -->
|
||||
<script id="quarto-html-after-body" type="application/javascript">
|
||||
window.document.addEventListener("DOMContentLoaded", function (event) {
|
||||
const toggleBodyColorMode = (bsSheetEl) => {
|
||||
const mode = bsSheetEl.getAttribute("data-mode");
|
||||
const bodyEl = window.document.querySelector("body");
|
||||
if (mode === "dark") {
|
||||
bodyEl.classList.add("quarto-dark");
|
||||
bodyEl.classList.remove("quarto-light");
|
||||
} else {
|
||||
bodyEl.classList.add("quarto-light");
|
||||
bodyEl.classList.remove("quarto-dark");
|
||||
}
|
||||
}
|
||||
const toggleBodyColorPrimary = () => {
|
||||
const bsSheetEl = window.document.querySelector("link#quarto-bootstrap");
|
||||
if (bsSheetEl) {
|
||||
toggleBodyColorMode(bsSheetEl);
|
||||
}
|
||||
}
|
||||
toggleBodyColorPrimary();
|
||||
const icon = "";
|
||||
const anchorJS = new window.AnchorJS();
|
||||
anchorJS.options = {
|
||||
placement: 'right',
|
||||
icon: icon
|
||||
};
|
||||
anchorJS.add('.anchored');
|
||||
const isCodeAnnotation = (el) => {
|
||||
for (const clz of el.classList) {
|
||||
if (clz.startsWith('code-annotation-')) {
|
||||
return true;
|
||||
}
|
||||
}
|
||||
return false;
|
||||
}
|
||||
const clipboard = new window.ClipboardJS('.code-copy-button', {
|
||||
text: function(trigger) {
|
||||
const codeEl = trigger.previousElementSibling.cloneNode(true);
|
||||
for (const childEl of codeEl.children) {
|
||||
if (isCodeAnnotation(childEl)) {
|
||||
childEl.remove();
|
||||
}
|
||||
}
|
||||
return codeEl.innerText;
|
||||
}
|
||||
});
|
||||
clipboard.on('success', function(e) {
|
||||
// button target
|
||||
const button = e.trigger;
|
||||
// don't keep focus
|
||||
button.blur();
|
||||
// flash "checked"
|
||||
button.classList.add('code-copy-button-checked');
|
||||
var currentTitle = button.getAttribute("title");
|
||||
button.setAttribute("title", "Copied!");
|
||||
let tooltip;
|
||||
if (window.bootstrap) {
|
||||
button.setAttribute("data-bs-toggle", "tooltip");
|
||||
button.setAttribute("data-bs-placement", "left");
|
||||
button.setAttribute("data-bs-title", "Copied!");
|
||||
tooltip = new bootstrap.Tooltip(button,
|
||||
{ trigger: "manual",
|
||||
customClass: "code-copy-button-tooltip",
|
||||
offset: [0, -8]});
|
||||
tooltip.show();
|
||||
}
|
||||
setTimeout(function() {
|
||||
if (tooltip) {
|
||||
tooltip.hide();
|
||||
button.removeAttribute("data-bs-title");
|
||||
button.removeAttribute("data-bs-toggle");
|
||||
button.removeAttribute("data-bs-placement");
|
||||
}
|
||||
button.setAttribute("title", currentTitle);
|
||||
button.classList.remove('code-copy-button-checked');
|
||||
}, 1000);
|
||||
// clear code selection
|
||||
e.clearSelection();
|
||||
});
|
||||
function tippyHover(el, contentFn) {
|
||||
const config = {
|
||||
allowHTML: true,
|
||||
content: contentFn,
|
||||
maxWidth: 500,
|
||||
delay: 100,
|
||||
arrow: false,
|
||||
appendTo: function(el) {
|
||||
return el.parentElement;
|
||||
},
|
||||
interactive: true,
|
||||
interactiveBorder: 10,
|
||||
theme: 'quarto',
|
||||
placement: 'bottom-start'
|
||||
};
|
||||
window.tippy(el, config);
|
||||
}
|
||||
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
|
||||
for (var i=0; i<noterefs.length; i++) {
|
||||
const ref = noterefs[i];
|
||||
tippyHover(ref, function() {
|
||||
// use id or data attribute instead here
|
||||
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
|
||||
try { href = new URL(href).hash; } catch {}
|
||||
const id = href.replace(/^#\/?/, "");
|
||||
const note = window.document.getElementById(id);
|
||||
return note.innerHTML;
|
||||
});
|
||||
}
|
||||
let selectedAnnoteEl;
|
||||
const selectorForAnnotation = ( cell, annotation) => {
|
||||
let cellAttr = 'data-code-cell="' + cell + '"';
|
||||
let lineAttr = 'data-code-annotation="' + annotation + '"';
|
||||
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
|
||||
return selector;
|
||||
}
|
||||
const selectCodeLines = (annoteEl) => {
|
||||
const doc = window.document;
|
||||
const targetCell = annoteEl.getAttribute("data-target-cell");
|
||||
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
|
||||
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
|
||||
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
|
||||
const lineIds = lines.map((line) => {
|
||||
return targetCell + "-" + line;
|
||||
})
|
||||
let top = null;
|
||||
let height = null;
|
||||
let parent = null;
|
||||
if (lineIds.length > 0) {
|
||||
//compute the position of the single el (top and bottom and make a div)
|
||||
const el = window.document.getElementById(lineIds[0]);
|
||||
top = el.offsetTop;
|
||||
height = el.offsetHeight;
|
||||
parent = el.parentElement.parentElement;
|
||||
if (lineIds.length > 1) {
|
||||
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
|
||||
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
|
||||
height = bottom - top;
|
||||
}
|
||||
if (top !== null && height !== null && parent !== null) {
|
||||
// cook up a div (if necessary) and position it
|
||||
let div = window.document.getElementById("code-annotation-line-highlight");
|
||||
if (div === null) {
|
||||
div = window.document.createElement("div");
|
||||
div.setAttribute("id", "code-annotation-line-highlight");
|
||||
div.style.position = 'absolute';
|
||||
parent.appendChild(div);
|
||||
}
|
||||
div.style.top = top - 2 + "px";
|
||||
div.style.height = height + 4 + "px";
|
||||
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
|
||||
if (gutterDiv === null) {
|
||||
gutterDiv = window.document.createElement("div");
|
||||
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
|
||||
gutterDiv.style.position = 'absolute';
|
||||
const codeCell = window.document.getElementById(targetCell);
|
||||
const gutter = codeCell.querySelector('.code-annotation-gutter');
|
||||
gutter.appendChild(gutterDiv);
|
||||
}
|
||||
gutterDiv.style.top = top - 2 + "px";
|
||||
gutterDiv.style.height = height + 4 + "px";
|
||||
}
|
||||
selectedAnnoteEl = annoteEl;
|
||||
}
|
||||
};
|
||||
const unselectCodeLines = () => {
|
||||
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
|
||||
elementsIds.forEach((elId) => {
|
||||
const div = window.document.getElementById(elId);
|
||||
if (div) {
|
||||
div.remove();
|
||||
}
|
||||
});
|
||||
selectedAnnoteEl = undefined;
|
||||
};
|
||||
// Attach click handler to the DT
|
||||
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
|
||||
for (const annoteDlNode of annoteDls) {
|
||||
annoteDlNode.addEventListener('click', (event) => {
|
||||
const clickedEl = event.target;
|
||||
if (clickedEl !== selectedAnnoteEl) {
|
||||
unselectCodeLines();
|
||||
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
|
||||
if (activeEl) {
|
||||
activeEl.classList.remove('code-annotation-active');
|
||||
}
|
||||
selectCodeLines(clickedEl);
|
||||
clickedEl.classList.add('code-annotation-active');
|
||||
} else {
|
||||
// Unselect the line
|
||||
unselectCodeLines();
|
||||
clickedEl.classList.remove('code-annotation-active');
|
||||
}
|
||||
});
|
||||
}
|
||||
const findCites = (el) => {
|
||||
const parentEl = el.parentElement;
|
||||
if (parentEl) {
|
||||
const cites = parentEl.dataset.cites;
|
||||
if (cites) {
|
||||
return {
|
||||
el,
|
||||
cites: cites.split(' ')
|
||||
};
|
||||
} else {
|
||||
return findCites(el.parentElement)
|
||||
}
|
||||
} else {
|
||||
return undefined;
|
||||
}
|
||||
};
|
||||
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
|
||||
for (var i=0; i<bibliorefs.length; i++) {
|
||||
const ref = bibliorefs[i];
|
||||
const citeInfo = findCites(ref);
|
||||
if (citeInfo) {
|
||||
tippyHover(citeInfo.el, function() {
|
||||
var popup = window.document.createElement('div');
|
||||
citeInfo.cites.forEach(function(cite) {
|
||||
var citeDiv = window.document.createElement('div');
|
||||
citeDiv.classList.add('hanging-indent');
|
||||
citeDiv.classList.add('csl-entry');
|
||||
var biblioDiv = window.document.getElementById('ref-' + cite);
|
||||
if (biblioDiv) {
|
||||
citeDiv.innerHTML = biblioDiv.innerHTML;
|
||||
}
|
||||
popup.appendChild(citeDiv);
|
||||
});
|
||||
return popup.innerHTML;
|
||||
});
|
||||
}
|
||||
}
|
||||
});
|
||||
</script>
|
||||
</div> <!-- /content -->
|
||||
<footer class="footer">
|
||||
<div class="nav-footer">
|
||||
<div class="nav-footer-left">
|
||||
|
||||
</div>
|
||||
<div class="nav-footer-center">Made using <a href="https://quarto.org/">Quarto</a>, Copyright 2023, Andreas Gammelgaard Damsbo</div>
|
||||
<div class="nav-footer-right">
|
||||
|
||||
</div>
|
||||
</div>
|
||||
</footer>
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
21
health-data.qmd
Normal file
21
health-data.qmd
Normal file
@ -0,0 +1,21 @@
|
||||
---
|
||||
title: "Health Data"
|
||||
listing:
|
||||
contents:
|
||||
- "health_data/*.qmd"
|
||||
type: grid
|
||||
sort: "date desc"
|
||||
categories: numbered
|
||||
---
|
||||
|
||||
::: topbr
|
||||
```{=html}
|
||||
<p style = "font-size: 18px">During my work in clinical research I have aquired a special set of skills in working with data collection, data bases and data analysis. I am very much interested in sharing these skils and knowledge.</p>
|
||||
```
|
||||
```{=html}
|
||||
<p style = "font-size: 18px">I am primarily working with R and REDCap. I have published one R package to CRAN and am actively maintaining two other packages on GitHub (on is on its way to CRAN). I am also working on a handbook for clinical researchers on working with R and REDCap.</p>
|
||||
```
|
||||
```{=html}
|
||||
<p style = "font-size: 18px">I have work as a data science consultant on a few projects. Here I will also share a few of them as a portfolio. Please don't hesitate to [contact me](mailto:andreas@gdamsbo.dk) if you need help on a project.</p>
|
||||
```
|
||||
:::
|
||||
32
health_data/ancle.qmd
Normal file
32
health_data/ancle.qmd
Normal file
@ -0,0 +1,32 @@
|
||||
---
|
||||
title: "Project: Foot database"
|
||||
date: 2023-04-28
|
||||
description: Comprehensive data and data base migration to continue data collection.
|
||||
categories:
|
||||
- REDDCap
|
||||
- Project
|
||||
- R
|
||||
- Consultant
|
||||
---
|
||||
## Background
|
||||
|
||||
This project is the most comprehensive data base migration yet.
|
||||
|
||||
The clients wis, was for an old Microsoft Access data base to be migrated to REDCap, for continous use and data collection.
|
||||
|
||||
## Database
|
||||
|
||||
Here are a few characteristics:
|
||||
|
||||
- Around 3000 entries
|
||||
|
||||
- 5 collection instruments, 4 of them were to be used as repeatable instruments.
|
||||
|
||||
- 80 variables
|
||||
|
||||
## Coding
|
||||
|
||||
I have collected my scripts in a repository, which will be made public when I have finished the work.
|
||||
|
||||
## Extend of the work
|
||||
|
||||
Loading…
Reference in New Issue
Block a user