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stRoke/docs/news/index.html
AG Damsbo 1868311e33 updated NEWS.md
2023-01-26 09:24:20 +01:00

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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
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<img src="" class="logo" alt=""><h1>Changelog</h1>
<small>Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="23.1.8" id="stroke-2318">stRoke 23.1.8<a class="anchor" aria-label="anchor" href="#stroke-2318"></a></h2>
<div class="section level4">
<h4 id="functions-23-1-8">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-1-8"></a></h4>
<ul><li>write_ical() is an easy to use implementation of the package <code><a href="https://rdrr.io/r/base/library.html" class="external-link">library(calendar)</a></code> for easy conversion of spreadsheets to ical object. Export an .ics file using <code><a href="https://rdrr.io/pkg/calendar/man/ic_write.html" class="external-link">calendar::ic_write()</a></code>.</li>
</ul></div>
<div class="section level4">
<h4 id="notes-23-1-8">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-1-8"></a></h4>
<ul><li>This is the first update on CRAN.</li>
</ul></div>
<div class="section level4">
<h4 id="documentation-23-1-8">Documentation<a class="anchor" aria-label="anchor" href="#documentation-23-1-8"></a></h4>
<ul><li>Badges, lots of badges</li>
</ul></div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="23.1.7" id="stroke-2317">stRoke 23.1.7<a class="anchor" aria-label="anchor" href="#stroke-2317"></a></h2><p class="text-muted">CRAN release: 2023-01-24</p>
<div class="section level4">
<h4 id="notes-23-1-7">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-1-7"></a></h4>
<ul><li>This is the version first published on CRAN as of 24.jan.2023.</li>
<li>This is also the version first published to zenodo.org, and with corresponding <a href="https://doi.org/10.5281/zenodo.7572023" class="external-link">doi: 10.5281/zenodo.7572023</a>.</li>
</ul></div>
<div class="section level4">
<h4 id="functions-23-1-7">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-1-7"></a></h4>
<ul><li>redcap_read_tables() has been removed from the package for now. Looking to add it back later as a minimal data acquisition tool.</li>
</ul></div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="23.1.6" id="stroke-2316---failed-due-to-dependencies">stRoke 23.1.6 - failed due to dependencies<a class="anchor" aria-label="anchor" href="#stroke-2316---failed-due-to-dependencies"></a></h2>
<div class="section level4">
<h4 id="new-attempt-at-cran-submission-23-1-6">New attempt at CRAN submission<a class="anchor" aria-label="anchor" href="#new-attempt-at-cran-submission-23-1-6"></a></h4>
</div>
<div class="section level4">
<h4 id="functions-23-1-6">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-1-6"></a></h4>
<ul><li>win_prop() added to implement the suggested methods in <a href="https://doi.org/10.1161/STROKEAHA.121.037744" class="external-link">DOI: 10.1161/STROKEAHA.121.037744</a>, as an implementation of “Tournament Methods” also found in <code><a href="https://rdrr.io/r/base/library.html" class="external-link">library(genodds)</a></code>. The function is based on the spreadsheet provided by the authors. A print.win_Prop is also added for printing.</li>
</ul></div>
<div class="section level4">
<h4 id="notes-23-1-6">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-1-6"></a></h4>
<ul><li>23.1.5 failed on CRAN due to gt_plot(). This function has been dropped. Find it as as_ggplot() elsewhere.</li>
<li>agdamsbo/REDCapRITS added as “Additional_repositories”.</li>
<li>Included references listed as authors.</li>
</ul></div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="23.1.5" id="stroke-2315">stRoke 23.1.5<a class="anchor" aria-label="anchor" href="#stroke-2315"></a></h2>
<div class="section level4">
<h4 id="release-on-cran---failed-23-1-5">RELEASE ON CRAN - failed<a class="anchor" aria-label="anchor" href="#release-on-cran---failed-23-1-5"></a></h4>
</div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="0.23.1.4" id="stroke-02314">stRoke 0.23.1.4<a class="anchor" aria-label="anchor" href="#stroke-02314"></a></h2>
<div class="section level4">
<h4 id="functions-0-23-1-4">Functions:<a class="anchor" aria-label="anchor" href="#functions-0-23-1-4"></a></h4>
<ul><li>plot_olr() has been deprecated and removed.</li>
<li>ci_plot() functionality extended to include logistic model plotting.</li>
<li>age_calc() use vapply() instead of sapply()</li>
<li>gt_plot() function added to plot gt elements as ggplots. From <a href="https://github.com/MSKCC-Epi-Bio/bstfun" class="external-link">bstfun</a>. Not all done and satisfied with the layout with patchwork.</li>
</ul></div>
<div class="section level4">
<h4 id="documentation-0-23-1-4">Documentation<a class="anchor" aria-label="anchor" href="#documentation-0-23-1-4"></a></h4>
<ul><li>Trying to complete all flags from goodpractice and inteRgrate</li>
</ul></div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="0.23.1.3" id="stroke-02313">stRoke 0.23.1.3<a class="anchor" aria-label="anchor" href="#stroke-02313"></a></h2>
<div class="section level4">
<h4 id="functions-0-23-1-3">Functions:<a class="anchor" aria-label="anchor" href="#functions-0-23-1-3"></a></h4>
<ul><li>files_filter() added. Simple function to get file names in path with specified filter.</li>
<li>updated cpr_dob to give warnings if format is not recognised and return NAs.</li>
<li>ci_plot() updated to actually handle binary factors. Uses glm(), not lm().</li>
</ul></div>
<div class="section level4">
<h4 id="documentation-0-23-1-3">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-0-23-1-3"></a></h4>
<ul><li>test, test and tests to satisfy codecov and, of course, ensure higher quality</li>
<li>changes to comply with goodpractices::gp()</li>
</ul><p>…and probably some more.</p>
</div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="0.23.1.2" id="stroke-02312">stRoke 0.23.1.2<a class="anchor" aria-label="anchor" href="#stroke-02312"></a></h2>
<div class="section level4">
<h4 id="functions-0-23-1-2">Functions:<a class="anchor" aria-label="anchor" href="#functions-0-23-1-2"></a></h4>
<ul><li>cpr_dob() now includes <code>format=</code>.</li>
<li>Other minor updates.</li>
</ul></div>
<div class="section level4">
<h4 id="documentation-0-23-1-2">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-0-23-1-2"></a></h4>
<ul><li>Two new vignettes</li>
<li>Taking last steps in documenting before releasing on CRAN</li>
</ul></div>
<div class="section level4">
<h4 id="other-0-23-1-2">Other:<a class="anchor" aria-label="anchor" href="#other-0-23-1-2"></a></h4>
<ul><li>New hex logo</li>
</ul></div>
</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="0.23.1.1" id="stroke-02311">stRoke 0.23.1.1<a class="anchor" aria-label="anchor" href="#stroke-02311"></a></h2>
<div class="section level4">
<h4 id="functions-0-23-1-1">Functions:<a class="anchor" aria-label="anchor" href="#functions-0-23-1-1"></a></h4>
<ul><li>age_calc() now also outputs a numeric vector for units=“days”, and not a character vector as difftime() would.</li>
</ul></div>
<div class="section level4">
<h4 id="documentation-0-23-1-1">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-0-23-1-1"></a></h4>
<ul><li>Added a <code>NEWS.md</code> file to track changes to the package.</li>
<li>Added codecov</li>
<li>Added tests with the help of gpttools</li>
</ul></div>
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