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125 lines
4.0 KiB
R
125 lines
4.0 KiB
R
#' Calculate age in years, months, or days
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#'
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#' @param dob Date of birth
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#' @param enddate End date for age calculation (default is Sys.Date())
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#' @param units Units for age calculation (default is "years").
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#' Can be c("days", "months", "years")
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#' @param precise Option to calculate age precisely (default is TRUE)
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#' @return numeric vector length 1
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#' @export
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#'
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#' @examples
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#' trunc(age_calc(as.Date("1945-10-23"),as.Date("2018-09-30")))
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#'
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#' @references
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#' Becker, J.P. (2020). eeptools: An R Package for Teaching and Learning
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#' Ecology and Evolutionary Biology. Journal of Statistical Software,
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#' 93(2), 1-27.
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#' @source \doi{10.18637/jss.v093.i02}
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#'
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#' @keywords date time age
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age_calc<-function (dob, enddate = Sys.Date(), units = "years", precise = TRUE)
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{
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if (!inherits(dob, "Date") | !inherits(enddate, "Date")) {
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stop("Both dob and enddate must be Date class objects")
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}
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if (length(dob)==1 && enddate < dob) {
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stop("End date must be a date after date of birth")
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}
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if (length(dob)>1 && any(enddate < dob)) {
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stop("End date must be a date after date of birth")
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}
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start <- as.POSIXlt(dob)
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end <- as.POSIXlt(enddate)
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if (precise) {
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start_is_leap <- ifelse(start$year%%400 == 0, TRUE,
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ifelse(start$year%%100 == 0,
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FALSE,
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ifelse(start$year%%4 == 0, TRUE, FALSE)))
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end_is_leap <- ifelse(end$year%%400 == 0, TRUE,
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ifelse(end$year%%100 == 0,
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FALSE,
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ifelse(end$year%%4 == 0, TRUE, FALSE)))
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}
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if (units == "days") {
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result <- as.numeric(difftime(end, start, units = "days"))
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}
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else if (units == "months") {
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months <- vapply(
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mapply(
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seq,
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as.POSIXct(start),
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as.POSIXct(end),
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by = "months",
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SIMPLIFY = FALSE
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),
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length,
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numeric(1)
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) - 1
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if (precise) {
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month_length_end <- ifelse(end$mon == 1 & end_is_leap,
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29, ifelse(end$mon == 1, 28,
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ifelse(end$mon %in% c(3, 5, 8, 10),
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30, 31)))
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month_length_prior <- ifelse((end$mon - 1) == 1 &
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start_is_leap, 29,
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ifelse((end$mon - 1) == 1, 28,
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ifelse((end$mon - 1) %in%
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c(3, 5, 8, 10), 30, 31)))
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month_frac <- ifelse(end$mday > start$mday,
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(end$mday - start$mday)/month_length_end,
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ifelse(end$mday < start$mday,
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(month_length_prior -
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start$mday)/month_length_prior +
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end$mday/month_length_end, 0))
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result <- months + month_frac
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}
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else {
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result <- months
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}
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}
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else if (units == "years") {
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years <- vapply(
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mapply(
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seq,
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as.POSIXct(start),
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as.POSIXct(end),
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by = "years",
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SIMPLIFY = FALSE
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),
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length,
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numeric(1)
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) - 1
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if (precise) {
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start_length <- ifelse(start_is_leap, 366, 365)
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end_length <- ifelse(end_is_leap, 366, 365)
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start_day <- ifelse(start_is_leap & start$yday >=
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60, start$yday - 1, start$yday)
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end_day <- ifelse(end_is_leap & end$yday >= 60, end$yday -
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1, end$yday)
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year_frac <- ifelse(start_day <
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end_day, (end_day - start_day)/end_length,
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ifelse(start_day > end_day,
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(start_length - start_day)/start_length +
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end_day/end_length, 0))
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result <- years + year_frac
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}
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else {
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result <- years
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}
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}
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else {
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stop("Unrecognized units. Please choose years, months, or days.")
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}
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result
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}
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