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<img src="../logo.png" class="logo" alt=""><h1>Toolbox</h1>
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<h4 data-toc-skip class="date">2024-02-09</h4>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/toolbox.Rmd" class="external-link"><code>vignettes/toolbox.Rmd</code></a></small>
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<div class="d-none name"><code>toolbox.Rmd</code></div>
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</div>
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<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://agdamsbo.github.io/stRoke/">stRoke</a></span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
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<h2 id="a-toolbox">A toolbox<a class="anchor" aria-label="anchor" href="#a-toolbox"></a>
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</h2>
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<p>My own toolbox in my small workshop is a mix of some old, worn, well
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proven tools and some newcomers. This package should be seen as
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something like that.</p>
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<p>I have tried to collect tools and functions from other packages that
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I use regularly in addition to functions that I have written myself to
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fill use cases, that I have not been able to find solutions to
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elsewhere.</p>
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<p>In documenting and testing the package, I have used <a href="https://platform.openai.com/overview" class="external-link">OpenAI’s</a> chatgpt with <a href="https://jameshwade.github.io/gpttools/" class="external-link">gpttools</a>. The chatgpt
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is an interesting tool, that is in no way perfect, but it helps with
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tedious tasks. Both <code>gpttools</code> and <a href="https://michelnivard.github.io/gptstudio/" class="external-link"><code>gptstudio</code></a>
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are interesting implementations in R and RStudio.</p>
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<div class="section level3">
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<h3 id="cpr-intro">CPR manipulations<a class="anchor" aria-label="anchor" href="#cpr-intro"></a>
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</h3>
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<p>Note that, if handled, CPR numbers (social security numbers) should
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be handled with care as they a considered highly sensitive data.</p>
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<p>The CPR number is structured as <em>DDMMYY-XXXX</em>, with the 1st
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<em>X</em> designating decade of birth, the last <em>X</em> designate
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binary gender (not biological sex) dependent on even/uneven as
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female/male, and the last for digits are used in a modulus calculation
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to verify the validity of the CPR number. Foreigners and unidentified
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persons are given temporary CPR numbers including letters.</p>
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<p>More information can be found on <a href="https://cpr.dk" class="external-link">cpr.dk</a>.</p>
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<p>Note, that all CPR numbers used in examples are publicly known or
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non-organic.</p>
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<div class="section level4">
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<h4 id="age_calc">age_calc()<a class="anchor" aria-label="anchor" href="#age_calc"></a>
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</h4>
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<p>The age_calc() function was created as a learning exercise and
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functions similarly to <code><a href="https://lubridate.tidyverse.org/reference/time_length.html" class="external-link">lubridate::time_length()</a></code>.</p>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="op">(</span><span class="va">age</span> <span class="op"><-</span> <span class="fu"><a href="../reference/age_calc.html">age_calc</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/as.Date.html" class="external-link">as.Date</a></span><span class="op">(</span><span class="st">"1945-10-23"</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/as.Date.html" class="external-link">as.Date</a></span><span class="op">(</span><span class="st">"2018-09-30"</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span>
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<span><span class="co">#> [1] 72.93699</span></span>
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<span><span class="fu"><a href="https://rdrr.io/r/base/Round.html" class="external-link">trunc</a></span><span class="op">(</span><span class="va">age</span><span class="op">)</span></span>
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<span><span class="co">#> [1] 72</span></span></code></pre></div>
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</div>
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<div class="section level4">
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<h4 id="cpr_check">cpr_check()<a class="anchor" aria-label="anchor" href="#cpr_check"></a>
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</h4>
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<p>Checks validity of CPR numbers according to the <a href="https://cpr.dk/cpr-systemet/opbygning-af-cpr-nummeret" class="external-link">modulus 11
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rule</a>. Note that due to limitations in the possible available CPR
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numbers, this rule <a href="https://cpr.dk/cpr-systemet/personnumre-uden-kontrolciffer-modulus-11-kontrol" class="external-link">does
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not apply to all CPR numbers after 2007</a>.</p>
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="../reference/cpr_check.html">cpr_check</a></span><span class="op">(</span></span>
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<span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span>
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<span> <span class="st">"2310450637"</span>,</span>
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<span> <span class="st">"010190-2000"</span>,</span>
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<span> <span class="st">"010115-4000"</span>,</span>
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<span> <span class="st">"300450-1030"</span>,</span>
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<span> <span class="st">"010150-4021"</span>,</span>
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<span> <span class="st">"010150-4AA1"</span></span>
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<span> <span class="op">)</span></span>
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<span><span class="op">)</span></span>
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<span><span class="co">#> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule.</span></span>
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<span><span class="co">#> </span></span>
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<span><span class="co">#> See the vignette 'Toolbox'</span></span>
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<span><span class="co">#> Warning in matrix(as.numeric(unlist(strsplit(cpr_short, ""))), nrow = 10): NAs</span></span>
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<span><span class="co">#> introduced by coercion</span></span>
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<span><span class="co">#> [1] TRUE FALSE FALSE FALSE FALSE NA</span></span></code></pre></div>
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<p>Including CPR numbers with letters gives a warning and
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<code>NA</code>, as it can not be checked by the modulus 11 function.
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Should be used with care, see the message.</p>
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</div>
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<div class="section level4">
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<h4 id="cpr_dob">cpr_dob()<a class="anchor" aria-label="anchor" href="#cpr_dob"></a>
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</h4>
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<p>Extracts date of birth (DOB) from a CPR number. Accounts for the
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decade of birth. <a href="#cpr-intro">See earlier</a>.</p>
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<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="../reference/cpr_dob.html">cpr_dob</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span></span>
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<span> <span class="st">"2310450637"</span>,</span>
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<span> <span class="st">"010190-2000"</span>,</span>
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<span> <span class="st">"010115-4000"</span>,</span>
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<span> <span class="st">"300450-1030"</span>,</span>
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<span> <span class="st">"010150-4021"</span></span>
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<span><span class="op">)</span><span class="op">)</span></span>
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<span><span class="co">#> [1] "23-10-1945" "01-01-1990" "01-01-2015" "30-04-1950" "01-01-1950"</span></span></code></pre></div>
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</div>
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<div class="section level4">
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<h4 id="cpr_female">cpr_female()<a class="anchor" aria-label="anchor" href="#cpr_female"></a>
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</h4>
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<p>Gives logical vector of whether female gender from last digit of
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CPR.</p>
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<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/base/table.html" class="external-link">table</a></span><span class="op">(</span><span class="fu"><a href="../reference/cpr_female.html">cpr_female</a></span><span class="op">(</span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="../reference/cprs.html">cprs</a></span><span class="op">[</span>, <span class="fl">1</span><span class="op">]</span><span class="op">)</span><span class="op">)</span></span>
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<span><span class="co">#> </span></span>
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<span><span class="co">#> FALSE TRUE </span></span>
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<span><span class="co">#> 98 102</span></span></code></pre></div>
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</div>
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</div>
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<div class="section level3">
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<h3 id="plotting">Plotting<a class="anchor" aria-label="anchor" href="#plotting"></a>
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</h3>
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<div class="section level4">
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<h4 id="ci_plot">ci_plot()<a class="anchor" aria-label="anchor" href="#ci_plot"></a>
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</h4>
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<p>Plots odds ratios with 95 % confidence intervals. Performs binary
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logistic regression for outcome factors with two (2) levels and ordinal
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logistic regression for outcome factors with more than two levels. Mind
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relevant assumptions.</p>
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<p>Outputs ggplot element for further manipulation.</p>
|
||
<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
|
||
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">talos</span><span class="op">)</span></span>
|
||
<span><span class="va">talos</span><span class="op">[</span>, <span class="st">"mrs_1"</span><span class="op">]</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/factor.html" class="external-link">factor</a></span><span class="op">(</span><span class="va">talos</span><span class="op">[</span>, <span class="st">"mrs_1"</span><span class="op">]</span>, ordered <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
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||
<span><span class="fu"><a href="../reference/ci_plot.html">ci_plot</a></span><span class="op">(</span></span>
|
||
<span> ds <span class="op">=</span> <span class="va">talos</span>,</span>
|
||
<span> x <span class="op">=</span> <span class="st">"rtreat"</span>,</span>
|
||
<span> y <span class="op">=</span> <span class="st">"mrs_1"</span>,</span>
|
||
<span> vars <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>, <span class="st">"diabetes"</span><span class="op">)</span></span>
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||
<span><span class="op">)</span></span>
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||
<span><span class="co">#> Waiting for profiling to be done...</span></span></code></pre></div>
|
||
<p><img src="toolbox_files/figure-html/ci_plot-example-1.png" width="700"></p>
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||
</div>
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||
<div class="section level4">
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||
<h4 id="generic_stroke">generic_stroke()<a class="anchor" aria-label="anchor" href="#generic_stroke"></a>
|
||
</h4>
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||
<p>For learning purposes. Uses annonymized data from the <a href="https://doi.org/10.1161/STROKEAHA.117.020067" class="external-link">TALOS trial</a> to
|
||
output a Table 1 (with <code><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">gtsummary::tbl_summary()</a></code>), plotting
|
||
the so-called grotta-bars based on mRS scores (with
|
||
<code><a href="https://rdrr.io/pkg/rankinPlot/man/grottaBar.html" class="external-link">rankinPlot::grottaBar()</a></code>) and a ordinal logistic regression
|
||
model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a></code>).</p>
|
||
<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
|
||
<code class="sourceCode R"><span><span class="fu"><a href="../reference/generic_stroke.html">generic_stroke</a></span><span class="op">(</span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="../reference/talos.html">talos</a></span>,</span>
|
||
<span> <span class="st">"rtreat"</span>,</span>
|
||
<span> <span class="st">"mrs_6"</span>,</span>
|
||
<span> variables <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>, <span class="st">"diabetes"</span>, <span class="st">"civil"</span><span class="op">)</span><span class="op">)</span></span>
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||
<span><span class="co">#> Waiting for profiling to be done...</span></span>
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||
<span><span class="co">#> $`Table 1`</span></span>
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||
<span><span class="co">#> <div id="lypbdxnugv" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"></span></span>
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||
<span><span class="co">#> <style>#lypbdxnugv table {</span></span>
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||
<span><span class="co">#> font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';</span></span>
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||
<span><span class="co">#> -webkit-font-smoothing: antialiased;</span></span>
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||
<span><span class="co">#> -moz-osx-font-smoothing: grayscale;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv thead, #lypbdxnugv tbody, #lypbdxnugv tfoot, #lypbdxnugv tr, #lypbdxnugv td, #lypbdxnugv th {</span></span>
|
||
<span><span class="co">#> border-style: none;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv p {</span></span>
|
||
<span><span class="co">#> margin: 0;</span></span>
|
||
<span><span class="co">#> padding: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_table {</span></span>
|
||
<span><span class="co">#> display: table;</span></span>
|
||
<span><span class="co">#> border-collapse: collapse;</span></span>
|
||
<span><span class="co">#> line-height: normal;</span></span>
|
||
<span><span class="co">#> margin-left: auto;</span></span>
|
||
<span><span class="co">#> margin-right: auto;</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> font-size: 16px;</span></span>
|
||
<span><span class="co">#> font-weight: normal;</span></span>
|
||
<span><span class="co">#> font-style: normal;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> width: auto;</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> border-top-color: #A8A8A8;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 2px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #A8A8A8;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 2px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_caption {</span></span>
|
||
<span><span class="co">#> padding-top: 4px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 4px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_title {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> font-size: 125%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> padding-top: 4px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 4px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_subtitle {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> font-size: 85%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> padding-top: 3px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 5px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> border-top-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> border-top-width: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_heading {</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> text-align: center;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 1px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 1px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_bottom_border {</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_col_headings {</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 1px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 1px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_col_heading {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: normal;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 1px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 1px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> vertical-align: bottom;</span></span>
|
||
<span><span class="co">#> padding-top: 5px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 6px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> overflow-x: hidden;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_column_spanner_outer {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: normal;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> padding-top: 0;</span></span>
|
||
<span><span class="co">#> padding-bottom: 0;</span></span>
|
||
<span><span class="co">#> padding-left: 4px;</span></span>
|
||
<span><span class="co">#> padding-right: 4px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_column_spanner_outer:first-child {</span></span>
|
||
<span><span class="co">#> padding-left: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_column_spanner_outer:last-child {</span></span>
|
||
<span><span class="co">#> padding-right: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_column_spanner {</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> vertical-align: bottom;</span></span>
|
||
<span><span class="co">#> padding-top: 5px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 5px;</span></span>
|
||
<span><span class="co">#> overflow-x: hidden;</span></span>
|
||
<span><span class="co">#> display: inline-block;</span></span>
|
||
<span><span class="co">#> width: 100%;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_spanner_row {</span></span>
|
||
<span><span class="co">#> border-bottom-style: hidden;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_group_heading {</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 1px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 1px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> vertical-align: middle;</span></span>
|
||
<span><span class="co">#> text-align: left;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_empty_group_heading {</span></span>
|
||
<span><span class="co">#> padding: 0.5px;</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> vertical-align: middle;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_from_md > :first-child {</span></span>
|
||
<span><span class="co">#> margin-top: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_from_md > :last-child {</span></span>
|
||
<span><span class="co">#> margin-bottom: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_row {</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> margin: 10px;</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 1px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 1px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 1px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> vertical-align: middle;</span></span>
|
||
<span><span class="co">#> overflow-x: hidden;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_stub {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> border-right-style: solid;</span></span>
|
||
<span><span class="co">#> border-right-width: 2px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_stub_row_group {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> font-weight: initial;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> border-right-style: solid;</span></span>
|
||
<span><span class="co">#> border-right-width: 2px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> vertical-align: top;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_row_group_first td {</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_row_group_first th {</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_summary_row {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_first_summary_row {</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_first_summary_row.thick {</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_last_summary_row {</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_grand_summary_row {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> text-transform: inherit;</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_first_grand_summary_row {</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> border-top-style: double;</span></span>
|
||
<span><span class="co">#> border-top-width: 6px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_last_grand_summary_row_top {</span></span>
|
||
<span><span class="co">#> padding-top: 8px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 8px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> border-bottom-style: double;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 6px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_striped {</span></span>
|
||
<span><span class="co">#> background-color: rgba(128, 128, 128, 0.05);</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_table_body {</span></span>
|
||
<span><span class="co">#> border-top-style: solid;</span></span>
|
||
<span><span class="co">#> border-top-width: 2px;</span></span>
|
||
<span><span class="co">#> border-top-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-bottom-style: solid;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_footnotes {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> border-bottom-style: none;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 2px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 2px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_footnote {</span></span>
|
||
<span><span class="co">#> margin: 0px;</span></span>
|
||
<span><span class="co">#> font-size: 90%;</span></span>
|
||
<span><span class="co">#> padding-top: 4px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 4px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_sourcenotes {</span></span>
|
||
<span><span class="co">#> color: #333333;</span></span>
|
||
<span><span class="co">#> background-color: #FFFFFF;</span></span>
|
||
<span><span class="co">#> border-bottom-style: none;</span></span>
|
||
<span><span class="co">#> border-bottom-width: 2px;</span></span>
|
||
<span><span class="co">#> border-bottom-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-left-style: none;</span></span>
|
||
<span><span class="co">#> border-left-width: 2px;</span></span>
|
||
<span><span class="co">#> border-left-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> border-right-style: none;</span></span>
|
||
<span><span class="co">#> border-right-width: 2px;</span></span>
|
||
<span><span class="co">#> border-right-color: #D3D3D3;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_sourcenote {</span></span>
|
||
<span><span class="co">#> font-size: 90%;</span></span>
|
||
<span><span class="co">#> padding-top: 4px;</span></span>
|
||
<span><span class="co">#> padding-bottom: 4px;</span></span>
|
||
<span><span class="co">#> padding-left: 5px;</span></span>
|
||
<span><span class="co">#> padding-right: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_left {</span></span>
|
||
<span><span class="co">#> text-align: left;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_center {</span></span>
|
||
<span><span class="co">#> text-align: center;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_right {</span></span>
|
||
<span><span class="co">#> text-align: right;</span></span>
|
||
<span><span class="co">#> font-variant-numeric: tabular-nums;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_font_normal {</span></span>
|
||
<span><span class="co">#> font-weight: normal;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_font_bold {</span></span>
|
||
<span><span class="co">#> font-weight: bold;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_font_italic {</span></span>
|
||
<span><span class="co">#> font-style: italic;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_super {</span></span>
|
||
<span><span class="co">#> font-size: 65%;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_footnote_marks {</span></span>
|
||
<span><span class="co">#> font-size: 75%;</span></span>
|
||
<span><span class="co">#> vertical-align: 0.4em;</span></span>
|
||
<span><span class="co">#> position: initial;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_asterisk {</span></span>
|
||
<span><span class="co">#> font-size: 100%;</span></span>
|
||
<span><span class="co">#> vertical-align: 0;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_indent_1 {</span></span>
|
||
<span><span class="co">#> text-indent: 5px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_indent_2 {</span></span>
|
||
<span><span class="co">#> text-indent: 10px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_indent_3 {</span></span>
|
||
<span><span class="co">#> text-indent: 15px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_indent_4 {</span></span>
|
||
<span><span class="co">#> text-indent: 20px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> #lypbdxnugv .gt_indent_5 {</span></span>
|
||
<span><span class="co">#> text-indent: 25px;</span></span>
|
||
<span><span class="co">#> }</span></span>
|
||
<span><span class="co">#> </style></span></span>
|
||
<span><span class="co">#> <table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false"></span></span>
|
||
<span><span class="co">#> <thead></span></span>
|
||
<span><span class="co">#> <tr class="gt_col_headings"></span></span>
|
||
<span><span class="co">#> <th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="&lt;strong&gt;Characteristic&lt;/strong&gt;"><strong>Characteristic</strong></th></span></span>
|
||
<span><span class="co">#> <th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="&lt;strong&gt;Overall&lt;/strong&gt;, N = 200&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;"><strong>Overall</strong>, N = 200<span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;"><sup>1</sup></span></th></span></span>
|
||
<span><span class="co">#> <th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="&lt;strong&gt;Active&lt;/strong&gt;, N = 79&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;"><strong>Active</strong>, N = 79<span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;"><sup>1</sup></span></th></span></span>
|
||
<span><span class="co">#> <th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="&lt;strong&gt;Placebo&lt;/strong&gt;, N = 121&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;"><strong>Placebo</strong>, N = 121<span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;"><sup>1</sup></span></th></span></span>
|
||
<span><span class="co">#> </tr></span></span>
|
||
<span><span class="co">#> </thead></span></span>
|
||
<span><span class="co">#> <tbody class="gt_table_body"></span></span>
|
||
<span><span class="co">#> <tr><td headers="label" class="gt_row gt_left">hypertension</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_0" class="gt_row gt_center">101 (51%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_1" class="gt_row gt_center">38 (48%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_2" class="gt_row gt_center">63 (52%)</td></tr></span></span>
|
||
<span><span class="co">#> <tr><td headers="label" class="gt_row gt_left">diabetes</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_0" class="gt_row gt_center">23 (12%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_1" class="gt_row gt_center">9 (11%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_2" class="gt_row gt_center">14 (12%)</td></tr></span></span>
|
||
<span><span class="co">#> <tr><td headers="label" class="gt_row gt_left">civil</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_0" class="gt_row gt_center"><br /></td></span></span>
|
||
<span><span class="co">#> <td headers="stat_1" class="gt_row gt_center"><br /></td></span></span>
|
||
<span><span class="co">#> <td headers="stat_2" class="gt_row gt_center"><br /></td></tr></span></span>
|
||
<span><span class="co">#> <tr><td headers="label" class="gt_row gt_left"> alone</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_0" class="gt_row gt_center">59 (30%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_1" class="gt_row gt_center">22 (28%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_2" class="gt_row gt_center">37 (31%)</td></tr></span></span>
|
||
<span><span class="co">#> <tr><td headers="label" class="gt_row gt_left"> partner</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_0" class="gt_row gt_center">141 (71%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_1" class="gt_row gt_center">57 (72%)</td></span></span>
|
||
<span><span class="co">#> <td headers="stat_2" class="gt_row gt_center">84 (69%)</td></tr></span></span>
|
||
<span><span class="co">#> </tbody></span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> <tfoot class="gt_footnotes"></span></span>
|
||
<span><span class="co">#> <tr></span></span>
|
||
<span><span class="co">#> <td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;"><sup>1</sup></span> n (%)</td></span></span>
|
||
<span><span class="co">#> </tr></span></span>
|
||
<span><span class="co">#> </tfoot></span></span>
|
||
<span><span class="co">#> </table></span></span>
|
||
<span><span class="co">#> </div></span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> $`Figure 1`</span></span></code></pre></div>
|
||
<p><img src="toolbox_files/figure-html/generic_stroke-example-1.png" width="700"></p>
|
||
<pre><code><span><span class="co">#> </span></span>
|
||
<span><span class="co">#> $`Figure 2`</span></span></code></pre>
|
||
<p><img src="toolbox_files/figure-html/generic_stroke-example-2.png" width="700"></p>
|
||
</div>
|
||
<div class="section level4">
|
||
<h4 id="index_plot">index_plot()<a class="anchor" aria-label="anchor" href="#index_plot"></a>
|
||
</h4>
|
||
<p>Used for plotting scores from a multi dimensional patient test.</p>
|
||
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
|
||
<code class="sourceCode R"><span><span class="fu"><a href="../reference/index_plot.html">index_plot</a></span><span class="op">(</span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="../reference/score.html">score</a></span><span class="op">[</span><span class="va">score</span><span class="op">$</span><span class="va">event</span> <span class="op">==</span> <span class="st">"A"</span>, <span class="op">]</span><span class="op">)</span></span></code></pre></div>
|
||
<p><img src="toolbox_files/figure-html/index_plot-example-1.png" width="700"></p>
|
||
</div>
|
||
<div class="section level4">
|
||
<h4 id="win_prob">win_prob()<a class="anchor" aria-label="anchor" href="#win_prob"></a>
|
||
</h4>
|
||
<p>The <code><a href="../reference/win_prob.html">win_prob()</a></code> is an implementation of the Tournament
|
||
Method for calculating the probability of winning as suggested by <a href="https://doi.org/10.1161/STROKEAHA.121.037744" class="external-link">Zou et al 2022</a>.
|
||
The authors has included a spreadsheet as supplementary materials. This
|
||
function aims to mimic that functionality. The function also includes a
|
||
<code><a href="https://rdrr.io/r/base/print.html" class="external-link">print()</a></code> extension for nice printing.</p>
|
||
<div class="sourceCode" id="cb10"><pre class="downlit sourceCode r">
|
||
<code class="sourceCode R"><span><span class="fu"><a href="../reference/win_prob.html">win_prob</a></span><span class="op">(</span></span>
|
||
<span> data <span class="op">=</span> <span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="../reference/talos.html">talos</a></span>,</span>
|
||
<span> response <span class="op">=</span> <span class="st">"mrs_6"</span>,</span>
|
||
<span> group <span class="op">=</span> <span class="st">"rtreat"</span>,</span>
|
||
<span> sample.size <span class="op">=</span> <span class="cn">TRUE</span>,</span>
|
||
<span> print.tables <span class="op">=</span> <span class="cn">TRUE</span></span>
|
||
<span><span class="op">)</span></span>
|
||
<span><span class="co">#> Zou et al's winP (doi: 10.1161/STROKEAHA.121.037744) </span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> Probability of a random observation in Placebo group </span></span>
|
||
<span><span class="co">#> will have a higher response score than a random</span></span>
|
||
<span><span class="co">#> observation in Active group:</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> winP: 0.400 (0.612, 0.372) p=0.0125</span></span>
|
||
<span><span class="co">#> --------------------------------------------</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> The numbers needed to treat (NNT) are: -9</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> --------------------------------------------</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> With Active/Placebo ratio = 1 and beta = 0.2</span></span>
|
||
<span><span class="co">#> the sample size needed is: 238</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> --------------------------------------------</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> Results for the Active group:</span></span>
|
||
<span><span class="co">#> |mrs_6 | Freq| prop| overall_rank| rank| win_frac|</span></span>
|
||
<span><span class="co">#> |:-----|----:|-----:|------------:|----:|--------:|</span></span>
|
||
<span><span class="co">#> |0 | 14| 0.177| 175.0| 72.5| 0.847|</span></span>
|
||
<span><span class="co">#> |1 | 29| 0.367| 113.5| 51.0| 0.517|</span></span>
|
||
<span><span class="co">#> |2 | 22| 0.278| 49.0| 25.5| 0.194|</span></span>
|
||
<span><span class="co">#> |3 | 9| 0.114| 15.0| 10.0| 0.041|</span></span>
|
||
<span><span class="co">#> |4 | 3| 0.038| 7.0| 4.0| 0.025|</span></span>
|
||
<span><span class="co">#> |6 | 2| 0.025| 2.5| 1.5| 0.008|</span></span>
|
||
<span><span class="co">#> </span></span>
|
||
<span><span class="co">#> Results for the Placebo group:</span></span>
|
||
<span><span class="co">#> |mrs_6 | Freq| prop| overall_rank| rank| win_frac|</span></span>
|
||
<span><span class="co">#> |:-----|----:|-----:|------------:|-----:|--------:|</span></span>
|
||
<span><span class="co">#> |0 | 37| 0.306| 175.0| 103.0| 0.911|</span></span>
|
||
<span><span class="co">#> |1 | 43| 0.355| 113.5| 63.0| 0.639|</span></span>
|
||
<span><span class="co">#> |2 | 35| 0.289| 49.0| 24.0| 0.316|</span></span>
|
||
<span><span class="co">#> |3 | 2| 0.017| 15.0| 5.5| 0.120|</span></span>
|
||
<span><span class="co">#> |4 | 2| 0.017| 7.0| 3.5| 0.044|</span></span>
|
||
<span><span class="co">#> |6 | 2| 0.017| 2.5| 1.5| 0.013|</span></span></code></pre></div>
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