ds2dd step 4 in vignette

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 23.1.7
+Version: 23.1.8
-Date: 2023-01-23 11:49:57 UTC
+Date: 2023-01-27 08:40:38 UTC
-SHA: ef2dabc8f563a1b442d67997bd21500f13bf3003
+SHA: 32be68177d94e20b66c8f0915aa195c0c2c7eda5

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: stRoke
 Title: Clinical Stroke Research
-Version: 23.1.8
+Version: 23.4.1
 Authors@R: 
     person("Andreas Gammelgaard", "Damsbo", , "agdamsbo@clin.au.dk", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-7559-1154"))
@@ -30,6 +30,7 @@ Imports:
     calendar,
     dplyr,
     ggplot2,
+    grDevices,
     gtsummary,
     lubridate,
     MASS,

NAMESPACE

@@ -2,9 +2,11 @@
 
 export(age_calc)
 export(ci_plot)
+export(contrast_text)
 export(cpr_check)
 export(cpr_dob)
 export(cpr_female)
+export(ds2dd)
 export(files_filter)
 export(generic_stroke)
 export(index_plot)
@@ -21,6 +23,7 @@ importFrom(calendar,ic_write)
 importFrom(dplyr,if_else)
 importFrom(dplyr,mutate)
 importFrom(dplyr,select)
+importFrom(grDevices,col2rgb)
 importFrom(gtsummary,add_overall)
 importFrom(gtsummary,tbl_summary)
 importFrom(lubridate,dminutes)

NEWS.md

@@ -1,8 +1,21 @@
+# stRoke 23.4.1
+
+### Functions:
+
+* NEW: ds2dd() creates a REDCap data dictionary based on a data set for easy upload. A new vignette will be provided for example use. A separate vignette has been added.
+
+### Notes:
+
+* With newer additions to the package, these functions clearly has their potential use also outside stroke research.
+* A new vector with REDCap metadata headers has been added. Can be called with data(metadata_names).
+
+
 # stRoke 23.1.8
 
 ### Functions:
 
 * write_ical() is an easy to use implementation of the package `library(calendar)` for easy conversion of spreadsheets to ical object. Export an .ics file using `calendar::ic_write()`. 
+* contrast_text() calculates the best contrast text color for a given background color. For use in graphics.
 
 ### Notes:
 

R/contrast_text.R

@@ -0,0 +1,49 @@
+
+
+#' @title Contrast Text Color
+#' @description Calculates the best contrast text color for a given background color.
+#' @param background A hex/named color value that represents the background.
+#' @param light_text A hex/named color value that represents the light text color.
+#' @param dark_text A hex/named color value that represents the dark text color.
+#' @param threshold A numeric value between 0 and 1 that is used to determine 
+#' the luminance threshold of the background color for text color.
+#' @param method A character string that specifies the method for calculating 
+#' the luminance. Three different methods are available: 
+#' c("relative","perceived","perceived_2")
+#' @details
+#' This function aids in deciding the font color to print on a given background.
+#' The function is based on the example provided by teppo: 
+#' https://stackoverflow.com/a/66669838/21019325.
+#' The different methods provided are based on the methods outlined in the 
+#' StackOverflow thread: https://stackoverflow.com/questions/596216/formula-to-determine-perceived-brightness-of-rgb-color
+#' @return A character string that contains the best contrast text color.
+#' @examples
+#' contrast_text(c("#F2F2F2", "blue"))
+#' 
+#' contrast_text(c("#F2F2F2", "blue"), method="relative")
+#' @export
+#' 
+#' @importFrom grDevices col2rgb
+#'
+contrast_text <- function(background,
+                            light_text = 'white',
+                            dark_text = 'black',
+                            threshold = 0.5,
+                            method = "perceived_2") {
+  if (method == "relative") {
+    luminance <- c(c(.2126, .7152, .0722) %*% grDevices::col2rgb(background) / 255)
+  } else if (method == "perceived") {
+    luminance <- c(c(.299, .587, .114) %*% grDevices::col2rgb(background) / 255)
+  } else if (method == "perceived_2") {
+    luminance <- c(sqrt(colSums((
+      c(.299, .587, .114) * grDevices::col2rgb(background)
+    ) ^ 2)) / 255)
+  }
+  
+  ifelse(
+    luminance < threshold,
+    light_text,
+    dark_text
+  )
+}
+

R/ds2dd.R

@@ -0,0 +1,80 @@
+utils::globalVariables(c("metadata_names"))
+#' Data set to data dictionary function
+#'
+#' @param ds data set
+#' @param record.id name or column number of id variable, moved to first row of 
+#' data dictionary, character of integer. Default is "record_id".
+#' @param form.name vector of form names, character string, length 1 or length
+#' equal to number of variables. Default is "basis".
+#' @param field.type vector of field types, character string, length 1 or length
+#' equal to number of variables. Default is "text.
+#' @param field.label vector of form names, character string, length 1 or length
+#' equal to number of variables. Default is NULL and is then identical to field
+#' names.
+#' @param include.column.names Flag to give detailed output including new
+#' column names for original data set for upload.
+#'
+#' @return data.frame or list of data.frame and vector
+#' @export
+#'
+#' @examples
+#' talos$id <- seq_len(nrow(talos))
+#' ds2dd(talos, record.id="id",include.column.names=FALSE)
+
+ds2dd <-
+  function(ds,
+           record.id = "record_id",
+           form.name = "basis",
+           field.type = "text",
+           field.label = NULL,
+           include.column.names = FALSE) {
+    dd <- data.frame(matrix(ncol = length(metadata_names), nrow = ncol(ds)))
+    colnames(dd) <- metadata_names
+    
+    if (is.character(record.id) & !record.id %in% colnames(ds)) {
+      stop("Provided record.id is not a variable name in provided data set.")
+    }
+    
+    # renaming to lower case and substitute spaces with underscore
+    field.name <- gsub(" ", "_", tolower(colnames(ds)))
+    
+    # handles both character and integer
+    colsel <-
+      colnames(ds) == colnames(ds[record.id])
+    
+    if (summary(colsel)[3] != 1) {
+      stop("Provided record.id has to be or refer to a uniquely named column.")
+    }
+    
+    dd[, "field_name"] <-
+      c(field.name[colsel], field.name[!colsel])
+    
+    if (length(form.name) > 1 & length(form.name) != ncol(ds)) {
+      stop(
+        "Provided form.name should be of length 1 (value is reused) or equal 
+        length as number of variables in data set."
+      )
+    }
+    dd[, "form_name"] <- form.name
+    
+    if (length(field.type) > 1 & length(field.type) != ncol(ds)) {
+      stop(
+        "Provided field.type should be of length 1 (value is reused) or equal 
+        length as number of variables in data set."
+      )
+    }
+    
+    dd[, "field_type"] <- field.type
+    
+    if (is.null(field.label)) {
+      dd[, "field_label"] <- dd[, "field_name"]
+    } else
+      dd[, "field_label"] <- field.label
+    
+    if (include.column.names){
+      list("DataDictionary"=dd,"Column names"=field.name)
+    } else dd
+  }
+
+
+

R/metadata.R

@@ -0,0 +1,11 @@
+#' Vector of REDCap metadata headers
+#'
+#'
+#' @format Vector of length 18 with REDCap metadata headers:
+#' \describe{
+#'   \item{metadata_names}{characterstrings}
+#' }
+#' @seealso \url{https://www.project-redcap.org/}
+#' @usage data(metadata_names)
+"metadata_names"
+

docs/404.html

@@ -24,7 +24,7 @@
     
     <a class="navbar-brand me-2" href="index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,6 +39,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/articles/Toolbox.html

@@ -26,7 +26,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,6 +41,7 @@
 <li class="active nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -73,6 +74,7 @@
   <main id="main" class="col-md-9"><div class="page-header">
       <img src="" class="logo" alt=""><h1>Toolbox</h1>
             
+            <h4 data-toc-skip class="date">2023-04-12</h4>
       
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/toolbox.Rmd" class="external-link"><code>vignettes/toolbox.Rmd</code></a></small>
       <div class="d-none name"><code>toolbox.Rmd</code></div>
@@ -214,12 +216,12 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span>               variables <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>, <span class="st">"diabetes"</span>, <span class="st">"civil"</span><span class="op">)</span><span class="op">)</span></span>
 <span><span class="co">#&gt; Waiting for profiling to be done...</span></span>
 <span><span class="co">#&gt; $`Table 1`</span></span>
-<span><span class="co">#&gt; &lt;div id="znstbxiwsz" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span></span>
+<span><span class="co">#&gt; &lt;div id="zobrddqsqw" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span></span>
 <span><span class="co">#&gt;   &lt;style&gt;html {</span></span>
 <span><span class="co">#&gt;   font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_table {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_table {</span></span>
 <span><span class="co">#&gt;   display: table;</span></span>
 <span><span class="co">#&gt;   border-collapse: collapse;</span></span>
 <span><span class="co">#&gt;   margin-left: auto;</span></span>
@@ -244,7 +246,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-left-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_heading {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_heading {</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-align: center;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #FFFFFF;</span></span>
@@ -256,12 +258,12 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_caption {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_caption {</span></span>
 <span><span class="co">#&gt;   padding-top: 4px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 4px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_title {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_title {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   font-size: 125%;</span></span>
 <span><span class="co">#&gt;   font-weight: initial;</span></span>
@@ -273,7 +275,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-width: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_subtitle {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_subtitle {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   font-size: 85%;</span></span>
 <span><span class="co">#&gt;   font-weight: initial;</span></span>
@@ -285,13 +287,13 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-top-width: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_bottom_border {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_bottom_border {</span></span>
 <span><span class="co">#&gt;   border-bottom-style: solid;</span></span>
 <span><span class="co">#&gt;   border-bottom-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_col_headings {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_col_headings {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
@@ -306,7 +308,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_col_heading {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_col_heading {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -326,7 +328,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   overflow-x: hidden;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_column_spanner_outer {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_column_spanner_outer {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -338,15 +340,15 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 4px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_column_spanner_outer:first-child {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_column_spanner_outer:first-child {</span></span>
 <span><span class="co">#&gt;   padding-left: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_column_spanner_outer:last-child {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_column_spanner_outer:last-child {</span></span>
 <span><span class="co">#&gt;   padding-right: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_column_spanner {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_column_spanner {</span></span>
 <span><span class="co">#&gt;   border-bottom-style: solid;</span></span>
 <span><span class="co">#&gt;   border-bottom-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
@@ -358,7 +360,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   width: 100%;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_group_heading {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_group_heading {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -384,7 +386,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   text-align: left;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_empty_group_heading {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_empty_group_heading {</span></span>
 <span><span class="co">#&gt;   padding: 0.5px;</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
@@ -399,15 +401,15 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   vertical-align: middle;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_from_md &gt; :first-child {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_from_md &gt; :first-child {</span></span>
 <span><span class="co">#&gt;   margin-top: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_from_md &gt; :last-child {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_from_md &gt; :last-child {</span></span>
 <span><span class="co">#&gt;   margin-bottom: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -426,7 +428,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   overflow-x: hidden;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_stub {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_stub {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -439,7 +441,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_stub_row_group {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_stub_row_group {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -453,11 +455,11 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   vertical-align: top;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_row_group_first td {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_row_group_first td {</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_summary_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_summary_row {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-transform: inherit;</span></span>
@@ -467,16 +469,16 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_first_summary_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_first_summary_row {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_first_summary_row.thick {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_first_summary_row.thick {</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_last_summary_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_last_summary_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -486,7 +488,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_grand_summary_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_grand_summary_row {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-transform: inherit;</span></span>
@@ -496,7 +498,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_first_grand_summary_row {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_first_grand_summary_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -506,11 +508,11 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_striped {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_striped {</span></span>
 <span><span class="co">#&gt;   background-color: rgba(128, 128, 128, 0.05);</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_table_body {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_table_body {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
@@ -519,7 +521,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_footnotes {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_footnotes {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   border-bottom-style: none;</span></span>
@@ -533,7 +535,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_footnote {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_footnote {</span></span>
 <span><span class="co">#&gt;   margin: 0px;</span></span>
 <span><span class="co">#&gt;   font-size: 90%;</span></span>
 <span><span class="co">#&gt;   padding-left: 4px;</span></span>
@@ -542,7 +544,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_sourcenotes {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_sourcenotes {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   border-bottom-style: none;</span></span>
@@ -556,7 +558,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_sourcenote {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_sourcenote {</span></span>
 <span><span class="co">#&gt;   font-size: 90%;</span></span>
 <span><span class="co">#&gt;   padding-top: 4px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 4px;</span></span>
@@ -564,64 +566,64 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_left {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_left {</span></span>
 <span><span class="co">#&gt;   text-align: left;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_center {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_center {</span></span>
 <span><span class="co">#&gt;   text-align: center;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_right {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_right {</span></span>
 <span><span class="co">#&gt;   text-align: right;</span></span>
 <span><span class="co">#&gt;   font-variant-numeric: tabular-nums;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_font_normal {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_font_normal {</span></span>
 <span><span class="co">#&gt;   font-weight: normal;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_font_bold {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_font_bold {</span></span>
 <span><span class="co">#&gt;   font-weight: bold;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_font_italic {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_font_italic {</span></span>
 <span><span class="co">#&gt;   font-style: italic;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_super {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_super {</span></span>
 <span><span class="co">#&gt;   font-size: 65%;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_footnote_marks {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_footnote_marks {</span></span>
 <span><span class="co">#&gt;   font-style: italic;</span></span>
 <span><span class="co">#&gt;   font-weight: normal;</span></span>
 <span><span class="co">#&gt;   font-size: 75%;</span></span>
 <span><span class="co">#&gt;   vertical-align: 0.4em;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_asterisk {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_asterisk {</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
 <span><span class="co">#&gt;   vertical-align: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_indent_1 {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_indent_1 {</span></span>
 <span><span class="co">#&gt;   text-indent: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_indent_2 {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_indent_2 {</span></span>
 <span><span class="co">#&gt;   text-indent: 10px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_indent_3 {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_indent_3 {</span></span>
 <span><span class="co">#&gt;   text-indent: 15px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_indent_4 {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_indent_4 {</span></span>
 <span><span class="co">#&gt;   text-indent: 20px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #znstbxiwsz .gt_indent_5 {</span></span>
+<span><span class="co">#&gt; #zobrddqsqw .gt_indent_5 {</span></span>
 <span><span class="co">#&gt;   text-indent: 25px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; &lt;/style&gt;</span></span>

docs/articles/ds2dd.html

@@ -0,0 +1,185 @@
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+<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
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+
+
+
+
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+      <img src="" class="logo" alt=""><h1>ds2dd</h1>
+            
+            <h4 data-toc-skip class="date">2023-04-12</h4>
+      
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/ds2dd.Rmd" class="external-link"><code>vignettes/ds2dd.Rmd</code></a></small>
+      <div class="d-none name"><code>ds2dd.Rmd</code></div>
+    </div>
+
+    
+    
+<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://agdamsbo.github.io/stRoke/" class="external-link">stRoke</a></span><span class="op">)</span></span></code></pre></div>
+<div class="section level2">
+<h2 id="easy-data-set-to-data-base-workflow">Easy data set to data base workflow<a class="anchor" aria-label="anchor" href="#easy-data-set-to-data-base-workflow"></a>
+</h2>
+<p>This function can be used as a simple tool for creating at data base
+metadata file for REDCap (called a DataDictionary) based on a given data
+set file.</p>
+<div class="section level3">
+<h3 id="step-1---load-your-data-set">Step 1 - Load your data set<a class="anchor" aria-label="anchor" href="#step-1---load-your-data-set"></a>
+</h3>
+<p>Here we’ll use the sample TALOS dataset included with the
+package.</p>
+<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="st">"talos"</span><span class="op">)</span></span>
+<span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="va">talos</span></span>
+<span><span class="co"># As the data set lacks an ID column, one is added</span></span>
+<span><span class="va">ds</span><span class="op">$</span><span class="va">id</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/nrow.html" class="external-link">nrow</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
+</div>
+<div class="section level3">
+<h3 id="step-2---create-the-datadictionary">Step 2 - Create the DataDictionary<a class="anchor" aria-label="anchor" href="#step-2---create-the-datadictionary"></a>
+</h3>
+<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="va">datadictionary</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/ds2dd.html">ds2dd</a></span><span class="op">(</span><span class="va">ds</span>,record.id <span class="op">=</span> <span class="st">"id"</span>,include.column.names <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
+<p>Now additional specifications to the DataDictionary can be made
+manually, or it can be uploaded and modified manually in the graphical
+user interface on the web page.</p>
+<p>The function will transform column names to lower case and substitute
+spaces for underscores. The output is a list with the DataDictionary and
+a vector of new column names for the dataset to fit the meta data.</p>
+</div>
+<div class="section level3">
+<h3 id="step-3---meta-data-upload">Step 3 - Meta data upload<a class="anchor" aria-label="anchor" href="#step-3---meta-data-upload"></a>
+</h3>
+<p>Now the DataDictionary can be exported as a spreadsheet and uploaded
+or it can be uploaded using the <code>REDCapR</code> package (only
+projects with “Development” status).</p>
+<p>Use one of the two approaches below:</p>
+<div class="section level4">
+<h4 id="manual-upload">Manual upload<a class="anchor" aria-label="anchor" href="#manual-upload"></a>
+</h4>
+<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/write.table.html" class="external-link">write.csv</a></span><span class="op">(</span><span class="va">datadictionary</span><span class="op">$</span><span class="va">DataDictionary</span>,<span class="st">"datadictionary.csv"</span><span class="op">)</span></span></code></pre></div>
+</div>
+<div class="section level4">
+<h4 id="upload-with-redcapr">Upload with <code>REDCapR</code><a class="anchor" aria-label="anchor" href="#upload-with-redcapr"></a>
+</h4>
+<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="fu">REDCapR</span><span class="fu">::</span><span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_metadata_write.html" class="external-link">redcap_metadata_write</a></span><span class="op">(</span></span>
+<span>  <span class="va">datadictionary</span><span class="op">$</span><span class="va">DataDictionary</span>,</span>
+<span>  redcap_uri <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/keyring/man/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_URI"</span><span class="op">)</span>,</span>
+<span>  token <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/keyring/man/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_TOKEN"</span><span class="op">)</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+<p>In the <a href="https://agdamsbo.github.io/redcap-r-handbook/" class="external-link">“REDCap R
+Handbook”</a> more is written on interfacing with REDCap in R using the
+<code><a href="https://r-lib.github.io/keyring/index.html" class="external-link">library(keyring)</a></code>to store credentials in <a href="https://agdamsbo.github.io/redcap-r-handbook/access.html#sec-getting-access" class="external-link">chapter
+1.1</a>.</p>
+</div>
+</div>
+<div class="section level3">
+<h3 id="step-4---data-upload">Step 4 - Data upload<a class="anchor" aria-label="anchor" href="#step-4---data-upload"></a>
+</h3>
+<p>The same two options are available for data upload as meta data
+upload: manual og through <code>REDCapR</code>.</p>
+<p>Only the latter is shown here.</p>
+<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
+<code class="sourceCode R"><span><span class="co"># new column nams are applied</span></span>
+<span><span class="fu"><a href="https://rdrr.io/r/base/colnames.html" class="external-link">colnames</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="va">datadictionary</span><span class="op">$</span><span class="va">`Column names`</span></span>
+<span></span>
+<span><span class="fu">REDCapR</span><span class="fu">::</span><span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_write.html" class="external-link">redcap_write</a></span><span class="op">(</span></span>
+<span>  <span class="va">ds</span>,</span>
+<span>  redcap_uri <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/keyring/man/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_URI"</span><span class="op">)</span>,</span>
+<span>  token <span class="op">=</span> <span class="fu">keyring</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/keyring/man/key_get.html" class="external-link">key_get</a></span><span class="op">(</span><span class="st">"DB_TOKEN"</span><span class="op">)</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+</div>
+</div>
+  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+    </nav></aside>
+</div>
+
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p></p>
+<p>Developed by Andreas Gammelgaard Damsbo.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p></p>
+<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+</div>
+
+    </footer>
+</div>
+
+  
+
+  
+
+  </body>
+</html>

docs/articles/index.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -53,7 +54,9 @@
       <h3>All vignettes</h3>
       <p class="section-desc"></p>
 
-      <dl><dt><a href="toolbox.html">Toolbox</a></dt>
+      <dl><dt><a href="ds2dd.html">ds2dd</a></dt>
+        <dd>
+        </dd><dt><a href="toolbox.html">Toolbox</a></dt>
         <dd>
       </dd></dl></div>
   </main></div>

docs/authors.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/index.html

@@ -40,7 +40,7 @@
     
     <a class="navbar-brand me-2" href="index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -55,6 +55,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/news/index.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -50,11 +51,24 @@
       <small>Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
+    <div class="section level2">
+<h2 class="pkg-version" data-toc-text="23.4.1" id="stroke-2341">stRoke 23.4.1<a class="anchor" aria-label="anchor" href="#stroke-2341"></a></h2>
+<div class="section level4">
+<h4 id="functions-23-4-1">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-4-1"></a></h4>
+<ul><li>NEW: ds2dd() creates a REDCap data dictionary based on a data set for easy upload. A new vignette will be provided for example use. A separate vignette has been added.</li>
+</ul></div>
+<div class="section level4">
+<h4 id="notes-23-4-1">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-4-1"></a></h4>
+<ul><li>With newer additions to the package, these functions clearly has their potential use also outside stroke research.</li>
+<li>A new vector with REDCap metadata headers has been added. Can be called with data(metadata_names).</li>
+</ul></div>
+</div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="23.1.8" id="stroke-2318">stRoke 23.1.8<a class="anchor" aria-label="anchor" href="#stroke-2318"></a></h2>
 <div class="section level4">
 <h4 id="functions-23-1-8">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-1-8"></a></h4>
 <ul><li>write_ical() is an easy to use implementation of the package <code><a href="https://rdrr.io/r/base/library.html" class="external-link">library(calendar)</a></code> for easy conversion of spreadsheets to ical object. Export an .ics file using <code><a href="https://rdrr.io/pkg/calendar/man/ic_write.html" class="external-link">calendar::ic_write()</a></code>.</li>
+<li>contrast_text() calculates the best contrast text color for a given background color. For use in graphics.</li>
 </ul></div>
 <div class="section level4">
 <h4 id="notes-23-1-8">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-1-8"></a></h4>

docs/pkgdown.yml

@@ -2,6 +2,7 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
+  ds2dd: ds2dd.html
   toolbox: toolbox.html
-last_built: 2023-01-27T08:32Z
+last_built: 2023-04-12T12:24Z
 

docs/reference/age_calc.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/ci_plot.html

@@ -14,7 +14,7 @@ Title and axis labels can be added to the ggplot afterwards.'><!-- mathjax --><s
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -28,6 +28,7 @@ Title and axis labels can be added to the ggplot afterwards.'><!-- mathjax --><s
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/contrast_text.html

@@ -0,0 +1,138 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Calculates the best contrast text color for a given background color."><title>Contrast Text Color — contrast_text • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Contrast Text Color — contrast_text"><meta property="og:description" content="Calculates the best contrast text color for a given background color."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
+<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
+<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
+<![endif]--></head><body>
+    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
+    
+
+    <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
+    
+    <a class="navbar-brand me-2" href="../index.html">stRoke</a>
+
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
+
+    
+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+
+    <div id="navbar" class="collapse navbar-collapse ms-3">
+      <ul class="navbar-nav me-auto"><li class="active nav-item">
+  <a class="nav-link" href="../reference/index.html">Reference</a>
+</li>
+<li class="nav-item dropdown">
+  <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
+  <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
+    <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
+  </div>
+</li>
+<li class="nav-item">
+  <a class="nav-link" href="../news/index.html">Changelog</a>
+</li>
+      </ul><form class="form-inline my-2 my-lg-0" role="search">
+        <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
+
+      <ul class="navbar-nav"><li class="nav-item">
+  <a class="external-link nav-link" href="https://github.com/agdamsbo/stRoke/" aria-label="github">
+    <span class="fab fa fab fa-github fa-lg"></span>
+     
+  </a>
+</li>
+      </ul></div>
+
+    
+  </div>
+</nav><div class="container template-reference-topic">
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+      <img src="" class="logo" alt=""><h1>Contrast Text Color</h1>
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/R/contrast_text.R" class="external-link"><code>R/contrast_text.R</code></a></small>
+      <div class="d-none name"><code>contrast_text.Rd</code></div>
+    </div>
+
+    <div class="ref-description section level2">
+    <p>Calculates the best contrast text color for a given background color.</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">contrast_text</span><span class="op">(</span></span>
+<span>  <span class="va">background</span>,</span>
+<span>  light_text <span class="op">=</span> <span class="st">"white"</span>,</span>
+<span>  dark_text <span class="op">=</span> <span class="st">"black"</span>,</span>
+<span>  threshold <span class="op">=</span> <span class="fl">0.5</span>,</span>
+<span>  method <span class="op">=</span> <span class="st">"perceived_2"</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div class="section level2">
+    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
+    <dl><dt>background</dt>
+<dd><p>A hex/named color value that represents the background.</p></dd>
+
+
+<dt>light_text</dt>
+<dd><p>A hex/named color value that represents the light text color.</p></dd>
+
+
+<dt>dark_text</dt>
+<dd><p>A hex/named color value that represents the dark text color.</p></dd>
+
+
+<dt>threshold</dt>
+<dd><p>A numeric value between 0 and 1 that is used to determine
+the luminance threshold of the background color for text color.</p></dd>
+
+
+<dt>method</dt>
+<dd><p>A character string that specifies the method for calculating
+the luminance. Three different methods are available:
+c("relative","perceived","perceived_2")</p></dd>
+
+</dl></div>
+    <div class="section level2">
+    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
+    
+
+<p>A character string that contains the best contrast text color.</p>
+    </div>
+    <div class="section level2">
+    <h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
+    <p>This function aids in deciding the font color to print on a given background.
+The function is based on the example provided by teppo:
+https://stackoverflow.com/a/66669838/21019325.
+The different methods provided are based on the methods outlined in the
+StackOverflow thread: https://stackoverflow.com/questions/596216/formula-to-determine-perceived-brightness-of-rgb-color</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">contrast_text</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#F2F2F2"</span>, <span class="st">"blue"</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "black" "white"</span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="fu">contrast_text</span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#F2F2F2"</span>, <span class="st">"blue"</span><span class="op">)</span>, method<span class="op">=</span><span class="st">"relative"</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "black" "white"</span>
+</code></pre></div>
+    </div>
+  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+    </nav></aside></div>
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p></p><p>Developed by Andreas Gammelgaard Damsbo.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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+

docs/reference/cpr_check.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/cpr_dob.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/cpr_female.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/cprs.html

@@ -12,7 +12,7 @@ for testing purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ for testing purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/ds2dd.html

@@ -0,0 +1,183 @@
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+
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+
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+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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+    <div id="navbar" class="collapse navbar-collapse ms-3">
+      <ul class="navbar-nav me-auto"><li class="active nav-item">
+  <a class="nav-link" href="../reference/index.html">Reference</a>
+</li>
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+</nav><div class="container template-reference-topic">
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+      <img src="" class="logo" alt=""><h1>Data set to data dictionary function</h1>
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
+      <div class="d-none name"><code>ds2dd.Rd</code></div>
+    </div>
+
+    <div class="ref-description section level2">
+    <p>Data set to data dictionary function</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ds2dd</span><span class="op">(</span></span>
+<span>  <span class="va">ds</span>,</span>
+<span>  record.id <span class="op">=</span> <span class="st">"record_id"</span>,</span>
+<span>  form.name <span class="op">=</span> <span class="st">"basis"</span>,</span>
+<span>  field.type <span class="op">=</span> <span class="st">"text"</span>,</span>
+<span>  field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
+<span>  include.column.names <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div class="section level2">
+    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
+    <dl><dt>ds</dt>
+<dd><p>data set</p></dd>
+
+
+<dt>record.id</dt>
+<dd><p>name or column number of id variable, moved to first row of
+data dictionary, character of integer. Default is "record_id".</p></dd>
+
+
+<dt>form.name</dt>
+<dd><p>vector of form names, character string, length 1 or length
+equal to number of variables. Default is "basis".</p></dd>
+
+
+<dt>field.type</dt>
+<dd><p>vector of field types, character string, length 1 or length
+equal to number of variables. Default is "text.</p></dd>
+
+
+<dt>field.label</dt>
+<dd><p>vector of form names, character string, length 1 or length
+equal to number of variables. Default is NULL and is then identical to field
+names.</p></dd>
+
+
+<dt>include.column.names</dt>
+<dd><p>Flag to give detailed output including new
+column names for original data set for upload.</p></dd>
+
+</dl></div>
+    <div class="section level2">
+    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
+    
+
+<p>data.frame or list of data.frame and vector</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">talos</span><span class="op">$</span><span class="va">id</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/nrow.html" class="external-link">nrow</a></span><span class="op">(</span><span class="va">talos</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu">ds2dd</span><span class="op">(</span><span class="va">talos</span>, record.id<span class="op">=</span><span class="st">"id"</span>,include.column.names<span class="op">=</span><span class="cn">FALSE</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     field_name form_name section_header field_type  field_label</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1           id     basis             NA       text           id</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2       rtreat     basis             NA       text       rtreat</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3        mrs_1     basis             NA       text        mrs_1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4        mrs_6     basis             NA       text        mrs_6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 hypertension     basis             NA       text hypertension</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6     diabetes     basis             NA       text     diabetes</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7        civil     basis             NA       text        civil</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   select_choices_or_calculations field_note</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7                             NA         NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   text_validation_type_or_show_slider_number text_validation_min</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7                                         NA                  NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   text_validation_max identifier branching_logic required_field</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7                  NA         NA              NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   custom_alignment question_number matrix_group_name matrix_ranking</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7               NA              NA                NA             NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   field_annotation</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6               NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7               NA</span>
+</code></pre></div>
+    </div>
+  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+    </nav></aside></div>
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p></p><p>Developed by Andreas Gammelgaard Damsbo.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+</div>
+
+    </footer></div>
+
+  
+
+  
+
+  </body></html>
+

docs/reference/files_filter.html

@@ -12,7 +12,7 @@ provided filter."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ provided filter."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/generic_stroke.html

@@ -14,7 +14,7 @@ To dos: modify grottaBar and include as own function."><!-- mathjax --><script s
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -28,6 +28,7 @@ To dos: modify grottaBar and include as own function."><!-- mathjax --><script s
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -101,12 +102,12 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-in"><span>variables <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>,<span class="st">"diabetes"</span>,<span class="st">"civil"</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $`Table 1`</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="nbrhcfadcn" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="mhgykqimda" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;style&gt;html {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_table {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_table {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   display: table;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-collapse: collapse;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-left: auto;</span>
@@ -131,7 +132,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-left-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: center;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #FFFFFF;</span>
@@ -143,12 +144,12 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_caption {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_caption {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_title {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_title {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 125%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: initial;</span>
@@ -160,7 +161,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_subtitle {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_subtitle {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 85%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: initial;</span>
@@ -172,13 +173,13 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_bottom_border {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_bottom_border {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_col_headings {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_col_headings {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
@@ -193,7 +194,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_col_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_col_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -213,7 +214,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   overflow-x: hidden;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_column_spanner_outer {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_column_spanner_outer {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -225,15 +226,15 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_column_spanner_outer:first-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_column_spanner_outer:first-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_column_spanner_outer:last-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_column_spanner_outer:last-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_column_spanner {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_column_spanner {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
@@ -245,7 +246,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   width: 100%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_group_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_group_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -271,7 +272,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: left;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_empty_group_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_empty_group_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding: 0.5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
@@ -286,15 +287,15 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: middle;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_from_md &gt; :first-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_from_md &gt; :first-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-top: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_from_md &gt; :last-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_from_md &gt; :last-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-bottom: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -313,7 +314,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   overflow-x: hidden;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_stub {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_stub {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -326,7 +327,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_stub_row_group {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_stub_row_group {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -340,11 +341,11 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: top;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_row_group_first td {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_row_group_first td {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-transform: inherit;</span>
@@ -354,16 +355,16 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_first_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_first_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_first_summary_row.thick {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_first_summary_row.thick {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_last_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_last_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -373,7 +374,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_grand_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_grand_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-transform: inherit;</span>
@@ -383,7 +384,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_first_grand_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_first_grand_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -393,11 +394,11 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_striped {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_striped {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: rgba(128, 128, 128, 0.05);</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_table_body {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_table_body {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
@@ -406,7 +407,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_footnotes {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_footnotes {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: none;</span>
@@ -420,7 +421,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_footnote {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_footnote {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin: 0px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 90%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 4px;</span>
@@ -429,7 +430,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_sourcenotes {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_sourcenotes {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: none;</span>
@@ -443,7 +444,7 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_sourcenote {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_sourcenote {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 90%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 4px;</span>
@@ -451,64 +452,64 @@ To dos: modify grottaBar and include as own function.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_left {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_left {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: left;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_center {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_center {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: center;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_right {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_right {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: right;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-variant-numeric: tabular-nums;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_font_normal {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_font_normal {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: normal;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_font_bold {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_font_bold {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: bold;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_font_italic {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_font_italic {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-style: italic;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_super {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_super {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 65%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_footnote_marks {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_footnote_marks {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-style: italic;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: normal;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 75%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: 0.4em;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_asterisk {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_asterisk {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_indent_1 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_indent_1 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_indent_2 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_indent_2 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 10px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_indent_3 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_indent_3 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 15px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_indent_4 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_indent_4 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 20px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #nbrhcfadcn .gt_indent_5 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #mhgykqimda .gt_indent_5 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 25px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/style&gt;</span>

docs/reference/index.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -72,6 +73,11 @@
         <dd>Confidence interval plot with point estimate</dd>
       </dl><dl><dt>
           
+          <code><a href="contrast_text.html">contrast_text()</a></code> 
+        </dt>
+        <dd>Contrast Text Color</dd>
+      </dl><dl><dt>
+          
           <code><a href="cpr_check.html">cpr_check()</a></code> 
         </dt>
         <dd>CPR check</dd>
@@ -92,6 +98,11 @@
         <dd>Data frame of 200 cpr numbers</dd>
       </dl><dl><dt>
           
+          <code><a href="ds2dd.html">ds2dd()</a></code> 
+        </dt>
+        <dd>Data set to data dictionary function</dd>
+      </dl><dl><dt>
+          
           <code><a href="files_filter.html">files_filter()</a></code> 
         </dt>
         <dd>Filter files in a folder</dd>
@@ -112,6 +123,11 @@
         <dd>Helper function for labels in gtsummary</dd>
       </dl><dl><dt>
           
+          <code><a href="metadata_names.html">metadata_names</a></code> 
+        </dt>
+        <dd>Vector of REDCap metadata headers</dd>
+      </dl><dl><dt>
+          
           <code><a href="quantile_cut.html">quantile_cut()</a></code> 
         </dt>
         <dd>Easy function for splitting numeric variable in quantiles</dd>

docs/reference/index_plot.html

@@ -12,7 +12,7 @@ Includes option to facet."><!-- mathjax --><script src="https://cdnjs.cloudflare
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ Includes option to facet."><!-- mathjax --><script src="https://cdnjs.cloudflare
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/label_select.html

@@ -12,7 +12,7 @@ Alternative is to use attributes, eg from library(Hmisc).'><!-- mathjax --><scri
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ Alternative is to use attributes, eg from library(Hmisc).'><!-- mathjax --><scri
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -92,12 +93,12 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-in"><span><span class="st">'[Intercept]'</span><span class="op">~</span><span class="st">"Intercept"</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="talos.html">talos</a></span><span class="op">[</span><span class="va">vars</span><span class="op">]</span> <span class="op">|&gt;</span> </span></span>
 <span class="r-in"><span><span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">tbl_summary</a></span><span class="op">(</span>label <span class="op">=</span> <span class="fu">label_select</span><span class="op">(</span><span class="va">labels_all</span>,<span class="va">vars</span><span class="op">)</span><span class="op">)</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="adowkpfsxq" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="bdlvcttqpv" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   &lt;style&gt;html {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_table {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_table {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   display: table;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-collapse: collapse;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-left: auto;</span>
@@ -122,7 +123,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-left-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: center;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #FFFFFF;</span>
@@ -134,12 +135,12 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_caption {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_caption {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_title {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_title {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 125%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: initial;</span>
@@ -151,7 +152,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_subtitle {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_subtitle {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 85%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: initial;</span>
@@ -163,13 +164,13 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_bottom_border {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_bottom_border {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_col_headings {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_col_headings {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
@@ -184,7 +185,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_col_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_col_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -204,7 +205,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   overflow-x: hidden;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_column_spanner_outer {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_column_spanner_outer {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -216,15 +217,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_column_spanner_outer:first-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_column_spanner_outer:first-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_column_spanner_outer:last-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_column_spanner_outer:last-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_column_spanner {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_column_spanner {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
@@ -236,7 +237,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   width: 100%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_group_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_group_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -262,7 +263,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: left;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_empty_group_heading {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_empty_group_heading {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding: 0.5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
@@ -277,15 +278,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: middle;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_from_md &gt; :first-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_from_md &gt; :first-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-top: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_from_md &gt; :last-child {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_from_md &gt; :last-child {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin-bottom: 0;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -304,7 +305,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   overflow-x: hidden;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_stub {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_stub {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -317,7 +318,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_stub_row_group {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_stub_row_group {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
@@ -331,11 +332,11 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   vertical-align: top;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_row_group_first td {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_row_group_first td {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-transform: inherit;</span>
@@ -345,16 +346,16 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_first_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_first_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_first_summary_row.thick {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_first_summary_row.thick {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_last_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_last_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -364,7 +365,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_grand_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_grand_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-transform: inherit;</span>
@@ -374,7 +375,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_first_grand_summary_row {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_first_grand_summary_row {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 8px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 5px;</span>
@@ -384,11 +385,11 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_striped {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_striped {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: rgba(128, 128, 128, 0.05);</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_table_body {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_table_body {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-style: solid;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-width: 2px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-top-color: #D3D3D3;</span>
@@ -397,7 +398,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_footnotes {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_footnotes {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: none;</span>
@@ -411,7 +412,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_footnote {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_footnote {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   margin: 0px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 90%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-left: 4px;</span>
@@ -420,7 +421,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_sourcenotes {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_sourcenotes {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   color: #333333;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   background-color: #FFFFFF;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-bottom-style: none;</span>
@@ -434,7 +435,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   border-right-color: #D3D3D3;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_sourcenote {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_sourcenote {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 90%;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-top: 4px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-bottom: 4px;</span>
@@ -442,64 +443,64 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-out co"><span class="r-pr">#&gt;</span>   padding-right: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_left {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_left {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: left;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_center {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_center {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-align: center;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_right {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_right {</span>
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-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_font_normal {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_font_normal {</span>
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 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
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-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_font_bold {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_font_bold {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-weight: bold;</span>
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+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_font_italic {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-style: italic;</span>
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-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_super {</span>
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-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_footnote_marks {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_footnote_marks {</span>
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 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_asterisk {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_asterisk {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   font-size: 100%;</span>
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 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_indent_1 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_indent_1 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 5px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_indent_2 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_indent_2 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 10px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_indent_3 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_indent_3 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 15px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_indent_4 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_indent_4 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 20px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> #adowkpfsxq .gt_indent_5 {</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> #bdlvcttqpv .gt_indent_5 {</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   text-indent: 25px;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/style&gt;</span>

docs/reference/metadata_names.html

@@ -0,0 +1,95 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Vector of REDCap metadata headers"><title>Vector of REDCap metadata headers — metadata_names • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Vector of REDCap metadata headers — metadata_names"><meta property="og:description" content="Vector of REDCap metadata headers"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
+<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
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+<![endif]--></head><body>
+    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
+    
+
+    <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
+    
+    <a class="navbar-brand me-2" href="../index.html">stRoke</a>
+
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
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+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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+</li>
+      </ul><form class="form-inline my-2 my-lg-0" role="search">
+        <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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+</nav><div class="container template-reference-topic">
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+      <img src="" class="logo" alt=""><h1>Vector of REDCap metadata headers</h1>
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/R/metadata.R" class="external-link"><code>R/metadata.R</code></a></small>
+      <div class="d-none name"><code>metadata_names.Rd</code></div>
+    </div>
+
+    <div class="ref-description section level2">
+    <p>Vector of REDCap metadata headers</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">metadata_names</span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div class="section level2">
+    <h2 id="format">Format<a class="anchor" aria-label="anchor" href="#format"></a></h2>
+    <p>Vector of length 18 with REDCap metadata headers:</p><dl><dt>metadata_names</dt>
+<dd><p>characterstrings</p></dd>
+
+
+</dl></div>
+    <div class="section level2">
+    <h2 id="see-also">See also<a class="anchor" aria-label="anchor" href="#see-also"></a></h2>
+    <div class="dont-index"><p><a href="https://www.project-redcap.org/" class="external-link">https://www.project-redcap.org/</a></p></div>
+    </div>
+
+  </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
+    </nav></aside></div>
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p></p><p>Developed by Andreas Gammelgaard Damsbo.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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+

docs/reference/quantile_cut.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>
@@ -119,8 +120,8 @@ as borders in case of y!=NULL.</p></dd>
 <span class="r-in"><span><span class="va">x</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">450</span></span></span>
 <span class="r-in"><span><span class="va">y</span> <span class="op">&lt;-</span> <span class="fl">6</span><span class="op">:</span><span class="fl">750</span></span></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="fu">quantile_cut</span><span class="op">(</span><span class="va">aa</span>,groups<span class="op">=</span><span class="fl">4</span>,detail.list<span class="op">=</span><span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span> <span class="co">## Cuts quartiles</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>     [1,256]   (256,498]   (498,747] (747,1e+03] </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     [1,266]   (266,518]   (518,751] (751,1e+03] </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>         503         499         501         497 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         500         500         500         500 </span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>

docs/reference/score.html

@@ -12,7 +12,7 @@ five-dimensional cognitive test."><!-- mathjax --><script src="https://cdnjs.clo
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ five-dimensional cognitive test."><!-- mathjax --><script src="https://cdnjs.clo
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/source_lines.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/stRoke-package.html

@@ -16,7 +16,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -30,6 +30,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/talos.html

@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -24,6 +24,7 @@
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/win_prob.html

@@ -14,7 +14,7 @@ winning with a confidence interval an p-value testing."><!-- mathjax --><script
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -28,6 +28,7 @@ winning with a confidence interval an p-value testing."><!-- mathjax --><script
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/reference/write_ical.html

@@ -12,7 +12,7 @@ Export as .ics file using calendar::ic_write()."><!-- mathjax --><script src="ht
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.1.8</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.4.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -26,6 +26,7 @@ Export as .ics file using calendar::ic_write()."><!-- mathjax --><script src="ht
 <li class="nav-item dropdown">
   <a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
   <div class="dropdown-menu" aria-labelledby="dropdown-articles">
+    <a class="dropdown-item" href="../articles/ds2dd.html">ds2dd</a>
     <a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
   </div>
 </li>

docs/sitemap.xml

@@ -12,6 +12,9 @@
   <url>
     <loc>/articles/Toolbox.html</loc>
   </url>
+  <url>
+    <loc>/articles/ds2dd.html</loc>
+  </url>
   <url>
     <loc>/articles/index.html</loc>
   </url>
@@ -33,6 +36,9 @@
   <url>
     <loc>/reference/ci_plot.html</loc>
   </url>
+  <url>
+    <loc>/reference/contrast_text.html</loc>
+  </url>
   <url>
     <loc>/reference/cpr_check.html</loc>
   </url>
@@ -45,6 +51,9 @@
   <url>
     <loc>/reference/cprs.html</loc>
   </url>
+  <url>
+    <loc>/reference/ds2dd.html</loc>
+  </url>
   <url>
     <loc>/reference/files_filter.html</loc>
   </url>
@@ -63,6 +72,9 @@
   <url>
     <loc>/reference/label_select.html</loc>
   </url>
+  <url>
+    <loc>/reference/metadata_names.html</loc>
+  </url>
   <url>
     <loc>/reference/plot_olr.html</loc>
   </url>

inst/WORDLIST

@@ -14,6 +14,7 @@ REDCapRITS
 RStudio
 Randomisation
 STROKEAHA
+StackOverflow
 Sys
 TALOS
 Vectorised
@@ -51,6 +52,7 @@ gpttools
 grotta
 grottaBar
 gtsummary
+https
 ical
 icalendar
 ics
@@ -59,10 +61,14 @@ jan
 jss
 lm
 lst
+luminance
 mRS
 olr
 recognised
+rgb
 sapply
+stackoverflow
+teppo
 vapply
 vec
 winP

man/contrast_text.Rd

@@ -0,0 +1,46 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/contrast_text.R
+\name{contrast_text}
+\alias{contrast_text}
+\title{Contrast Text Color}
+\usage{
+contrast_text(
+  background,
+  light_text = "white",
+  dark_text = "black",
+  threshold = 0.5,
+  method = "perceived_2"
+)
+}
+\arguments{
+\item{background}{A hex/named color value that represents the background.}
+
+\item{light_text}{A hex/named color value that represents the light text color.}
+
+\item{dark_text}{A hex/named color value that represents the dark text color.}
+
+\item{threshold}{A numeric value between 0 and 1 that is used to determine
+the luminance threshold of the background color for text color.}
+
+\item{method}{A character string that specifies the method for calculating
+the luminance. Three different methods are available:
+c("relative","perceived","perceived_2")}
+}
+\value{
+A character string that contains the best contrast text color.
+}
+\description{
+Calculates the best contrast text color for a given background color.
+}
+\details{
+This function aids in deciding the font color to print on a given background.
+The function is based on the example provided by teppo:
+https://stackoverflow.com/a/66669838/21019325.
+The different methods provided are based on the methods outlined in the
+StackOverflow thread: https://stackoverflow.com/questions/596216/formula-to-determine-perceived-brightness-of-rgb-color
+}
+\examples{
+contrast_text(c("#F2F2F2", "blue"))
+
+contrast_text(c("#F2F2F2", "blue"), method="relative")
+}

man/ds2dd.Rd

@@ -0,0 +1,44 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/ds2dd.R
+\name{ds2dd}
+\alias{ds2dd}
+\title{Data set to data dictionary function}
+\usage{
+ds2dd(
+  ds,
+  record.id = "record_id",
+  form.name = "basis",
+  field.type = "text",
+  field.label = NULL,
+  include.column.names = FALSE
+)
+}
+\arguments{
+\item{ds}{data set}
+
+\item{record.id}{name or column number of id variable, moved to first row of
+data dictionary, character of integer. Default is "record_id".}
+
+\item{form.name}{vector of form names, character string, length 1 or length
+equal to number of variables. Default is "basis".}
+
+\item{field.type}{vector of field types, character string, length 1 or length
+equal to number of variables. Default is "text.}
+
+\item{field.label}{vector of form names, character string, length 1 or length
+equal to number of variables. Default is NULL and is then identical to field
+names.}
+
+\item{include.column.names}{Flag to give detailed output including new
+column names for original data set for upload.}
+}
+\value{
+data.frame or list of data.frame and vector
+}
+\description{
+Data set to data dictionary function
+}
+\examples{
+talos$id <- seq_len(nrow(talos))
+ds2dd(talos, record.id="id",include.column.names=FALSE)
+}

man/metadata_names.Rd

@@ -0,0 +1,22 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/metadata.R
+\docType{data}
+\name{metadata_names}
+\alias{metadata_names}
+\title{Vector of REDCap metadata headers}
+\format{
+Vector of length 18 with REDCap metadata headers:
+\describe{
+\item{metadata_names}{characterstrings}
+}
+}
+\usage{
+data(metadata_names)
+}
+\description{
+Vector of REDCap metadata headers
+}
+\seealso{
+\url{https://www.project-redcap.org/}
+}
+\keyword{datasets}

tests/testthat/test-contrast_text.R

@@ -0,0 +1,10 @@
+# Unit test for contrast_text()
+
+library(testthat)
+
+test_that("contrast_text() returns the correct text color", {
+  expect_equal(contrast_text("#FFFFFF"), "black")
+  expect_equal(contrast_text("#000000"), "white")
+  expect_equal(contrast_text("#FFFFFF", light_text="blue", dark_text="green"), "green")
+  expect_equal(contrast_text("#000000", light_text="blue", dark_text="green"), "blue")
+})

tests/testthat/test-ds2dd.R

@@ -0,0 +1,28 @@
+talos$id <- seq_len(nrow(talos))
+
+test_that("ds2dd gives desired output", {
+  expect_equal(ncol(ds2dd(talos, record.id="id")),18)
+  expect_s3_class(ds2dd(talos, record.id="id"),"data.frame")
+  expect_s3_class(ds2dd(talos,record.id = 7),"data.frame")
+})
+
+test_that("ds2dd gives output with list of length two", {
+  expect_equal(length(ds2dd(talos, record.id="id",include.column.names = TRUE)),2)
+})
+
+
+test_that("ds2dd gives correct errors", {
+  expect_error(ds2dd(talos))
+  expect_error(ds2dd(talos,form.name = c("basis","incl")))
+  expect_error(ds2dd(talos,field.type = c("text","dropdown")))
+  expect_error(ds2dd(talos,field.label = c("Name","Age")))
+})
+
+
+
+colnames(talos) <- c("rtreat", "mRS 1", "mRS 6", "hypertension", "diabetes", "civil", "id")
+
+test_that("ds2dd correctly renames", {
+  expect_equal(ncol(ds2dd(talos, record.id="id")),18)
+  expect_s3_class(ds2dd(talos, record.id="id"),"data.frame")
+})

vignettes/ds2dd.Rmd

@@ -0,0 +1,87 @@
+---
+title: "ds2dd"
+date: "`r Sys.Date()`"
+output: rmarkdown::html_vignette
+vignette: >
+  %\VignetteIndexEntry{ds2dd}
+  %\VignetteEngine{knitr::rmarkdown}
+  %\VignetteEncoding{UTF-8}
+---
+
+```{r, include = FALSE}
+knitr::opts_chunk$set(
+  collapse = TRUE,
+  comment = "#>"
+)
+```
+
+```{r setup}
+library(stRoke)
+```
+
+# Easy data set to data base workflow
+
+This function can be used as a simple tool for creating at data base metadata file for REDCap (called a DataDictionary) based on a given data set file.
+
+## Step 1 - Load your data set
+
+Here we'll use the sample TALOS dataset included with the package.
+
+```{r}
+data("talos")
+ds <- talos
+# As the data set lacks an ID column, one is added
+ds$id <- seq_len(nrow(ds))
+```
+
+## Step 2 - Create the DataDictionary
+
+```{r}
+datadictionary <- ds2dd(ds,record.id = "id",include.column.names = TRUE)
+```
+
+Now additional specifications to the DataDictionary can be made manually, or it can be uploaded and modified manually in the graphical user interface on the web page.
+
+The function will transform column names to lower case and substitute spaces for underscores. The output is a list with the DataDictionary and a vector of new column names for the dataset to fit the meta data.
+
+## Step 3 - Meta data upload
+
+Now the DataDictionary can be exported as a spreadsheet and uploaded or it can be uploaded using the `REDCapR` package (only projects with "Development" status).
+
+Use one of the two approaches below:
+
+### Manual upload
+
+```{r eval=FALSE}
+write.csv(datadictionary$DataDictionary,"datadictionary.csv")
+```
+
+### Upload with `REDCapR`
+
+```{r eval=FALSE}
+REDCapR::redcap_metadata_write(
+  datadictionary$DataDictionary,
+  redcap_uri = keyring::key_get("DB_URI"),
+  token = keyring::key_get("DB_TOKEN")
+)
+```
+
+In the ["REDCap R Handbook"](https://agdamsbo.github.io/redcap-r-handbook/) more is written on interfacing with REDCap in R using the `library(keyring)`to store credentials in [chapter 1.1](https://agdamsbo.github.io/redcap-r-handbook/access.html#sec-getting-access).
+
+## Step 4 - Data upload
+
+The same two options are available for data upload as meta data upload: manual og through `REDCapR`.
+
+Only the latter is shown here.
+
+```{r eval=FALSE}
+# new column nams are applied
+colnames(ds) <- datadictionary$`Column names`
+
+REDCapR::redcap_write(
+  ds,
+  redcap_uri = keyring::key_get("DB_URI"),
+  token = keyring::key_get("DB_TOKEN")
+)
+```
+

vignettes/toolbox.Rmd

@@ -1,5 +1,6 @@
 ---
 title: "Toolbox"
+date: "`r Sys.Date()`"
 output: rmarkdown::html_vignette
 vignette: >
   %\VignetteIndexEntry{Toolbox}