andreas/stRoke
1
0
Fork 0
mirror of https://github.com/agdamsbo/stRoke.git synced 2024-11-24 05:41:53 +01:00
Code Issues Packages Projects Releases Wiki Activity

minor edits

Browse Source
This commit is contained in:
AG Damsbo 2023-01-04 14:45:37 +01:00
parent 51c057d698
commit bda3cb666f
32 changed files with 326 additions and 176 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
R/source_lines.R
View File

@ -6,7 +6,6 @@
#' @param ... Additional arguments to be passed to \code{\link{source}}.
#'
#' @return The result of \code{\link{source}}.
#' @seealso \code{\link[gist by christophergandrud]{https://gist.github.com/christophergandrud/1eb4e095974204b12af9}}
#'
#' @examples
#' test_file <- tempfile(fileext = ".R")
@ -16,5 +15,7 @@
#' @export
#'
source_lines <- function(file, lines, ...){
# from gist by christophergandrud:
# https://gist.github.com/christophergandrud/1eb4e095974204b12af9
source(textConnection(readLines(file)[lines]), ...)
}

4
docs/404.html
View File

@ -39,8 +39,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

8
docs/articles/Toolbox.html
View File

@ -41,8 +41,8 @@
<li class="active nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -75,8 +75,8 @@
<img src="" class="logo" alt=""><h1>Toolbox</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/Toolbox.Rmd" class="external-link"><code>vignettes/Toolbox.Rmd</code></a></small>
<div class="d-none name"><code>Toolbox.Rmd</code></div>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/toolbox.Rmd" class="external-link"><code>vignettes/toolbox.Rmd</code></a></small>
<div class="d-none name"><code>toolbox.Rmd</code></div>
</div>

8
docs/articles/index.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -54,9 +54,9 @@
<h3>All vignettes</h3>
<p class="section-desc"></p>
<dl><dt><a href="Simple%20REDCap%20workflow.html">Simple REDCap workflow</a></dt>
<dl><dt><a href="redcap.html">Simple REDCap workflow</a></dt>
<dd>
</dd><dt><a href="Toolbox.html">Toolbox</a></dt>
</dd><dt><a href="toolbox.html">Toolbox</a></dt>
<dd>
</dd></dl></div>
</main></div>

145
docs/articles/redcap.html Normal file
View File

@ -0,0 +1,145 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="stRoke">
<title>Simple REDCap workflow • stRoke</title>
<script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet">
<script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple REDCap workflow">
<meta property="og:description" content="stRoke">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
</head>
<body>
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="../index.html">stRoke</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.23.1.1</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div id="navbar" class="collapse navbar-collapse ms-3">
<ul class="navbar-nav me-auto">
<li class="nav-item">
<a class="nav-link" href="../reference/index.html">Reference</a>
</li>
<li class="active nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
<a class="nav-link" href="../news/index.html">Changelog</a>
</li>
</ul>
<form class="form-inline my-2 my-lg-0" role="search">
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off">
</form>
<ul class="navbar-nav">
<li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/stRoke/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span>
</a>
</li>
</ul>
</div>
</div>
</nav><div class="container template-article">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Simple REDCap workflow</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/redcap.Rmd" class="external-link"><code>vignettes/redcap.Rmd</code></a></small>
<div class="d-none name"><code>redcap.Rmd</code></div>
</div>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://agdamsbo.github.io/stRoke/" class="external-link">stRoke</a></span><span class="op">)</span></span></code></pre></div>
<div class="section level2">
<h2 id="working-with-data-from-redcap">Working with data from REDCap<a class="anchor" aria-label="anchor" href="#working-with-data-from-redcap"></a>
</h2>
<p><a href="https://www.project-redcap.org" class="external-link">REDCap</a> is an excellent
tool for clinical data acquisition and storage. It is widely used world
wide and is the standard tool for medical research data in Denmark.</p>
<p>In the case of analysing data directly whole storing data in REDCap,
the API functionality is very convenient and secure, as you are not
storing (possibly) sensitive data permanently on your computer.</p>
<p>When using the “events” or “repeated instruments” functionality of
REDCap, the data storage format is a little confusing to work with, when
being accustomed to tidy data.</p>
<p>The <a href="https://ouhscbbmc.github.io/REDCapR/" class="external-link"><code>library(REDCapR)</code></a>
provides a simple way of working with data, however, the package just
exports data in standard format.</p>
<div class="section level3">
<h3 id="examples">Examples<a class="anchor" aria-label="anchor" href="#examples"></a>
</h3>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://ouhscbbmc.github.io/REDCapR/" class="external-link">REDCapR</a></span><span class="op">)</span></span>
<span><span class="co"># Returns the variables "record_id" and "age".</span></span>
<span><span class="va">ds_some_vars</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">redcap_read</a></span><span class="op">(</span></span>
<span> redcap_uri <span class="op">=</span> <span class="st">"https://redcap.au.dk/api/"</span>, <span class="co"># This is the address for projects at the AU-server</span></span>
<span> token <span class="op">=</span> <span class="st">"YOUR_API_KEY_GOES_HERE"</span>,</span>
<span> fields <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>, <span class="st">"age"</span><span class="op">)</span></span>
<span><span class="op">)</span><span class="op">$</span><span class="va">data</span> </span>
<span></span>
<span><span class="co"># Return only records with IDs of 1 and 4</span></span>
<span><span class="va">ds_some_rows</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">redcap_read</a></span><span class="op">(</span></span>
<span> redcap_uri <span class="op">=</span> <span class="st">"https://redcap.au.dk/api/"</span>, <span class="co"># This is the address for projects at the AU-server</span></span>
<span> token <span class="op">=</span> <span class="st">"YOUR_API_KEY_GOES_HERE"</span>,</span>
<span> records <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">4</span><span class="op">)</span></span>
<span><span class="op">)</span><span class="op">$</span><span class="va">data</span></span></code></pre></div>
</div>
</div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
</nav></aside>
</div>
<footer><div class="pkgdown-footer-left">
<p></p>
<p>Developed by Andreas Gammelgaard Damsbo.</p>
</div>
<div class="pkgdown-footer-right">
<p></p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div>
</footer>
</div>
</body>
</html>

4
docs/authors.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/index.html
View File

@ -47,8 +47,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/news/index.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="active nav-item">

6
docs/pkgdown.yml
View File

@ -2,7 +2,7 @@ pandoc: 2.19.2
pkgdown: 2.0.7
pkgdown_sha: ~
articles:
Simple REDCap workflow: Simple REDCap workflow.html
Toolbox: Toolbox.html
last_built: 2023-01-04T07:42Z
redcap: redcap.html
toolbox: toolbox.html
last_built: 2023-01-04T13:44Z

4
docs/reference/age_calc.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

7
docs/reference/ci_plot.html
View File

@ -26,8 +26,8 @@ Title and axis labels can be added to the ggplot afterwards.'><!-- mathjax --><s
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -61,7 +61,7 @@ Title and axis labels can be added to the ggplot afterwards.</p>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ci_plot</span><span class="op">(</span><span class="va">ds</span>, <span class="va">x</span>, <span class="va">y</span>, <span class="va">vars</span>, dec <span class="op">=</span> <span class="fl">3</span>, lbls <span class="op">=</span> <span class="cn">NULL</span>, title <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">ci_plot</span><span class="op">(</span><span class="va">ds</span>, <span class="va">x</span>, <span class="va">y</span>, vars <span class="op">=</span> <span class="cn">NULL</span>, dec <span class="op">=</span> <span class="fl">3</span>, lbls <span class="op">=</span> <span class="cn">NULL</span>, title <span class="op">=</span> <span class="cn">NULL</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
@ -105,7 +105,6 @@ Title and axis labels can be added to the ggplot afterwards.</p>
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">talos</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">talos</span><span class="op">[</span>,<span class="st">"mrs_1"</span><span class="op">]</span><span class="op">&lt;-</span><span class="fu"><a href="https://rdrr.io/r/base/factor.html" class="external-link">factor</a></span><span class="op">(</span><span class="va">talos</span><span class="op">[</span>,<span class="st">"mrs_1"</span><span class="op">]</span>,ordered<span class="op">=</span><span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">talos</span><span class="op">$</span><span class="va">bin</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/factor.html" class="external-link">factor</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span>, size <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/nrow.html" class="external-link">nrow</a></span><span class="op">(</span><span class="va">talos</span><span class="op">)</span>, replace <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">ci_plot</span><span class="op">(</span>ds <span class="op">=</span> <span class="va">talos</span>, x <span class="op">=</span> <span class="st">"rtreat"</span>, y <span class="op">=</span> <span class="st">"mrs_1"</span>, vars <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>,<span class="st">"diabetes"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
<span class="r-plt img"><img src="ci_plot-1.png" alt="" width="700" height="433"></span>

4
docs/reference/cpr_check.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/reference/cpr_dob.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/reference/cpr_female.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/reference/cprs.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

98
docs/reference/generic_stroke.html
View File

@ -28,8 +28,8 @@ To dos: modify grottaBar and include as own function."><!-- mathjax --><script s
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -101,12 +101,12 @@ To dos: modify grottaBar and include as own function.</p>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">generic_stroke</span><span class="op">(</span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="talos.html">talos</a></span>, <span class="st">"rtreat"</span>, <span class="st">"mrs_6"</span>, variables <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>,<span class="st">"diabetes"</span>,<span class="st">"civil"</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $`Table 1`</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="rbkdahqdro" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="jmeyrgpmxa" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;style&gt;html {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_table {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_table {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> display: table;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-collapse: collapse;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-left: auto;</span>
@ -131,7 +131,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-left-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: center;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #FFFFFF;</span>
@ -143,12 +143,12 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_caption {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_caption {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_title {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_title {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 125%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: initial;</span>
@ -160,7 +160,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_subtitle {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_subtitle {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 85%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: initial;</span>
@ -172,13 +172,13 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_bottom_border {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_bottom_border {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_col_headings {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_col_headings {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
@ -193,7 +193,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_col_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_col_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -213,7 +213,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> overflow-x: hidden;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_column_spanner_outer {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_column_spanner_outer {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -225,15 +225,15 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_column_spanner_outer:first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_column_spanner_outer:first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_column_spanner_outer:last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_column_spanner_outer:last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_column_spanner {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_column_spanner {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
@ -245,7 +245,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> width: 100%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -271,7 +271,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: left;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_empty_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_empty_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding: 0.5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
@ -286,15 +286,15 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: middle;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_from_md &gt; :first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_from_md &gt; :first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-top: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_from_md &gt; :last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_from_md &gt; :last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-bottom: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -313,7 +313,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> overflow-x: hidden;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_stub {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_stub {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -326,7 +326,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_stub_row_group {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_stub_row_group {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -340,11 +340,11 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: top;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_row_group_first td {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_row_group_first td {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-transform: inherit;</span>
@ -354,16 +354,16 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_first_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_first_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_first_summary_row.thick {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_first_summary_row.thick {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_last_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_last_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -373,7 +373,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-transform: inherit;</span>
@ -383,7 +383,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_first_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_first_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -393,11 +393,11 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_striped {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_striped {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: rgba(128, 128, 128, 0.05);</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_table_body {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_table_body {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
@ -406,7 +406,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_footnotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_footnotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: none;</span>
@ -420,7 +420,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_footnote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_footnote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin: 0px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 90%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 4px;</span>
@ -429,7 +429,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_sourcenotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_sourcenotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: none;</span>
@ -443,7 +443,7 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_sourcenote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_sourcenote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 90%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 4px;</span>
@ -451,64 +451,64 @@ To dos: modify grottaBar and include as own function.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_left {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_left {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: left;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_center {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_center {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: center;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_right {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_right {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: right;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-variant-numeric: tabular-nums;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_font_normal {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_font_normal {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: normal;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_font_bold {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_font_bold {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: bold;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_font_italic {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_font_italic {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-style: italic;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_super {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_super {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 65%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_footnote_marks {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_footnote_marks {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-style: italic;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: normal;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 75%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: 0.4em;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_asterisk {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_asterisk {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_indent_1 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_indent_1 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_indent_2 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_indent_2 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 10px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_indent_3 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_indent_3 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 15px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_indent_4 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_indent_4 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 20px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #rbkdahqdro .gt_indent_5 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jmeyrgpmxa .gt_indent_5 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 25px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/style&gt;</span>

6
docs/reference/index.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -130,7 +130,7 @@
<code><a href="source_lines.html">source_lines()</a></code>
</dt>
<dd>Source only specific lines from an R file</dd>
<dd>Source Lines from a File</dd>
</dl><dl><dt>
<code><a href="talos.html">talos</a></code>

4
docs/reference/index_plot.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

98
docs/reference/label_select.html
View File

@ -26,8 +26,8 @@ Alternative is to use attributes, eg from library(Hmisc).'><!-- mathjax --><scri
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -92,12 +92,12 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-in"><span><span class="va">mrs_6</span><span class="op">~</span><span class="st">"Six months mRS"</span>, </span></span>
<span class="r-in"><span><span class="st">'[Intercept]'</span><span class="op">~</span><span class="st">"Intercept"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="talos.html">talos</a></span><span class="op">[</span><span class="va">vars</span><span class="op">]</span> <span class="op">|&gt;</span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">tbl_summary</a></span><span class="op">(</span>label <span class="op">=</span> <span class="fu">label_select</span><span class="op">(</span><span class="va">labels_all</span>,<span class="va">vars</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="jzyezuuocq" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;div id="tyostpccgd" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;style&gt;html {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_table {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_table {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> display: table;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-collapse: collapse;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-left: auto;</span>
@ -122,7 +122,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-left-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: center;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #FFFFFF;</span>
@ -134,12 +134,12 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_caption {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_caption {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_title {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_title {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 125%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: initial;</span>
@ -151,7 +151,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_subtitle {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_subtitle {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 85%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: initial;</span>
@ -163,13 +163,13 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_bottom_border {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_bottom_border {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_col_headings {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_col_headings {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
@ -184,7 +184,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_col_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_col_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -204,7 +204,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> overflow-x: hidden;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_column_spanner_outer {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_column_spanner_outer {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -216,15 +216,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_column_spanner_outer:first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_column_spanner_outer:first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_column_spanner_outer:last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_column_spanner_outer:last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_column_spanner {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_column_spanner {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
@ -236,7 +236,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> width: 100%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -262,7 +262,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: left;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_empty_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_empty_group_heading {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding: 0.5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
@ -277,15 +277,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: middle;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_from_md &gt; :first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_from_md &gt; :first-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-top: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_from_md &gt; :last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_from_md &gt; :last-child {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin-bottom: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -304,7 +304,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> overflow-x: hidden;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_stub {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_stub {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -317,7 +317,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_stub_row_group {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_stub_row_group {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
@ -331,11 +331,11 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: top;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_row_group_first td {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_row_group_first td {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-transform: inherit;</span>
@ -345,16 +345,16 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_first_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_first_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_first_summary_row.thick {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_first_summary_row.thick {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_last_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_last_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -364,7 +364,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-transform: inherit;</span>
@ -374,7 +374,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_first_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_first_grand_summary_row {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 8px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 5px;</span>
@ -384,11 +384,11 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_striped {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_striped {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: rgba(128, 128, 128, 0.05);</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_table_body {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_table_body {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-style: solid;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-width: 2px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-top-color: #D3D3D3;</span>
@ -397,7 +397,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_footnotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_footnotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: none;</span>
@ -411,7 +411,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_footnote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_footnote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> margin: 0px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 90%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-left: 4px;</span>
@ -420,7 +420,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_sourcenotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_sourcenotes {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> color: #333333;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> background-color: #FFFFFF;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> border-bottom-style: none;</span>
@ -434,7 +434,7 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> border-right-color: #D3D3D3;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_sourcenote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_sourcenote {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 90%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-top: 4px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-bottom: 4px;</span>
@ -442,64 +442,64 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
<span class="r-out co"><span class="r-pr">#&gt;</span> padding-right: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_left {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_left {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: left;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_center {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_center {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: center;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_right {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_right {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-align: right;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-variant-numeric: tabular-nums;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_font_normal {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_font_normal {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: normal;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_font_bold {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_font_bold {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: bold;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_font_italic {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_font_italic {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-style: italic;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_super {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_super {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 65%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_footnote_marks {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_footnote_marks {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-style: italic;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-weight: normal;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 75%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: 0.4em;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_asterisk {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_asterisk {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> font-size: 100%;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> vertical-align: 0;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_indent_1 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_indent_1 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 5px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_indent_2 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_indent_2 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 10px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_indent_3 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_indent_3 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 15px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_indent_4 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_indent_4 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 20px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #jzyezuuocq .gt_indent_5 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> #tyostpccgd .gt_indent_5 {</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> text-indent: 25px;</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;/style&gt;</span>

BIN
docs/reference/plot_olr-1.png
View File

Binary file not shown.
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 88 KiB

After

Width:  |  Height:  |  Size: 89 KiB

4
docs/reference/plot_olr.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

8
docs/reference/quantile_cut.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -117,8 +117,8 @@
<span class="r-in"><span><span class="va">x</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">450</span></span></span>
<span class="r-in"><span><span class="va">y</span> <span class="op">&lt;-</span> <span class="fl">6</span><span class="op">:</span><span class="fl">750</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="fu">quantile_cut</span><span class="op">(</span><span class="va">aa</span>,groups<span class="op">=</span><span class="fl">4</span>,detail.list<span class="op">=</span><span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span> <span class="co">## Cuts quartiles</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1,247] (247,497] (497,745] (745,1e+03] </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 501 501 498 500 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1,245] (245,498] (498,756] (756,1e+03] </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 500 500 500 500 </span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>

4
docs/reference/read_redcap_tables.html
View File

@ -26,8 +26,8 @@ Handles"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mat
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/reference/score.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

32
docs/reference/source_lines.html
View File

@ -1,7 +1,5 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Copied from a gist by christophergandrud (https://gist.github.com/christophergandrud/1eb4e095974204b12af9)
This function is really helpfull when working on eg sst.dk-servers. You can not load packages, so you have to re-write this function. It is short, and you will manage!"><title>Source only specific lines from an R file — source_lines • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Source only specific lines from an R file — source_lines"><meta property="og:description" content="Copied from a gist by christophergandrud (https://gist.github.com/christophergandrud/1eb4e095974204b12af9)
This function is really helpfull when working on eg sst.dk-servers. You can not load packages, so you have to re-write this function. It is short, and you will manage!"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Sources specific lines from a file"><title>Source Lines from a File — source_lines • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Source Lines from a File — source_lines"><meta property="og:description" content="Sources specific lines from a file"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body>
@ -26,8 +24,8 @@ This function is really helpfull when working on eg sst.dk-servers. You can not
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">
@ -49,14 +47,13 @@ This function is really helpfull when working on eg sst.dk-servers. You can not
</nav><div class="container template-reference-topic">
<div class="row">
<main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Source only specific lines from an R file</h1>
<img src="" class="logo" alt=""><h1>Source Lines from a File</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/R/source_lines.R" class="external-link"><code>R/source_lines.R</code></a></small>
<div class="d-none name"><code>source_lines.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Copied from a gist by christophergandrud (https://gist.github.com/christophergandrud/1eb4e095974204b12af9)
This function is really helpfull when working on eg sst.dk-servers. You can not load packages, so you have to re-write this function. It is short, and you will manage!</p>
<p>Sources specific lines from a file</p>
</div>
<div class="section level2">
@ -67,24 +64,35 @@ This function is really helpfull when working on eg sst.dk-servers. You can not
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>file</dt>
<dd><p>character string with path to the source file</p></dd>
<dd><p>A character string giving the path to the file to be sourced.</p></dd>
<dt>lines</dt>
<dd><p>numeric vector of the lines to source from 'file'</p></dd>
<dd><p>A numeric vector of line numbers to be sourced.</p></dd>
<dt>...</dt>
<dd><p>further arguments to be passed to source</p></dd>
<dd><p>Additional arguments to be passed to <code><a href="https://rdrr.io/r/base/source.html" class="external-link">source</a></code>.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list</p>
<p>The result of <code><a href="https://rdrr.io/r/base/source.html" class="external-link">source</a></code>.</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">test_file</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/tempfile.html" class="external-link">tempfile</a></span><span class="op">(</span>fileext <span class="op">=</span> <span class="st">".R"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/writeLines.html" class="external-link">writeLines</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"# Line 1"</span>, <span class="st">"2+2"</span>, <span class="st">"# Line 3"</span><span class="op">)</span>, <span class="va">test_file</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu">source_lines</span><span class="op">(</span><span class="va">test_file</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">2</span>, echo<span class="op">=</span><span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> &gt; 2 + 2</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] 4</span>
<span class="r-in"><span></span></span>
</code></pre></div>
</div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
</nav></aside></div>

4
docs/reference/stRoke-package.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

4
docs/reference/talos.html
View File

@ -24,8 +24,8 @@
<li class="nav-item dropdown">
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
<a class="dropdown-item" href="../articles/Simple%20REDCap%20workflow.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/Toolbox.html">Toolbox</a>
<a class="dropdown-item" href="../articles/redcap.html">Simple REDCap workflow</a>
<a class="dropdown-item" href="../articles/toolbox.html">Toolbox</a>
</div>
</li>
<li class="nav-item">

2
docs/search.json
View File

File diff suppressed because one or more lines are too long

3
docs/sitemap.xml
View File

@ -15,6 +15,9 @@
<url>
<loc>/articles/index.html</loc>
</url>
<url>
<loc>/articles/redcap.html</loc>
</url>
<url>
<loc>/authors.html</loc>
</url>

13
inst/WORDLIST
View File

@ -1,6 +1,6 @@
Andreas
CMD
Gammelgaard
Github
NA's
OLR
ORCID
@ -13,11 +13,12 @@ Randomisation
Sys
TALOS
Vectorised
af
agdamsbo
analysing
calc
chatgpt
christophergandrud
ci
codecov
colname
colouring
cpr
@ -26,27 +27,23 @@ daDoctoR
ddmmyy
ddmmyyxxxx
df
dk
difftime
doi
eb
eeptools
eg
forrestplot
gg
ggplot
github
gpttools
grotta
grottaBar
gtsummary
helpfull
https
jss
lst
mRS
olr
polr
sst
uri
vec
www

3
man/source_lines.Rd
View File

@ -25,6 +25,3 @@ writeLines(c("# Line 1", "2+2", "# Line 3"), test_file)
source_lines(test_file, 1:2, echo=TRUE)
}
\seealso{
\code{\link[gist by christophergandrud]{https://gist.github.com/christophergandrud/1eb4e095974204b12af9}}
}

2
vignettes/redcap.Rmd
View File

@ -2,7 +2,7 @@
title: "Simple REDCap workflow"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{redcap}
%\VignetteIndexEntry{Simple REDCap workflow}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
---