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AG Damsbo 2022-09-22 14:47:33 +02:00
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commit a51753b2dd
9 changed files with 13 additions and 8 deletions
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1
DESCRIPTION
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@ -5,6 +5,7 @@ Authors@R:
person("Andreas Gammelgaard", "Damsbo", , "agdamsbo@clin.au.dk", role = c("aut", "cre"), person("Andreas Gammelgaard", "Damsbo", , "agdamsbo@clin.au.dk", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7559-1154")) comment = c(ORCID = "0000-0002-7559-1154"))
Description: R functions for convenient data management an danalysis in health research. Description: R functions for convenient data management an danalysis in health research.
The package is mainly collected for personal use.
For a start this package migrates functions from the agdamsbo/daDoctoR-package. For a start this package migrates functions from the agdamsbo/daDoctoR-package.
License: GPL-3 License: GPL-3
Encoding: UTF-8 Encoding: UTF-8

2
R/age_calc.R
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@ -90,5 +90,5 @@ age_calc<-function (dob, enddate = Sys.Date(), units = "years", precise = TRUE)
else { else {
stop("Unrecognized units. Please choose years, months, or days.") stop("Unrecognized units. Please choose years, months, or days.")
} }
return(result) result
} }

2
docs/index.html
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@ -6,6 +6,7 @@
<meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="R functions for convenient data management an danalysis in health research. <meta name="description" content="R functions for convenient data management an danalysis in health research.
The package is mainly collected for personal use.
For a start this package migrates functions from the agdamsbo/daDoctoR-package."> For a start this package migrates functions from the agdamsbo/daDoctoR-package.">
<title>Providing tools for work in clinical stroke research. • stRoke</title> <title>Providing tools for work in clinical stroke research. • stRoke</title>
<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
@ -14,6 +15,7 @@
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"> <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
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<meta property="og:description" content="R functions for convenient data management an danalysis in health research. <meta property="og:description" content="R functions for convenient data management an danalysis in health research.
The package is mainly collected for personal use.
For a start this package migrates functions from the agdamsbo/daDoctoR-package."> For a start this package migrates functions from the agdamsbo/daDoctoR-package.">
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>

2
docs/pkgdown.yml
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@ -2,5 +2,5 @@ pandoc: 2.19.2
pkgdown: 2.0.6 pkgdown: 2.0.6
pkgdown_sha: ~ pkgdown_sha: ~
articles: {} articles: {}
last_built: 2022-09-22T12:36Z last_built: 2022-09-22T12:43Z

4
docs/reference/stRoke-package.html
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@ -1,5 +1,5 @@
<!DOCTYPE html> <!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="R functions for convenient data management an danalysis in health research. For a start this package migrates functions from the agdamsbo/daDoctoR-package."><title>stRoke: Providing tools for work in clinical stroke research. — stRoke-package • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="stRoke: Providing tools for work in clinical stroke research. — stRoke-package"><meta property="og:description" content="R functions for convenient data management an danalysis in health research. For a start this package migrates functions from the agdamsbo/daDoctoR-package."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="R functions for convenient data management an danalysis in health research. The package is mainly collected for personal use. For a start this package migrates functions from the agdamsbo/daDoctoR-package."><title>stRoke: Providing tools for work in clinical stroke research. — stRoke-package • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="stRoke: Providing tools for work in clinical stroke research. — stRoke-package"><meta property="og:description" content="R functions for convenient data management an danalysis in health research. The package is mainly collected for personal use. For a start this package migrates functions from the agdamsbo/daDoctoR-package."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body> <![endif]--></head><body>
@ -37,7 +37,7 @@
</div> </div>
<div class="ref-description section level2"> <div class="ref-description section level2">
<p>R functions for convenient data management an danalysis in health research. For a start this package migrates functions from the agdamsbo/daDoctoR-package.</p> <p>R functions for convenient data management an danalysis in health research. The package is mainly collected for personal use. For a start this package migrates functions from the agdamsbo/daDoctoR-package.</p>
</div> </div>

2
docs/search.json
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2
man/stRoke-package.Rd
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@ -6,7 +6,7 @@
\alias{stRoke-package} \alias{stRoke-package}
\title{stRoke: Providing tools for work in clinical stroke research.} \title{stRoke: Providing tools for work in clinical stroke research.}
\description{ \description{
R functions for convenient data management an danalysis in health research. For a start this package migrates functions from the agdamsbo/daDoctoR-package. R functions for convenient data management an danalysis in health research. The package is mainly collected for personal use. For a start this package migrates functions from the agdamsbo/daDoctoR-package.
} }
\author{ \author{
\strong{Maintainer}: Andreas Gammelgaard Damsbo \email{agdamsbo@clin.au.dk} (\href{https://orcid.org/0000-0002-7559-1154}{ORCID}) \strong{Maintainer}: Andreas Gammelgaard Damsbo \email{agdamsbo@clin.au.dk} (\href{https://orcid.org/0000-0002-7559-1154}{ORCID})

4
setup help.R
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@ -18,8 +18,8 @@ source("ver_upd.R")
updatePackageVersion() updatePackageVersion()
# Commit and push # Commit and push
commit_message<-"Version naming updated, script added" commit_message<-"Updated description"
git2r::commit(all=TRUE, message=paste(commit_message,lubridate::now())) git2r::commit(all=TRUE, message=paste(commit_message,lubridate::now()))
system("/usr/bin/git push origin HEAD:refs/heads/master") system("/usr/bin/git push origin HEAD:refs/heads/main")

2
tests/testthat/test-age_calc.R
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@ -2,3 +2,5 @@ test_that("age_calc works for vectors of length 1 (scalars)", {
result<-age_calc(as.Date("1945-10-23"),as.Date("2018-09-30")) result<-age_calc(as.Date("1945-10-23"),as.Date("2018-09-30"))
expect_equal(round(result), 73) expect_equal(round(result), 73)
}) })
================================================================================