diff --git a/404.html b/404.html
index 0258e17..6ac6249 100644
--- a/404.html
+++ b/404.html
@@ -31,7 +31,7 @@
     
     <a class="navbar-brand me-2" href="https://agdamsbo.github.io/stRoke/index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/ds2dd.html b/articles/ds2dd.html
index 2b67cd0..daa3d8c 100644
--- a/articles/ds2dd.html
+++ b/articles/ds2dd.html
@@ -33,7 +33,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/index.html b/articles/index.html
index 8e31b53..2180ea6 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/toolbox.html b/articles/toolbox.html
index a874ead..4b1d8dd 100644
--- a/articles/toolbox.html
+++ b/articles/toolbox.html
@@ -33,7 +33,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -223,23 +223,23 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span>               variables <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"hypertension"</span>, <span class="st">"diabetes"</span>, <span class="st">"civil"</span><span class="op">)</span><span class="op">)</span></span>
 <span><span class="co">#&gt; Waiting for profiling to be done...</span></span>
 <span><span class="co">#&gt; $`Table 1`</span></span>
-<span><span class="co">#&gt; &lt;div id="stoxlxdalk" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span></span>
-<span><span class="co">#&gt;   &lt;style&gt;#stoxlxdalk table {</span></span>
+<span><span class="co">#&gt; &lt;div id="bttbarpkzh" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"&gt;</span></span>
+<span><span class="co">#&gt;   &lt;style&gt;#bttbarpkzh table {</span></span>
 <span><span class="co">#&gt;   font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';</span></span>
 <span><span class="co">#&gt;   -webkit-font-smoothing: antialiased;</span></span>
 <span><span class="co">#&gt;   -moz-osx-font-smoothing: grayscale;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk thead, #stoxlxdalk tbody, #stoxlxdalk tfoot, #stoxlxdalk tr, #stoxlxdalk td, #stoxlxdalk th {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh thead, #bttbarpkzh tbody, #bttbarpkzh tfoot, #bttbarpkzh tr, #bttbarpkzh td, #bttbarpkzh th {</span></span>
 <span><span class="co">#&gt;   border-style: none;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk p {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh p {</span></span>
 <span><span class="co">#&gt;   margin: 0;</span></span>
 <span><span class="co">#&gt;   padding: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_table {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_table {</span></span>
 <span><span class="co">#&gt;   display: table;</span></span>
 <span><span class="co">#&gt;   border-collapse: collapse;</span></span>
 <span><span class="co">#&gt;   line-height: normal;</span></span>
@@ -265,12 +265,12 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-left-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_caption {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_caption {</span></span>
 <span><span class="co">#&gt;   padding-top: 4px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 4px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_title {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_title {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   font-size: 125%;</span></span>
 <span><span class="co">#&gt;   font-weight: initial;</span></span>
@@ -282,7 +282,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-width: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_subtitle {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_subtitle {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   font-size: 85%;</span></span>
 <span><span class="co">#&gt;   font-weight: initial;</span></span>
@@ -294,7 +294,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-top-width: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_heading {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_heading {</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-align: center;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #FFFFFF;</span></span>
@@ -306,13 +306,13 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_bottom_border {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_bottom_border {</span></span>
 <span><span class="co">#&gt;   border-bottom-style: solid;</span></span>
 <span><span class="co">#&gt;   border-bottom-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_col_headings {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_col_headings {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
@@ -327,7 +327,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_col_heading {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_col_heading {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -347,7 +347,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   overflow-x: hidden;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_column_spanner_outer {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_column_spanner_outer {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -359,15 +359,15 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 4px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_column_spanner_outer:first-child {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_column_spanner_outer:first-child {</span></span>
 <span><span class="co">#&gt;   padding-left: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_column_spanner_outer:last-child {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_column_spanner_outer:last-child {</span></span>
 <span><span class="co">#&gt;   padding-right: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_column_spanner {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_column_spanner {</span></span>
 <span><span class="co">#&gt;   border-bottom-style: solid;</span></span>
 <span><span class="co">#&gt;   border-bottom-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
@@ -379,11 +379,11 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   width: 100%;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_spanner_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_spanner_row {</span></span>
 <span><span class="co">#&gt;   border-bottom-style: hidden;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_group_heading {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_group_heading {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -409,7 +409,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   text-align: left;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_empty_group_heading {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_empty_group_heading {</span></span>
 <span><span class="co">#&gt;   padding: 0.5px;</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
@@ -424,15 +424,15 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   vertical-align: middle;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_from_md &gt; :first-child {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_from_md &gt; :first-child {</span></span>
 <span><span class="co">#&gt;   margin-top: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_from_md &gt; :last-child {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_from_md &gt; :last-child {</span></span>
 <span><span class="co">#&gt;   margin-bottom: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -451,7 +451,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   overflow-x: hidden;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_stub {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_stub {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -464,7 +464,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_stub_row_group {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_stub_row_group {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
@@ -478,15 +478,15 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   vertical-align: top;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_row_group_first td {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_row_group_first td {</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_row_group_first th {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_row_group_first th {</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_summary_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_summary_row {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-transform: inherit;</span></span>
@@ -496,16 +496,16 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_first_summary_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_first_summary_row {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_first_summary_row.thick {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_first_summary_row.thick {</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_last_summary_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_last_summary_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -515,7 +515,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_grand_summary_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_grand_summary_row {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   text-transform: inherit;</span></span>
@@ -525,7 +525,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_first_grand_summary_row {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_first_grand_summary_row {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -535,7 +535,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_last_grand_summary_row_top {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_last_grand_summary_row_top {</span></span>
 <span><span class="co">#&gt;   padding-top: 8px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 8px;</span></span>
 <span><span class="co">#&gt;   padding-left: 5px;</span></span>
@@ -545,11 +545,11 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_striped {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_striped {</span></span>
 <span><span class="co">#&gt;   background-color: rgba(128, 128, 128, 0.05);</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_table_body {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_table_body {</span></span>
 <span><span class="co">#&gt;   border-top-style: solid;</span></span>
 <span><span class="co">#&gt;   border-top-width: 2px;</span></span>
 <span><span class="co">#&gt;   border-top-color: #D3D3D3;</span></span>
@@ -558,7 +558,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-bottom-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_footnotes {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_footnotes {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   border-bottom-style: none;</span></span>
@@ -572,7 +572,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_footnote {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_footnote {</span></span>
 <span><span class="co">#&gt;   margin: 0px;</span></span>
 <span><span class="co">#&gt;   font-size: 90%;</span></span>
 <span><span class="co">#&gt;   padding-top: 4px;</span></span>
@@ -581,7 +581,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_sourcenotes {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_sourcenotes {</span></span>
 <span><span class="co">#&gt;   color: #333333;</span></span>
 <span><span class="co">#&gt;   background-color: #FFFFFF;</span></span>
 <span><span class="co">#&gt;   border-bottom-style: none;</span></span>
@@ -595,7 +595,7 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   border-right-color: #D3D3D3;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_sourcenote {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_sourcenote {</span></span>
 <span><span class="co">#&gt;   font-size: 90%;</span></span>
 <span><span class="co">#&gt;   padding-top: 4px;</span></span>
 <span><span class="co">#&gt;   padding-bottom: 4px;</span></span>
@@ -603,63 +603,63 @@ model plot (with <code><a href="../reference/ci_plot.html">stRoke::ci_plot()</a>
 <span><span class="co">#&gt;   padding-right: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_left {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_left {</span></span>
 <span><span class="co">#&gt;   text-align: left;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_center {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_center {</span></span>
 <span><span class="co">#&gt;   text-align: center;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_right {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_right {</span></span>
 <span><span class="co">#&gt;   text-align: right;</span></span>
 <span><span class="co">#&gt;   font-variant-numeric: tabular-nums;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_font_normal {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_font_normal {</span></span>
 <span><span class="co">#&gt;   font-weight: normal;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_font_bold {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_font_bold {</span></span>
 <span><span class="co">#&gt;   font-weight: bold;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_font_italic {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_font_italic {</span></span>
 <span><span class="co">#&gt;   font-style: italic;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_super {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_super {</span></span>
 <span><span class="co">#&gt;   font-size: 65%;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_footnote_marks {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_footnote_marks {</span></span>
 <span><span class="co">#&gt;   font-size: 75%;</span></span>
 <span><span class="co">#&gt;   vertical-align: 0.4em;</span></span>
 <span><span class="co">#&gt;   position: initial;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_asterisk {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_asterisk {</span></span>
 <span><span class="co">#&gt;   font-size: 100%;</span></span>
 <span><span class="co">#&gt;   vertical-align: 0;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_indent_1 {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_indent_1 {</span></span>
 <span><span class="co">#&gt;   text-indent: 5px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_indent_2 {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_indent_2 {</span></span>
 <span><span class="co">#&gt;   text-indent: 10px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_indent_3 {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_indent_3 {</span></span>
 <span><span class="co">#&gt;   text-indent: 15px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_indent_4 {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_indent_4 {</span></span>
 <span><span class="co">#&gt;   text-indent: 20px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; </span></span>
-<span><span class="co">#&gt; #stoxlxdalk .gt_indent_5 {</span></span>
+<span><span class="co">#&gt; #bttbarpkzh .gt_indent_5 {</span></span>
 <span><span class="co">#&gt;   text-indent: 25px;</span></span>
 <span><span class="co">#&gt; }</span></span>
 <span><span class="co">#&gt; &lt;/style&gt;</span></span>
diff --git a/authors.html b/authors.html
index 7f8432f..aa94d28 100644
--- a/authors.html
+++ b/authors.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/index.html b/index.html
index 518f0df..7d7760e 100644
--- a/index.html
+++ b/index.html
@@ -47,7 +47,7 @@
     
     <a class="navbar-brand me-2" href="index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/news/index.html b/news/index.html
index fb24050..ef2d6ef 100644
--- a/news/index.html
+++ b/news/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -51,6 +51,13 @@
       <small>Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
+    <div class="section level2">
+<h2 class="pkg-version" data-toc-text="23.6.3" id="stroke-2363">stRoke 23.6.3<a class="anchor" aria-label="anchor" href="#stroke-2363"></a></h2>
+<div class="section level4">
+<h4 id="bug-23-6-3">Bug<a class="anchor" aria-label="anchor" href="#bug-23-6-3"></a></h4>
+<ul><li>Fixed <code><a href="../reference/ds2dd.html">ds2dd()</a></code> bug after first practical implementation.</li>
+</ul></div>
+</div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="23.6.2" id="stroke-2362">stRoke 23.6.2<a class="anchor" aria-label="anchor" href="#stroke-2362"></a></h2>
 <div class="section level4">
diff --git a/pkgdown.yml b/pkgdown.yml
index 8ad7734..6cec96e 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -4,7 +4,7 @@ pkgdown_sha: ~
 articles:
   ds2dd: ds2dd.html
   toolbox: toolbox.html
-last_built: 2023-07-03T05:54Z
+last_built: 2023-07-03T10:03Z
 urls:
   reference: https://agdamsbo.github.io/stRoke/reference
   article: https://agdamsbo.github.io/stRoke/articles
diff --git a/reference/age_calc.html b/reference/age_calc.html
index d217fda..da70e1c 100644
--- a/reference/age_calc.html
+++ b/reference/age_calc.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ci_plot.html b/reference/ci_plot.html
index c53c670..f89efdb 100644
--- a/reference/ci_plot.html
+++ b/reference/ci_plot.html
@@ -14,7 +14,7 @@ Title and axis labels can be added to the ggplot afterwards.'><meta property="og
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/color_plot-1.png b/reference/color_plot-1.png
index 37bb4e4..aba60f1 100644
Binary files a/reference/color_plot-1.png and b/reference/color_plot-1.png differ
diff --git a/reference/color_plot.html b/reference/color_plot.html
index 65f9c0e..86256e8 100644
--- a/reference/color_plot.html
+++ b/reference/color_plot.html
@@ -12,7 +12,7 @@ contrast_text."><meta property="og:image" content="https://agdamsbo.github.io/st
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/contrast_text.html b/reference/contrast_text.html
index 609ee92..c92903e 100644
--- a/reference/contrast_text.html
+++ b/reference/contrast_text.html
@@ -12,7 +12,7 @@ background color."><meta property="og:image" content="https://agdamsbo.github.io
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cpr_check.html b/reference/cpr_check.html
index 17a1282..ea01809 100644
--- a/reference/cpr_check.html
+++ b/reference/cpr_check.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cpr_dob.html b/reference/cpr_dob.html
index 8807d98..7fe96c0 100644
--- a/reference/cpr_dob.html
+++ b/reference/cpr_dob.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cpr_female.html b/reference/cpr_female.html
index 14ee965..e05c316 100644
--- a/reference/cpr_female.html
+++ b/reference/cpr_female.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/cprs.html b/reference/cprs.html
index ddee3d1..43f7c79 100644
--- a/reference/cprs.html
+++ b/reference/cprs.html
@@ -12,7 +12,7 @@ for testing purposes."><meta property="og:image" content="https://agdamsbo.githu
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ds2dd.html b/reference/ds2dd.html
index c4ab6a8..4fac55b 100644
--- a/reference/ds2dd.html
+++ b/reference/ds2dd.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -64,7 +64,8 @@
 <span>  form.name <span class="op">=</span> <span class="st">"basis"</span>,</span>
 <span>  field.type <span class="op">=</span> <span class="st">"text"</span>,</span>
 <span>  field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
-<span>  include.column.names <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span>  include.column.names <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span>  metadata <span class="op">=</span> <span class="fu">stRoke</span><span class="fu">::</span><span class="va"><a href="metadata_names.html">metadata_names</a></span></span>
 <span><span class="op">)</span></span></code></pre></div>
     </div>
 
@@ -99,6 +100,11 @@ names.</p></dd>
 <dd><p>Flag to give detailed output including new
 column names for original data set for upload.</p></dd>
 
+
+<dt>metadata</dt>
+<dd><p>Metadata dataframe. Default is the included
+stRoke::metadata_names.</p></dd>
+
 </dl></div>
     <div class="section level2">
     <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
diff --git a/reference/files_filter.html b/reference/files_filter.html
index c39e7e5..986f0b4 100644
--- a/reference/files_filter.html
+++ b/reference/files_filter.html
@@ -12,7 +12,7 @@ provided filter."><meta property="og:image" content="https://agdamsbo.github.io/
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/generic_stroke.html b/reference/generic_stroke.html
index 3179ec6..9ecafb6 100644
--- a/reference/generic_stroke.html
+++ b/reference/generic_stroke.html
@@ -14,7 +14,7 @@ To dos: modify grottaBar and include as own function."><meta property="og:image"
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index.html b/reference/index.html
index 964e3d8..07f39ac 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index_plot.html b/reference/index_plot.html
index c4f4247..01eba88 100644
--- a/reference/index_plot.html
+++ b/reference/index_plot.html
@@ -12,7 +12,7 @@ Includes option to facet."><meta property="og:image" content="https://agdamsbo.g
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/label_select.html b/reference/label_select.html
index 565fe15..ec62b74 100644
--- a/reference/label_select.html
+++ b/reference/label_select.html
@@ -12,7 +12,7 @@ Alternative is to use attributes, eg from library(Hmisc).'><meta property="og:im
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -94,15 +94,15 @@ Alternative is to use attributes, eg from <code><a href="https://hbiostat.org/R/
 <span class="r-in"><span><span class="fu">label_select</span><span class="op">(</span><span class="va">labels_all</span>,<span class="va">vars</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> [[1]]</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> hypertension ~ "Known hypertension"</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55e6096ed180&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55ee1b4bbd00&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> [[2]]</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> diabetes ~ "Known diabetes"</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55e6096ed180&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55ee1b4bbd00&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> [[3]]</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> mrs_1 ~ "One month mRS"</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55e6096ed180&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55ee1b4bbd00&gt;</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-in"><span></span></span>
 <span class="r-in"><span><span class="co">## With gtsummary::tbl_summary()</span></span></span>
diff --git a/reference/metadata_names.html b/reference/metadata_names.html
index 7a1881f..0acbd72 100644
--- a/reference/metadata_names.html
+++ b/reference/metadata_names.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/pase.html b/reference/pase.html
index 23f8996..0ec92d0 100644
--- a/reference/pase.html
+++ b/reference/pase.html
@@ -12,7 +12,7 @@ Sample data labels are in Danish."><meta property="og:image" content="https://ag
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/pase_calc.html b/reference/pase_calc.html
index 5ad6228..dff7658 100644
--- a/reference/pase_calc.html
+++ b/reference/pase_calc.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/print.win_Prob.html b/reference/print.win_Prob.html
index 7dbf7d2..96aa6ec 100644
--- a/reference/print.win_Prob.html
+++ b/reference/print.win_Prob.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/quantile_cut.html b/reference/quantile_cut.html
index 37a6379..f4937bf 100644
--- a/reference/quantile_cut.html
+++ b/reference/quantile_cut.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -120,8 +120,8 @@ as borders in case of y!=NULL.</p></dd>
 <span class="r-in"><span><span class="va">x</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">450</span></span></span>
 <span class="r-in"><span><span class="va">y</span> <span class="op">&lt;-</span> <span class="fl">6</span><span class="op">:</span><span class="fl">750</span></span></span>
 <span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="fu">quantile_cut</span><span class="op">(</span><span class="va">aa</span>,groups<span class="op">=</span><span class="fl">4</span>,detail.list<span class="op">=</span><span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span> <span class="co">## Cuts quartiles</span></span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   [1,245] (245,498] (498,743] (743,999] </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>       501       500       499       500 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>     [1,251]   (251,484]   (484,745] (745,1e+03] </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>         500         500         502         498 </span>
 </code></pre></div>
     </div>
   </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
diff --git a/reference/score.html b/reference/score.html
index c10ca62..0b68f98 100644
--- a/reference/score.html
+++ b/reference/score.html
@@ -12,7 +12,7 @@ five-dimensional cognitive test."><meta property="og:image" content="https://agd
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/source_lines.html b/reference/source_lines.html
index 8680813..3920b4a 100644
--- a/reference/source_lines.html
+++ b/reference/source_lines.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/stRoke-package.html b/reference/stRoke-package.html
index 60a842f..1591d05 100644
--- a/reference/stRoke-package.html
+++ b/reference/stRoke-package.html
@@ -18,7 +18,7 @@ This is an R-toolbox of custom functions for convenient data management and anal
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/talos.html b/reference/talos.html
index 5ec36a0..e6938ec 100644
--- a/reference/talos.html
+++ b/reference/talos.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/win_prob.html b/reference/win_prob.html
index 6a66098..85fbccc 100644
--- a/reference/win_prob.html
+++ b/reference/win_prob.html
@@ -14,7 +14,7 @@ winning with a confidence interval an p-value testing."><meta property="og:image
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/write_ical.html b/reference/write_ical.html
index 0a9f848..952756b 100644
--- a/reference/write_ical.html
+++ b/reference/write_ical.html
@@ -12,7 +12,7 @@ Export as .ics file using calendar::ic_write()."><meta property="og:image" conte
     
     <a class="navbar-brand me-2" href="../index.html">stRoke</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.2</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.6.3</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -171,8 +171,8 @@ a time zone that is recognized by the user's OS.</p></dd>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 2 × 7</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   SUMMARY    DTSTART             DTEND               UID          LOCATION URL  </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span>              <span style="color: #949494; font-style: italic;">&lt;dttm&gt;</span>              <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>    <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> Conference 2020-02-10 <span style="color: #949494;">12:00:00</span> 2020-02-13 <span style="color: #949494;">13:00:00</span> ical-903d43… Confere… http…</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> Lunch      2020-02-11 <span style="color: #949494;">10:00:00</span> 2020-02-11 <span style="color: #949494;">11:00:00</span> ical-a4b883… Confere… http…</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> Conference 2020-02-10 <span style="color: #949494;">12:00:00</span> 2020-02-13 <span style="color: #949494;">13:00:00</span> ical-aeeaab… Confere… http…</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> Lunch      2020-02-11 <span style="color: #949494;">10:00:00</span> 2020-02-11 <span style="color: #949494;">11:00:00</span> ical-f7fe15… Confere… http…</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 1 more variable: DESCRIPTION &lt;chr&gt;</span></span>
 <span class="r-in"><span></span></span>
 </code></pre></div>
diff --git a/search.json b/search.json
index 469e151..37963b3 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"easy-data-set-to-data-base-workflow","dir":"Articles","previous_headings":"","what":"Easy data set to data base workflow","title":"ds2dd","text":"function can used simple tool creating data base metadata file REDCap (called DataDictionary) based given data set file.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-1---load-your-data-set","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 1 - Load your data set","title":"ds2dd","text":"’ll use sample TALOS dataset included package.","code":"data(\"talos\") ds <- talos # As the data set lacks an ID column, one is added ds$id <- seq_len(nrow(ds))"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-2---create-the-datadictionary","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 2 - Create the DataDictionary","title":"ds2dd","text":"Now additional specifications DataDictionary can made manually, can uploaded modified manually graphical user interface web page. function transform column names lower case substitute spaces underscores. output list DataDictionary vector new column names dataset fit meta data.","code":"datadictionary <- ds2dd(ds,record.id = \"id\",include.column.names = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-3---meta-data-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 3 - Meta data upload","title":"ds2dd","text":"Now DataDictionary can exported spreadsheet uploaded can uploaded using REDCapR package (projects “Development” status). Use one two approaches :","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"manual-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow > Step 3 - Meta data upload","what":"Manual upload","title":"ds2dd","text":"","code":"write.csv(datadictionary$DataDictionary,\"datadictionary.csv\")"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"upload-with-redcapr","dir":"Articles","previous_headings":"Easy data set to data base workflow > Step 3 - Meta data upload","what":"Upload with REDCapR","title":"ds2dd","text":"“REDCap R Handbook” written interfacing REDCap R using library(keyring)store credentials chapter 1.1.","code":"REDCapR::redcap_metadata_write(   datadictionary$DataDictionary,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-4---data-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 4 - Data upload","title":"ds2dd","text":"two options available data upload meta data upload: manual REDCapR. latter shown .","code":"# new column names are applied colnames(ds) <- datadictionary$`Column names`  REDCapR::redcap_write(   ds,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"a-toolbox","dir":"Articles","previous_headings":"","what":"A toolbox","title":"Toolbox","text":"toolbox small workshop mix old, worn, well proven tools newcomers. package seen something like . tried collect tools functions packages use regularly addition functions written fill use cases, able find solutions elsewhere. documenting testing package, used OpenAI’s chatgpt gpttools. chatgpt interesting tool, way perfect, helps tedious tasks. gpttools gptstudio interesting implementations R RStudio.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr-intro","dir":"Articles","previous_headings":"A toolbox","what":"CPR manipulations","title":"Toolbox","text":"Note , handled, CPR numbers (social security numbers) handled care considered highly sensitive data. CPR number structured DDMMYY-XXXX, 1st X designating decade birth, last X designate binary gender (biological sex) dependent even/uneven female/male, last digits used modulus calculation verify validity CPR number. Foreigners unidentified persons given temporary CPR numbers including letters. information can found cpr.dk. Note, CPR numbers used examples publicly known non-organic.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"age_calc","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"age_calc()","title":"Toolbox","text":"age_calc() function created learning exercise functions similarly lubridate::time_length().","code":"(age <- age_calc(as.Date(\"1945-10-23\"), as.Date(\"2018-09-30\"))) #> [1] 72.93699 trunc(age) #> [1] 72"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_check","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_check()","title":"Toolbox","text":"Checks validity CPR numbers according modulus 11 rule. Note due limitations possible available CPR numbers, rule apply CPR numbers 2007. Including CPR numbers letters gives warning NA, can checked modulus 11 function. used care, see message.","code":"cpr_check(   c(     \"2310450637\",     \"010190-2000\",     \"010115-4000\",     \"300450-1030\",     \"010150-4021\",     \"010150-4AA1\"   ) ) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> Warning in matrix(as.numeric(unlist(strsplit(cpr_short, \"\"))), nrow = 10): NAs #> introduced by coercion #> [1]  TRUE FALSE FALSE FALSE FALSE    NA"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_dob","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_dob()","title":"Toolbox","text":"Extracts date birth (DOB) CPR number. Accounts decade birth. See earlier.","code":"cpr_dob(c(   \"2310450637\",   \"010190-2000\",   \"010115-4000\",   \"300450-1030\",   \"010150-4021\" )) #> [1] \"23-10-1945\" \"01-01-1990\" \"01-01-2015\" \"30-04-1950\" \"01-01-1950\""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_female","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_female()","title":"Toolbox","text":"Gives logical vector whether female gender last digit CPR.","code":"table(cpr_female(stRoke::cprs[, 1])) #>  #> FALSE  TRUE  #>    98   102"},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"ci_plot","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"ci_plot()","title":"Toolbox","text":"Plots odds ratios 95 % confidence intervals. Performs binary logistic regression outcome factors two (2) levels ordinal logistic regression outcome factors two levels. Mind relevant assumptions. Outputs ggplot element manipulation.","code":"data(talos) talos[, \"mrs_1\"] <- factor(talos[, \"mrs_1\"], ordered = TRUE) ci_plot(   ds = talos,   x = \"rtreat\",   y = \"mrs_1\",   vars = c(\"hypertension\", \"diabetes\") ) #> Waiting for profiling to be done..."},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"generic_stroke","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"generic_stroke()","title":"Toolbox","text":"learning purposes. Uses annonymized data TALOS trial output Table 1 (gtsummary::tbl_summary()), plotting -called grotta-bars based mRS scores (rankinPlot::grottaBar()) ordinal logistic regression model plot (stRoke::ci_plot()).","code":"generic_stroke(stRoke::talos,                \"rtreat\",                \"mrs_6\",                variables = c(\"hypertension\", \"diabetes\", \"civil\")) #> Waiting for profiling to be done... #> $`Table 1` #> <div id=\"stoxlxdalk\" style=\"padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;\"> #>   <style>#stoxlxdalk table { #>   font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; #>   -webkit-font-smoothing: antialiased; #>   -moz-osx-font-smoothing: grayscale; #> } #>  #> #stoxlxdalk thead, #stoxlxdalk tbody, #stoxlxdalk tfoot, #stoxlxdalk tr, #stoxlxdalk td, #stoxlxdalk th { #>   border-style: 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#> } #>  #> #stoxlxdalk .gt_center { #>   text-align: center; #> } #>  #> #stoxlxdalk .gt_right { #>   text-align: right; #>   font-variant-numeric: tabular-nums; #> } #>  #> #stoxlxdalk .gt_font_normal { #>   font-weight: normal; #> } #>  #> #stoxlxdalk .gt_font_bold { #>   font-weight: bold; #> } #>  #> #stoxlxdalk .gt_font_italic { #>   font-style: italic; #> } #>  #> #stoxlxdalk .gt_super { #>   font-size: 65%; #> } #>  #> #stoxlxdalk .gt_footnote_marks { #>   font-size: 75%; #>   vertical-align: 0.4em; #>   position: initial; #> } #>  #> #stoxlxdalk .gt_asterisk { #>   font-size: 100%; #>   vertical-align: 0; #> } #>  #> #stoxlxdalk .gt_indent_1 { #>   text-indent: 5px; #> } #>  #> #stoxlxdalk .gt_indent_2 { #>   text-indent: 10px; #> } #>  #> #stoxlxdalk .gt_indent_3 { #>   text-indent: 15px; #> } #>  #> #stoxlxdalk .gt_indent_4 { #>   text-indent: 20px; #> } #>  #> #stoxlxdalk .gt_indent_5 { #>   text-indent: 25px; #> } #> <\/style> #>   <table class=\"gt_table\" data-quarto-disable-processing=\"false\" data-quarto-bootstrap=\"false\"> #>   <thead> #>      #>     <tr class=\"gt_col_headings\"> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_left\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Characteristic&lt;/strong&gt;\"><strong>Characteristic<\/strong><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Overall&lt;/strong&gt;, N = 200&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Overall<\/strong>, N = 200<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Active&lt;/strong&gt;, N = 79&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Active<\/strong>, N = 79<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Placebo&lt;/strong&gt;, N = 121&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Placebo<\/strong>, N = 121<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>     <\/tr> #>   <\/thead> #>   <tbody class=\"gt_table_body\"> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">hypertension<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">101 (51%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">38 (48%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">63 (52%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">diabetes<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">23 (12%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">9 (11%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">14 (12%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">civil<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\"><\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\"><\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\"><\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">    alone<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">59 (30%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">22 (28%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">37 (31%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">    partner<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">141 (71%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">57 (72%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">84 (69%)<\/td><\/tr> #>   <\/tbody> #>    #>   <tfoot class=\"gt_footnotes\"> #>     <tr> #>       <td class=\"gt_footnote\" colspan=\"4\"><span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span> n (%)<\/td> #>     <\/tr> #>   <\/tfoot> #> <\/table> #> <\/div> #>  #> $`Figure 1` #>  #> $`Figure 2`"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"index_plot","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"index_plot()","title":"Toolbox","text":"Used plotting scores multi dimensional patient test.","code":"index_plot(stRoke::score[score$event == \"A\", ])"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"win_prob","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"win_prob()","title":"Toolbox","text":"win_prob() implementation Tournament Method calculating probability winning suggested Zou et al 2022. authors included spreadsheet supplementary materials. function aims mimic functionality. function also includes print() extension nice printing.","code":"win_prob(   data = stRoke::talos,   response = \"mrs_6\",   group = \"rtreat\",   sample.size = TRUE,   print.tables = TRUE ) #>   Zou et al's winP (doi: 10.1161/STROKEAHA.121.037744)  #>  #> Probability of a random observation in Placebo group  #>       will have a higher response score than a random #>       observation in Active group: #>  #>         winP: 0.400 (0.612, 0.372)      p=0.0125 #> -------------------------------------------- #>  #> The numbers needed to treat (NNT) are: -9 #>  #>  #> -------------------------------------------- #>  #>  With Active/Placebo ratio = 1 and beta = 0.2 #>               the sample size needed is: 238 #>  #>  #> -------------------------------------------- #>  #> Results for the Active group: #>  |mrs_6 | Freq|  prop| overall_rank| rank| win_frac| #>      |:-----|----:|-----:|------------:|----:|--------:| #>      |0     |   14| 0.177|        175.0| 72.5|    0.847| #>      |1     |   29| 0.367|        113.5| 51.0|    0.517| #>      |2     |   22| 0.278|         49.0| 25.5|    0.194| #>      |3     |    9| 0.114|         15.0| 10.0|    0.041| #>      |4     |    3| 0.038|          7.0|  4.0|    0.025| #>      |6     |    2| 0.025|          2.5|  1.5|    0.008| #>  #> Results for the Placebo group: #>  |mrs_6 | Freq|  prop| overall_rank|  rank| win_frac| #>      |:-----|----:|-----:|------------:|-----:|--------:| #>      |0     |   37| 0.306|        175.0| 103.0|    0.911| #>      |1     |   43| 0.355|        113.5|  63.0|    0.639| #>      |2     |   35| 0.289|         49.0|  24.0|    0.316| #>      |3     |    2| 0.017|         15.0|   5.5|    0.120| #>      |4     |    2| 0.017|          7.0|   3.5|    0.044| #>      |6     |    2| 0.017|          2.5|   1.5|    0.013|"},{"path":"https://agdamsbo.github.io/stRoke/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/stRoke/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2023). stRoke: Clinical Stroke Research. https://agdamsbo.github.io/stRoke/, https://github.com/agdamsbo/stRoke.","code":"@Manual{,   title = {stRoke: Clinical Stroke Research},   author = {Andreas Gammelgaard Damsbo},   year = {2023},   note = {https://agdamsbo.github.io/stRoke/, https://github.com/agdamsbo/stRoke}, }"},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"stroke-package-","dir":"","previous_headings":"","what":"Clinical Stroke Research","title":"Clinical Stroke Research","text":"R-toolbox custom functions convenient data management analysis clinical health research teaching. package mainly collected personal use, use beyond encouraged. package migrated functions agdamsbo/daDoctoR-package, new functions added.","code":""},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"contribute","dir":"","previous_headings":"","what":"Contribute","title":"Clinical Stroke Research","text":"package shared GitHub, welcome contribute opening issue pull request.","code":""},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Clinical Stroke Research","text":"package can installed directly CRAN: latest version development can installed GitHub:","code":"install.packages(\"stRoke\") remotes::install_github(\"agdamsbo/stRoke\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate age in years, months, or days — age_calc","title":"Calculate age in years, months, or days — age_calc","text":"Calculate age years, months, days","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate age in years, months, or days — age_calc","text":"","code":"age_calc(dob, enddate = Sys.Date(), units = \"years\", precise = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Calculate age in years, months, or days — age_calc","text":"doi:10.18637/jss.v093.i02","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate age in years, months, or days — age_calc","text":"dob Date birth enddate End date age calculation (default Sys.Date()) units Units age calculation (default \"years\"). Can c(\"days\", \"months\", \"years\") precise Option calculate age precisely (default TRUE)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculate age in years, months, or days — age_calc","text":"numeric vector length 1","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculate age in years, months, or days — age_calc","text":"Becker, J.P. (2020). eeptools: R Package Teaching Learning Ecology Evolutionary Biology. Journal Statistical Software, 93(2), 1-27.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate age in years, months, or days — age_calc","text":"","code":"trunc(age_calc(as.Date(\"1945-10-23\"),as.Date(\"2018-09-30\"))) #> [1] 72"},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Confidence interval plot with point estimate — ci_plot","title":"Confidence interval plot with point estimate — ci_plot","text":"Horizontal forest plot point estimate confidence intervals. Includes dichotomous olr, depending number levels \"x\". Title axis labels can added ggplot afterwards.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Confidence interval plot with point estimate — ci_plot","text":"","code":"ci_plot(   ds,   x = NULL,   y = NULL,   vars = NULL,   dec = 3,   lbls = NULL,   title = NULL,   method = \"auto\" )"},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Confidence interval plot with point estimate — ci_plot","text":"ds main input, either data set logistic model x text string main exposure variable y text string outcome variable vars variables multivariate analysis. dec Decimals labels lbls Labels variable names title Plot title. Can specified later. method Character vector. method regression. Can c(\"auto\", \"model\").","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Confidence interval plot with point estimate — ci_plot","text":"ggplot element","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Confidence interval plot with point estimate — ci_plot","text":"","code":"# Auto plot data(talos) talos[,\"mrs_1\"]<-factor(talos[,\"mrs_1\"],ordered=TRUE) ci_plot(ds = talos, x = \"rtreat\", y = \"mrs_1\",  vars = c(\"hypertension\",\"diabetes\")) #> Waiting for profiling to be done...  ## Model plot # iris$ord<-factor(sample(1:3,size=nrow(iris),replace=TRUE),ordered=TRUE) # lm <- MASS::polr(ord~., data=iris, Hess=TRUE, method=\"logistic\") # ci_plot(ds = lm, method=\"model\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot color examples with contrasting text — color_plot","title":"Plot color examples with contrasting text — color_plot","text":"Plots color examples contrasting text. Parameters passed contrast_text.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot color examples with contrasting text — color_plot","text":"","code":"color_plot(   colors,   labels = TRUE,   borders = NULL,   cex_label = 1,   ncol = NULL,   ... )"},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot color examples with contrasting text — color_plot","text":"colors Vector colors plot labels Show color names. Default TRUE borders Border parameter 'rect()' function. Default NULL cex_label Label size. Default 1. ncol Desired number columns. Default ceiling square root length 'colors' vector provided. ... Parameters ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot color examples with contrasting text — color_plot","text":"base plot","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot color examples with contrasting text — color_plot","text":"","code":"par(bg=NULL) #> named list() colors <- sample(colors(),size = 20) color_plot(colors, method=\"relative\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":null,"dir":"Reference","previous_headings":"","what":"Contrast Text Color — contrast_text","title":"Contrast Text Color — contrast_text","text":"Calculates best contrast text color given background color.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(   background,   light_text = \"white\",   dark_text = \"black\",   threshold = 0.5,   method = \"perceived_2\",   ... )"},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Contrast Text Color — contrast_text","text":"background hex/named color value represents background. light_text hex/named color value represents light text color. dark_text hex/named color value represents dark text color. threshold numeric value 0 1 used determine luminance threshold background color text color. method character string specifies method calculating luminance. Three different methods available: c(\"relative\",\"perceived\",\"perceived_2\") ... parameter overflow. Ignored.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Contrast Text Color — contrast_text","text":"character string contains best contrast text color.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Contrast Text Color — contrast_text","text":"function aids deciding font color print given background. function based example provided teppo: https://stackoverflow.com//66669838/21019325. different methods provided based methods outlined StackOverflow thread: https://stackoverflow.com/questions/596216/formula--determine-perceived-brightness--rgb-color","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(c(\"#F2F2F2\", \"blue\")) #> [1] \"black\" \"white\"  contrast_text(c(\"#F2F2F2\", \"blue\"), method=\"relative\") #> [1] \"black\" \"white\""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":null,"dir":"Reference","previous_headings":"","what":"CPR check — cpr_check","title":"CPR check — cpr_check","text":"Checking validity cpr number. Vectorised.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"CPR check — cpr_check","text":"","code":"cpr_check(cpr)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"CPR check — cpr_check","text":"cpr cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"CPR check — cpr_check","text":"Logical vector cpr validity","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"CPR check — cpr_check","text":"","code":"fsd<-c(\"2310450637\", \"010190-2000\", \"010115-4000\", \"300450-1030\",\"010150-4021\") cpr_check(\"2310450637\") #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1] TRUE cpr_check(fsd) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1]  TRUE FALSE FALSE FALSE FALSE all(cpr_check(fsd)) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1] FALSE"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":null,"dir":"Reference","previous_headings":"","what":"Extracting date of birth from CPR — cpr_dob","title":"Extracting date of birth from CPR — cpr_dob","text":"easy calculation. handle cprs letters (interim cpr)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extracting date of birth from CPR — cpr_dob","text":"","code":"cpr_dob(cpr, format = \"%d-%m-%Y\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extracting date of birth from CPR — cpr_dob","text":"cpr cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column. format character string dob date format. Default \"%d-%m-%Y\".","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extracting date of birth from CPR — cpr_dob","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extracting date of birth from CPR — cpr_dob","text":"","code":"cpr_dob(\"231045-0637\") #> [1] \"23-10-1945\" fsd<-c(\"2310450637\", \"010190-2000\", \"010115-4000\", \"300450-1030\",\"010150-4021\") cpr_dob(fsd) #> [1] \"23-10-1945\" \"01-01-1990\" \"01-01-2015\" \"30-04-1950\" \"01-01-1950\""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine female sex from CPR — cpr_female","title":"Determine female sex from CPR — cpr_female","text":"Just checking last number string equal .","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine female sex from CPR — cpr_female","text":"","code":"cpr_female(cpr)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine female sex from CPR — cpr_female","text":"cpr Vector. cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine female sex from CPR — cpr_female","text":"Logical vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine female sex from CPR — cpr_female","text":"","code":"cpr_female(stRoke::cprs[,1]) #>   [1] FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE FALSE FALSE  TRUE FALSE FALSE #>  [13]  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE  TRUE #>  [25]  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE #>  [37]  TRUE  TRUE FALSE FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE  TRUE  TRUE #>  [49] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE  TRUE  TRUE FALSE FALSE #>  [61] FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE #>  [73]  TRUE FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE  TRUE  TRUE #>  [85]  TRUE  TRUE  TRUE FALSE FALSE FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE #>  [97]  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE  TRUE FALSE  TRUE #> [109]  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE  TRUE  TRUE #> [121]  TRUE  TRUE FALSE  TRUE FALSE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE #> [133] FALSE FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE #> [145]  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE #> [157]  TRUE FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE  TRUE  TRUE #> [169]  TRUE  TRUE FALSE FALSE FALSE  TRUE FALSE FALSE  TRUE  TRUE  TRUE  TRUE #> [181] FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE  TRUE FALSE #> [193]  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE  TRUE"},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame of 200 cpr numbers — cprs","title":"Data frame of 200 cpr numbers — cprs","text":"just repeated sample 8 synthesized cpr-numbers testing purposes.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame of 200 cpr numbers — cprs","text":"","code":"data(cprs)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame of 200 cpr numbers — cprs","text":"data frame 200 rows 1 variable: cpr Mixed format cpr-numbers, characters","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set to data dictionary function — ds2dd","title":"Data set to data dictionary function — ds2dd","text":"Data set data dictionary function","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE )"},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data set to data dictionary function — ds2dd","text":"","code":"talos$id <- seq_len(nrow(talos)) ds2dd(talos, record.id=\"id\",include.column.names=FALSE) #>     field_name form_name section_header field_type  field_label #> 1           id     basis             NA       text           id #> 2       rtreat     basis             NA       text       rtreat #> 3        mrs_1     basis             NA       text        mrs_1 #> 4        mrs_6     basis             NA       text        mrs_6 #> 5 hypertension     basis             NA       text hypertension #> 6     diabetes     basis             NA       text     diabetes #> 7        civil     basis             NA       text        civil #>   select_choices_or_calculations field_note #> 1                             NA         NA #> 2                             NA         NA #> 3                             NA         NA #> 4                             NA         NA #> 5                             NA         NA #> 6                             NA         NA #> 7                             NA         NA #>   text_validation_type_or_show_slider_number text_validation_min #> 1                                         NA                  NA #> 2                                         NA                  NA #> 3                                         NA                  NA #> 4                                         NA                  NA #> 5                                         NA                  NA #> 6                                         NA                  NA #> 7                                         NA                  NA #>   text_validation_max identifier branching_logic required_field #> 1                  NA         NA              NA             NA #> 2                  NA         NA              NA             NA #> 3                  NA         NA              NA             NA #> 4                  NA         NA              NA             NA #> 5                  NA         NA              NA             NA #> 6                  NA         NA              NA             NA #> 7                  NA         NA              NA             NA #>   custom_alignment question_number matrix_group_name matrix_ranking #> 1               NA              NA                NA             NA #> 2               NA              NA                NA             NA #> 3               NA              NA                NA             NA #> 4               NA              NA                NA             NA #> 5               NA              NA                NA             NA #> 6               NA              NA                NA             NA #> 7               NA              NA                NA             NA #>   field_annotation #> 1               NA #> 2               NA #> 3               NA #> 4               NA #> 5               NA #> 6               NA #> 7               NA"},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Filter files in a folder — files_filter","title":"Filter files in a folder — files_filter","text":"function filters files folder based provided filter.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Filter files in a folder — files_filter","text":"","code":"files_filter(folder.path, filter.by, full.names = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Filter files in a folder — files_filter","text":"folder.path character. Path folder filtered filter.character. Filter applied files full.names logical. Whether return full file names ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Filter files in a folder — files_filter","text":"character vector. Filtered files","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Filter files in a folder — files_filter","text":"","code":"# Gives path to files/folders with \"tests\" in the name in the  # working directory files_filter(getwd(),\"tests\") #> character(0)"},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":null,"dir":"Reference","previous_headings":"","what":"Generic stroke study outcome — generic_stroke","title":"Generic stroke study outcome — generic_stroke","text":"Includes table 1, grotta bars ordinal logistic regression plot. Please just use function illustration purposes. dos: modify grottaBar include function.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generic stroke study outcome — generic_stroke","text":"","code":"generic_stroke(df, group, score, strata = NULL, variables = NULL)"},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Generic stroke study outcome — generic_stroke","text":"df Data set data frame group Variable group score Outcome measure variable strata Optional variable stratify variables String variable names include adjusted OLR-analysis","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generic stroke study outcome — generic_stroke","text":"Returns list three elements","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Generic stroke study outcome — generic_stroke","text":"","code":"# generic_stroke(df = stRoke::talos, group = \"rtreat\", score = \"mrs_6\",  # variables = c(\"hypertension\",\"diabetes\",\"civil\"))"},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot multidimensional cognitive test scores — index_plot","title":"Plot multidimensional cognitive test scores — index_plot","text":"Plot index scores five dimensional cognitive testing. Includes option facet.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot multidimensional cognitive test scores — index_plot","text":"","code":"index_plot(   ds,   id = \"id\",   sub_plot = \"_is\",   scores = c(\"_is\", \"_lo\", \"_up\", \"_per\"),   dom_names = c(\"immediate\", \"visuospatial\", \"verbal\", \"attention\", \"delayed\", \"total\"),   facet.by = NULL )"},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot multidimensional cognitive test scores — index_plot","text":"ds complete data frame id colname id column. Base colouring sub_plot main outcome scores variable plot scores variables subset plotting. follow standard naming (changed) dom_names domain names axis naming facet.variable base facet_grid ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot multidimensional cognitive test scores — index_plot","text":"ggplot element","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot multidimensional cognitive test scores — index_plot","text":"","code":"index_plot(stRoke::score[score$event==\"A\",])"},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper function for labels in gtsummary — label_select","title":"Helper function for labels in gtsummary — label_select","text":"Function select labels list label pairs (format: age~\"Age\"). Alternative use attributes, eg library(Hmisc).","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper function for labels in gtsummary — label_select","text":"","code":"label_select(lst, vec)"},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper function for labels in gtsummary — label_select","text":"lst List variables labels (format: age~\"Age\") vec Vector variables subset list","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Helper function for labels in gtsummary — label_select","text":"List labels ordered like vec, formatted like lst","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Helper function for labels in gtsummary — label_select","text":"","code":"vars<-c(\"hypertension\", \"diabetes\", \"mrs_1\") labels_all<-list(rtreat~\"Trial treatment\", civil~\"Cohabitation\", diabetes~\"Known diabetes\",  hypertension~\"Known hypertension\",  mrs_1~\"One month mRS\",  mrs_6~\"Six months mRS\",  '[Intercept]'~\"Intercept\") label_select(labels_all,vars) #> [[1]] #> hypertension ~ \"Known hypertension\" #> <environment: 0x55e6096ed180> #>  #> [[2]] #> diabetes ~ \"Known diabetes\" #> <environment: 0x55e6096ed180> #>  #> [[3]] #> mrs_1 ~ \"One month mRS\" #> <environment: 0x55e6096ed180> #>   ## With gtsummary::tbl_summary() #stRoke::talos[vars] |>  #gtsummary::tbl_summary(label = label_select(labels_all,vars))"},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Vector of REDCap metadata headers — metadata_names","title":"Vector of REDCap metadata headers — metadata_names","text":"Vector REDCap metadata headers","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vector of REDCap metadata headers — metadata_names","text":"","code":"data(metadata_names)"},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Vector of REDCap metadata headers — metadata_names","text":"Vector length 18 REDCap metadata headers: metadata_names characterstrings","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample data of PASE score questionnaire — pase","title":"Data frame with sample data of PASE score questionnaire — pase","text":"Contains non-identifiable organic trial data. Sample data labels Danish.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample data of PASE score questionnaire — pase","text":"","code":"data(pase)"},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample data of PASE score questionnaire — pase","text":"data frame 200 rows 21 variables: sample_pase01 item 01, factor sample_pase01b item 01b, factor sample_pase02 item 02, factor sample_pase02a item 02a, factor sample_pase03 item 03, factor sample_pase03b item 03b, factor sample_pase04 item 04, factor sample_pase04b item 04b, factor sample_pase05 item 05, factor sample_pase05b item 05b, factor sample_pase06 item 06, factor sample_pase06b item 06b, factor sample_pase07 item 07, factor sample_pase08 item 08, factor sample_pase09a item 09a, factor sample_pase09b item 09b, factor sample_pase09c item 09c, factor sample_pase09d item 09d, factor sample_pase10 item 10, factor sample_pase10a item 10a, numeric sample_pase10b item 10b, factor","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":null,"dir":"Reference","previous_headings":"","what":"PASE score calculator — pase_calc","title":"PASE score calculator — pase_calc","text":"Calculates PASE score raw questionnaire data.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"PASE score calculator — pase_calc","text":"","code":"pase_calc(ds, adjust_work = FALSE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"PASE score calculator — pase_calc","text":"ds data set adjust_work flag set whether include 10b type 1. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"PASE score calculator — pase_calc","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"PASE score calculator — pase_calc","text":"Labelling defined questionnaire. 02-06 start 0:3, 02a-06b start 1:4.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"regarding-work-scoring","dir":"Reference","previous_headings":"","what":"Regarding work scoring","title":"PASE score calculator — pase_calc","text":"score calculation manual available PASE questionnaire, types work included. According article Washburn RA. et al (1999) sitting work included item 10 score. differentiation added option set adjust_work exclude item 10b category 1 work (set TRUE).","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"regarding-output","dir":"Reference","previous_headings":"","what":"Regarding output","title":"PASE score calculator — pase_calc","text":"Output includes sub scores well sums, also columns assessing data quality completeness. field filled, score_incompletes return TRUE. measures missing score_missings TRUE. adjust_work==TRUE, 10b filled, score_incompletes set TRUE.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"PASE score calculator — pase_calc","text":"","code":"summary(pase_calc(stRoke::pase)[,13]) #>    Min. 1st Qu.  Median    Mean 3rd Qu.    Max.  #>     0.0    75.0   128.6   138.9   195.9   574.3"},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":null,"dir":"Reference","previous_headings":"","what":"Prints win_prob results — print.win_Prob","title":"Prints win_prob results — print.win_Prob","text":"Prints win_prob results","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Prints win_prob results — print.win_Prob","text":"","code":"# S3 method for win_Prob print(x, ...)"},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Prints win_prob results — print.win_Prob","text":"x win_prob results. ... ignored now","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Prints win_prob results — print.win_Prob","text":"Prints win_prob statistics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":null,"dir":"Reference","previous_headings":"","what":"Easy function for splitting numeric variable in quantiles — quantile_cut","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"Using base/stats functions cut() quantile().","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"","code":"quantile_cut(   x,   groups,   y = NULL,   na.rm = TRUE,   group.names = NULL,   ordered.f = FALSE,   inc.outs = FALSE,   detail.list = FALSE )"},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"x Variable cut. groups Number groups. y alternative vector draw quantile cuts . Limits within x. Default NULL. na.rm Remove NA's. Default TRUE. group.names Names groups split . Default NULL, giving intervals names. ordered.f Set resulting vector ordered. Default FALSE. inc.outs Flag include min(x) max(x) borders case y!=NULL. detail.list flag include details ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"vector list vector details (length 2)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"","code":"aa <- as.numeric(sample(1:1000,2000,replace = TRUE)) x <- 1:450 y <- 6:750 summary(quantile_cut(aa,groups=4,detail.list=FALSE)) ## Cuts quartiles #>   [1,245] (245,498] (498,743] (743,999]  #>       501       500       499       500"},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample data of cognitive testing score — score","title":"Data frame with sample data of cognitive testing score — score","text":"Contains non-identifiable organic trial data five-dimensional cognitive test.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample data of cognitive testing score — score","text":"","code":"data(score)"},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample data of cognitive testing score — score","text":"data frame 20 rows 26 variables: id id event event a_is domain index score b_is domain b index score c_is domain c index score d_is domain d index score e_is domain e index score i_is total index score a_lo domain lower ci b_lo domain b lower ci c_lo domain c lower ci d_lo domain d lower ci e_lo domain e lower ci i_lo total lower ci a_up domain upper ci b_up domain b upper ci c_up domain c upper ci d_up domain d upper ci e_up domain e upper ci i_up total upper ci a_per domain percentile b_per domain b percentile c_per domain c percentile d_per domain d percentile e_per domain e percentile i_per total percentile","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":null,"dir":"Reference","previous_headings":"","what":"Source Lines from a File — source_lines","title":"Source Lines from a File — source_lines","text":"Sources specific lines file","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Source Lines from a File — source_lines","text":"","code":"source_lines(file, lines, ...)"},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Source Lines from a File — source_lines","text":"file character string giving path file sourced. lines numeric vector line numbers sourced. ... Additional arguments passed source.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Source Lines from a File — source_lines","text":"result source.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Source Lines from a File — source_lines","text":"","code":"test_file <- tempfile(fileext = \".R\") writeLines(c(\"# Line 1\", \"2+2\", \"# Line 3\"), test_file) source_lines(test_file, 1:2, echo=TRUE) #>  #> > 2 + 2 #> [1] 4"},{"path":"https://agdamsbo.github.io/stRoke/reference/stRoke-package.html","id":null,"dir":"Reference","previous_headings":"","what":"stRoke: Clinical Stroke Research — stRoke-package","title":"stRoke: Clinical Stroke Research — stRoke-package","text":"R-toolbox custom functions convenient data management analysis clinical health research teaching. package mainly collected personal use, use beyond encouraged. package migrated functions 'agdamsbo/daDoctoR', new functions added. Version follows months year. See NEWS/Changelog release notes. package includes sampled data TALOS trial (Kraglund et al (2018) doi:10.1161/STROKEAHA.117.020067 ). win_prob() function based work Zou et al (2022) doi:10.1161/STROKEAHA.121.037744 . age_calc() function based work Becker (2020) doi:10.18637/jss.v093.i02 .","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/stRoke-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"stRoke: Clinical Stroke Research — stRoke-package","text":"Maintainer: Andreas Gammelgaard Damsbo agdamsbo@clin.au.dk (ORCID)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample of TALOS data — talos","title":"Data frame with sample of TALOS data — talos","text":"Contains non-identifiable subset data TALOS trial.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample of TALOS data — talos","text":"","code":"data(talos)"},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample of TALOS data — talos","text":"data frame 200 rows 6 variables: rtreat Randomisation mrs_1 Modified Rankin scale score follow-mrs_6 Modified Rankin scale score end study hypertension Known hypertension diabetes Known diabetes civil Cohabitation status","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Data frame with sample of TALOS data — talos","text":"doi:10.1161/STROKEAHA.117.020067","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates the probability of winning — win_prob","title":"Calculates the probability of winning — win_prob","text":"Calculates probability winning (winP). referenced article Zou et al (2022) proposes method calculating probability winning confidence interval p-value testing.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates the probability of winning — win_prob","text":"","code":"win_prob(   data,   response = NULL,   group = NULL,   alpha = 0.05,   beta = 0.2,   group.ratio = 1,   sample.size = FALSE,   print.tables = FALSE,   dec = 3 )"},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Calculates the probability of winning — win_prob","text":"doi:10.1161/STROKEAHA.121.037744","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates the probability of winning — win_prob","text":"data data frame containing response group variable. response name response variable. Takes first column empty. group name group variable. Takes second column empty. alpha alpha level hypothesis test. Default 0.05. beta beta level sample size calculation. Default 0.2. group.ratio ratio group sizes. Default 1. sample.size Flag include sample size calculation. Default FALSE. print.tables Flag print cumulative tables. Default FALSE. dec Numeric decimals print. Default 3.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates the probability of winning — win_prob","text":"list containing win_prob statistics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates the probability of winning — win_prob","text":"","code":"win_prob(data=stRoke::talos,response=\"mrs_6\",group=\"rtreat\") #> \t Zou et al's winP (doi: 10.1161/STROKEAHA.121.037744)  #>  #> Probability of a random observation in Placebo group  #>       will have a higher response score than a random #>       observation in Active group: #>  #>   \t   winP: 0.400 (0.612, 0.372)      p=0.0125 #> -------------------------------------------- #>  #> The numbers needed to treat (NNT) are: -9 #>  #>  #>"},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":null,"dir":"Reference","previous_headings":"","what":"Write ical object — write_ical","title":"Write ical object — write_ical","text":"function creates ical file based data frame mixed events. Export .ics file using calendar::ic_write().","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Write ical object — write_ical","text":"","code":"write_ical(   df,   date = \"date\",   date.end = NA,   title = \"title\",   time.start = \"start\",   time.end = \"end\",   place = NA,   place.def = NA,   time.def = \"10:00:00\",   time.dur = 60,   descr = NA,   link = NA,   t.zone = \"CET\" )"},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Write ical object — write_ical","text":"df data frame calendar data date name event date column data frame date.end name end date column data frame title name title column data frame time.start name start time column data frame time.end name end time column data frame place name place column data frame place.def Default location use place NA time.def Default start time use time.start NA time.dur Default duration event minutes, time.end NA descr Name description/notes column . link Name link column, . t.zone character string time zone events. string must time zone recognized user's OS.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Write ical object — write_ical","text":"ical object","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Write ical object — write_ical","text":"","code":"df <- data.frame(   date = c(\"2020-02-10\", \"2020-02-11\"),   date.end = c(\"2020-02-13\",NA),   title = c(\"Conference\", \"Lunch\"),   start = c(\"12:00:00\", NA),   time.end = c(\"13:00:00\", NA),   note = c(\"Hi there\",\"Remember to come\"),   link = c(\"https://icalendar.org\",\"https://agdamsbo.github.io/stRoke/\") )  write_ical(   df,   date = \"date\",   date.end = \"date.end\",   title = \"title\",   time.start = \"start\",   time.end = \"time.end\",   place.def = \"Conference Room\",   descr = \"note\",   link = \"link\" ) #> # A tibble: 2 × 7 #>   SUMMARY    DTSTART             DTEND               UID          LOCATION URL   #>   <chr>      <dttm>              <dttm>              <chr>        <chr>    <chr> #> 1 Conference 2020-02-10 12:00:00 2020-02-13 13:00:00 ical-903d43… Confere… http… #> 2 Lunch      2020-02-11 10:00:00 2020-02-11 11:00:00 ical-a4b883… Confere… http… #> # ℹ 1 more variable: DESCRIPTION <chr>"},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.6.2","text":"NEW: pase_calc() function calculates PASE scores raw questionnaire data. Gives sub scores well returns basic data quality completeness checks. Acknowledges difference scoring manual article Washburn PA. et al. (1999) including sitting work score calculations.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"data-23-6-2","dir":"Changelog","previous_headings":"","what":"Data:","title":"stRoke 23.6.2","text":"NEW: pase sample questionnaire data. Non-identifiable use pase_calc() function.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-6-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.6.1","text":"NEW: ‘color_plot()’ function implements ‘contrast_text()’ much inspired ‘scales::show_col()’. Passes arguments internal ‘contrast_text()’. Tests . Took way longer intended.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"stroke-2341","dir":"Changelog","previous_headings":"","what":"stRoke 23.4.1","title":"stRoke 23.4.1","text":"CRAN release: 2023-04-13","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-4-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.4.1","text":"NEW: ds2dd() creates REDCap data dictionary based data set easy upload. new vignette provided example use. separate vignette added.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-4-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.4.1","text":"newer additions package, functions clearly potential use also outside stroke research. new vector REDCap metadata headers added. Can called data(metadata_names).","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-8","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.8","text":"write_ical() easy use implementation package library(calendar) easy conversion spreadsheets ical object. Export .ics file using calendar::ic_write(). contrast_text() calculates best contrast text color given background color. use graphics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-8","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.8","text":"first update CRAN.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-23-1-8","dir":"Changelog","previous_headings":"","what":"Documentation","title":"stRoke 23.1.8","text":"Badges, lots badges","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"stroke-2317","dir":"Changelog","previous_headings":"","what":"stRoke 23.1.7","title":"stRoke 23.1.7","text":"CRAN release: 2023-01-24","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-7","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.7","text":"version first published CRAN 24.jan.2023. also version first published zenodo.org, corresponding doi: 10.5281/zenodo.7572023.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-7","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.7","text":"redcap_read_tables() removed package now. Looking add back later minimal data acquisition tool.","code":""},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-6","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.6 - failed due to dependencies","text":"win_prop() added implement suggested methods DOI: 10.1161/STROKEAHA.121.037744, implementation “Tournament Methods” also found library(genodds). function based spreadsheet provided authors. print.win_Prop also added printing.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-6","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.6 - failed due to dependencies","text":"23.1.5 failed CRAN due gt_plot(). function dropped. Find as_ggplot() elsewhere. agdamsbo/REDCapRITS added “Additional_repositories”. Included references listed authors.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-4","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.4","text":"plot_olr() deprecated removed. ci_plot() functionality extended include logistic model plotting. age_calc() use vapply() instead sapply() gt_plot() function added plot gt elements ggplots. bstfun. done satisfied layout patchwork.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-4","dir":"Changelog","previous_headings":"","what":"Documentation","title":"stRoke 0.23.1.4","text":"Trying complete flags goodpractice inteRgrate","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-3","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.3","text":"files_filter() added. Simple function get file names path specified filter. updated cpr_dob give warnings format recognised return NAs. ci_plot() updated actually handle binary factors. Uses glm(), lm().","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-3","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.3","text":"test, test tests satisfy codecov , course, ensure higher quality changes comply goodpractices::gp() …probably .","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.2","text":"cpr_dob() now includes format=. minor updates.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.2","text":"Two new vignettes Taking last steps documenting releasing CRAN","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"other-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Other:","title":"stRoke 0.23.1.2","text":"New hex logo","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.1","text":"age_calc() now also outputs numeric vector units=“days”, character vector difftime() .","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.1","text":"Added NEWS.md file track changes package. Added codecov Added tests help gpttools","code":""}]
+[{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"easy-data-set-to-data-base-workflow","dir":"Articles","previous_headings":"","what":"Easy data set to data base workflow","title":"ds2dd","text":"function can used simple tool creating data base metadata file REDCap (called DataDictionary) based given data set file.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-1---load-your-data-set","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 1 - Load your data set","title":"ds2dd","text":"’ll use sample TALOS dataset included package.","code":"data(\"talos\") ds <- talos # As the data set lacks an ID column, one is added ds$id <- seq_len(nrow(ds))"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-2---create-the-datadictionary","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 2 - Create the DataDictionary","title":"ds2dd","text":"Now additional specifications DataDictionary can made manually, can uploaded modified manually graphical user interface web page. function transform column names lower case substitute spaces underscores. output list DataDictionary vector new column names dataset fit meta data.","code":"datadictionary <- ds2dd(ds,record.id = \"id\",include.column.names = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-3---meta-data-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 3 - Meta data upload","title":"ds2dd","text":"Now DataDictionary can exported spreadsheet uploaded can uploaded using REDCapR package (projects “Development” status). Use one two approaches :","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"manual-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow > Step 3 - Meta data upload","what":"Manual upload","title":"ds2dd","text":"","code":"write.csv(datadictionary$DataDictionary,\"datadictionary.csv\")"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"upload-with-redcapr","dir":"Articles","previous_headings":"Easy data set to data base workflow > Step 3 - Meta data upload","what":"Upload with REDCapR","title":"ds2dd","text":"“REDCap R Handbook” written interfacing REDCap R using library(keyring)store credentials chapter 1.1.","code":"REDCapR::redcap_metadata_write(   datadictionary$DataDictionary,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/stRoke/articles/ds2dd.html","id":"step-4---data-upload","dir":"Articles","previous_headings":"Easy data set to data base workflow","what":"Step 4 - Data upload","title":"ds2dd","text":"two options available data upload meta data upload: manual REDCapR. latter shown .","code":"# new column names are applied colnames(ds) <- datadictionary$`Column names`  REDCapR::redcap_write(   ds,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"a-toolbox","dir":"Articles","previous_headings":"","what":"A toolbox","title":"Toolbox","text":"toolbox small workshop mix old, worn, well proven tools newcomers. package seen something like . tried collect tools functions packages use regularly addition functions written fill use cases, able find solutions elsewhere. documenting testing package, used OpenAI’s chatgpt gpttools. chatgpt interesting tool, way perfect, helps tedious tasks. gpttools gptstudio interesting implementations R RStudio.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr-intro","dir":"Articles","previous_headings":"A toolbox","what":"CPR manipulations","title":"Toolbox","text":"Note , handled, CPR numbers (social security numbers) handled care considered highly sensitive data. CPR number structured DDMMYY-XXXX, 1st X designating decade birth, last X designate binary gender (biological sex) dependent even/uneven female/male, last digits used modulus calculation verify validity CPR number. Foreigners unidentified persons given temporary CPR numbers including letters. information can found cpr.dk. Note, CPR numbers used examples publicly known non-organic.","code":""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"age_calc","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"age_calc()","title":"Toolbox","text":"age_calc() function created learning exercise functions similarly lubridate::time_length().","code":"(age <- age_calc(as.Date(\"1945-10-23\"), as.Date(\"2018-09-30\"))) #> [1] 72.93699 trunc(age) #> [1] 72"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_check","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_check()","title":"Toolbox","text":"Checks validity CPR numbers according modulus 11 rule. Note due limitations possible available CPR numbers, rule apply CPR numbers 2007. Including CPR numbers letters gives warning NA, can checked modulus 11 function. used care, see message.","code":"cpr_check(   c(     \"2310450637\",     \"010190-2000\",     \"010115-4000\",     \"300450-1030\",     \"010150-4021\",     \"010150-4AA1\"   ) ) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> Warning in matrix(as.numeric(unlist(strsplit(cpr_short, \"\"))), nrow = 10): NAs #> introduced by coercion #> [1]  TRUE FALSE FALSE FALSE FALSE    NA"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_dob","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_dob()","title":"Toolbox","text":"Extracts date birth (DOB) CPR number. Accounts decade birth. See earlier.","code":"cpr_dob(c(   \"2310450637\",   \"010190-2000\",   \"010115-4000\",   \"300450-1030\",   \"010150-4021\" )) #> [1] \"23-10-1945\" \"01-01-1990\" \"01-01-2015\" \"30-04-1950\" \"01-01-1950\""},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"cpr_female","dir":"Articles","previous_headings":"A toolbox > CPR manipulations","what":"cpr_female()","title":"Toolbox","text":"Gives logical vector whether female gender last digit CPR.","code":"table(cpr_female(stRoke::cprs[, 1])) #>  #> FALSE  TRUE  #>    98   102"},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"ci_plot","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"ci_plot()","title":"Toolbox","text":"Plots odds ratios 95 % confidence intervals. Performs binary logistic regression outcome factors two (2) levels ordinal logistic regression outcome factors two levels. Mind relevant assumptions. Outputs ggplot element manipulation.","code":"data(talos) talos[, \"mrs_1\"] <- factor(talos[, \"mrs_1\"], ordered = TRUE) ci_plot(   ds = talos,   x = \"rtreat\",   y = \"mrs_1\",   vars = c(\"hypertension\", \"diabetes\") ) #> Waiting for profiling to be done..."},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"generic_stroke","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"generic_stroke()","title":"Toolbox","text":"learning purposes. Uses annonymized data TALOS trial output Table 1 (gtsummary::tbl_summary()), plotting -called grotta-bars based mRS scores (rankinPlot::grottaBar()) ordinal logistic regression model plot (stRoke::ci_plot()).","code":"generic_stroke(stRoke::talos,                \"rtreat\",                \"mrs_6\",                variables = c(\"hypertension\", \"diabetes\", \"civil\")) #> Waiting for profiling to be done... #> $`Table 1` #> <div id=\"bttbarpkzh\" style=\"padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;\"> #>   <style>#bttbarpkzh table { #>   font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; #>   -webkit-font-smoothing: antialiased; #>   -moz-osx-font-smoothing: grayscale; #> } #>  #> #bttbarpkzh thead, #bttbarpkzh tbody, #bttbarpkzh tfoot, #bttbarpkzh tr, #bttbarpkzh td, #bttbarpkzh th { #>   border-style: 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#> } #>  #> #bttbarpkzh .gt_center { #>   text-align: center; #> } #>  #> #bttbarpkzh .gt_right { #>   text-align: right; #>   font-variant-numeric: tabular-nums; #> } #>  #> #bttbarpkzh .gt_font_normal { #>   font-weight: normal; #> } #>  #> #bttbarpkzh .gt_font_bold { #>   font-weight: bold; #> } #>  #> #bttbarpkzh .gt_font_italic { #>   font-style: italic; #> } #>  #> #bttbarpkzh .gt_super { #>   font-size: 65%; #> } #>  #> #bttbarpkzh .gt_footnote_marks { #>   font-size: 75%; #>   vertical-align: 0.4em; #>   position: initial; #> } #>  #> #bttbarpkzh .gt_asterisk { #>   font-size: 100%; #>   vertical-align: 0; #> } #>  #> #bttbarpkzh .gt_indent_1 { #>   text-indent: 5px; #> } #>  #> #bttbarpkzh .gt_indent_2 { #>   text-indent: 10px; #> } #>  #> #bttbarpkzh .gt_indent_3 { #>   text-indent: 15px; #> } #>  #> #bttbarpkzh .gt_indent_4 { #>   text-indent: 20px; #> } #>  #> #bttbarpkzh .gt_indent_5 { #>   text-indent: 25px; #> } #> <\/style> #>   <table class=\"gt_table\" data-quarto-disable-processing=\"false\" data-quarto-bootstrap=\"false\"> #>   <thead> #>      #>     <tr class=\"gt_col_headings\"> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_left\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Characteristic&lt;/strong&gt;\"><strong>Characteristic<\/strong><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Overall&lt;/strong&gt;, N = 200&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Overall<\/strong>, N = 200<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Active&lt;/strong&gt;, N = 79&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Active<\/strong>, N = 79<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>       <th class=\"gt_col_heading gt_columns_bottom_border gt_center\" rowspan=\"1\" colspan=\"1\" scope=\"col\" id=\"&lt;strong&gt;Placebo&lt;/strong&gt;, N = 121&lt;span class=&quot;gt_footnote_marks&quot; style=&quot;white-space:nowrap;font-style:italic;font-weight:normal;&quot;&gt;&lt;sup&gt;1&lt;/sup&gt;&lt;/span&gt;\"><strong>Placebo<\/strong>, N = 121<span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span><\/th> #>     <\/tr> #>   <\/thead> #>   <tbody class=\"gt_table_body\"> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">hypertension<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">101 (51%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">38 (48%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">63 (52%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">diabetes<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">23 (12%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">9 (11%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">14 (12%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">civil<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\"><\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\"><\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\"><\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">    alone<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">59 (30%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">22 (28%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">37 (31%)<\/td><\/tr> #>     <tr><td headers=\"label\" class=\"gt_row gt_left\">    partner<\/td> #> <td headers=\"stat_0\" class=\"gt_row gt_center\">141 (71%)<\/td> #> <td headers=\"stat_1\" class=\"gt_row gt_center\">57 (72%)<\/td> #> <td headers=\"stat_2\" class=\"gt_row gt_center\">84 (69%)<\/td><\/tr> #>   <\/tbody> #>    #>   <tfoot class=\"gt_footnotes\"> #>     <tr> #>       <td class=\"gt_footnote\" colspan=\"4\"><span class=\"gt_footnote_marks\" style=\"white-space:nowrap;font-style:italic;font-weight:normal;\"><sup>1<\/sup><\/span> n (%)<\/td> #>     <\/tr> #>   <\/tfoot> #> <\/table> #> <\/div> #>  #> $`Figure 1` #>  #> $`Figure 2`"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"index_plot","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"index_plot()","title":"Toolbox","text":"Used plotting scores multi dimensional patient test.","code":"index_plot(stRoke::score[score$event == \"A\", ])"},{"path":"https://agdamsbo.github.io/stRoke/articles/toolbox.html","id":"win_prob","dir":"Articles","previous_headings":"A toolbox > Plotting","what":"win_prob()","title":"Toolbox","text":"win_prob() implementation Tournament Method calculating probability winning suggested Zou et al 2022. authors included spreadsheet supplementary materials. function aims mimic functionality. function also includes print() extension nice printing.","code":"win_prob(   data = stRoke::talos,   response = \"mrs_6\",   group = \"rtreat\",   sample.size = TRUE,   print.tables = TRUE ) #>   Zou et al's winP (doi: 10.1161/STROKEAHA.121.037744)  #>  #> Probability of a random observation in Placebo group  #>       will have a higher response score than a random #>       observation in Active group: #>  #>         winP: 0.400 (0.612, 0.372)      p=0.0125 #> -------------------------------------------- #>  #> The numbers needed to treat (NNT) are: -9 #>  #>  #> -------------------------------------------- #>  #>  With Active/Placebo ratio = 1 and beta = 0.2 #>               the sample size needed is: 238 #>  #>  #> -------------------------------------------- #>  #> Results for the Active group: #>  |mrs_6 | Freq|  prop| overall_rank| rank| win_frac| #>      |:-----|----:|-----:|------------:|----:|--------:| #>      |0     |   14| 0.177|        175.0| 72.5|    0.847| #>      |1     |   29| 0.367|        113.5| 51.0|    0.517| #>      |2     |   22| 0.278|         49.0| 25.5|    0.194| #>      |3     |    9| 0.114|         15.0| 10.0|    0.041| #>      |4     |    3| 0.038|          7.0|  4.0|    0.025| #>      |6     |    2| 0.025|          2.5|  1.5|    0.008| #>  #> Results for the Placebo group: #>  |mrs_6 | Freq|  prop| overall_rank|  rank| win_frac| #>      |:-----|----:|-----:|------------:|-----:|--------:| #>      |0     |   37| 0.306|        175.0| 103.0|    0.911| #>      |1     |   43| 0.355|        113.5|  63.0|    0.639| #>      |2     |   35| 0.289|         49.0|  24.0|    0.316| #>      |3     |    2| 0.017|         15.0|   5.5|    0.120| #>      |4     |    2| 0.017|          7.0|   3.5|    0.044| #>      |6     |    2| 0.017|          2.5|   1.5|    0.013|"},{"path":"https://agdamsbo.github.io/stRoke/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer.","code":""},{"path":"https://agdamsbo.github.io/stRoke/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo (2023). stRoke: Clinical Stroke Research. https://agdamsbo.github.io/stRoke/, https://github.com/agdamsbo/stRoke.","code":"@Manual{,   title = {stRoke: Clinical Stroke Research},   author = {Andreas Gammelgaard Damsbo},   year = {2023},   note = {https://agdamsbo.github.io/stRoke/, https://github.com/agdamsbo/stRoke}, }"},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"stroke-package-","dir":"","previous_headings":"","what":"Clinical Stroke Research","title":"Clinical Stroke Research","text":"R-toolbox custom functions convenient data management analysis clinical health research teaching. package mainly collected personal use, use beyond encouraged. package migrated functions agdamsbo/daDoctoR-package, new functions added.","code":""},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"contribute","dir":"","previous_headings":"","what":"Contribute","title":"Clinical Stroke Research","text":"package shared GitHub, welcome contribute opening issue pull request.","code":""},{"path":"https://agdamsbo.github.io/stRoke/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"Clinical Stroke Research","text":"package can installed directly CRAN: latest version development can installed GitHub:","code":"install.packages(\"stRoke\") remotes::install_github(\"agdamsbo/stRoke\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculate age in years, months, or days — age_calc","title":"Calculate age in years, months, or days — age_calc","text":"Calculate age years, months, days","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculate age in years, months, or days — age_calc","text":"","code":"age_calc(dob, enddate = Sys.Date(), units = \"years\", precise = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Calculate age in years, months, or days — age_calc","text":"doi:10.18637/jss.v093.i02","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculate age in years, months, or days — age_calc","text":"dob Date birth enddate End date age calculation (default Sys.Date()) units Units age calculation (default \"years\"). Can c(\"days\", \"months\", \"years\") precise Option calculate age precisely (default TRUE)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculate age in years, months, or days — age_calc","text":"numeric vector length 1","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"references","dir":"Reference","previous_headings":"","what":"References","title":"Calculate age in years, months, or days — age_calc","text":"Becker, J.P. (2020). eeptools: R Package Teaching Learning Ecology Evolutionary Biology. Journal Statistical Software, 93(2), 1-27.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/age_calc.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculate age in years, months, or days — age_calc","text":"","code":"trunc(age_calc(as.Date(\"1945-10-23\"),as.Date(\"2018-09-30\"))) #> [1] 72"},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Confidence interval plot with point estimate — ci_plot","title":"Confidence interval plot with point estimate — ci_plot","text":"Horizontal forest plot point estimate confidence intervals. Includes dichotomous olr, depending number levels \"x\". Title axis labels can added ggplot afterwards.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Confidence interval plot with point estimate — ci_plot","text":"","code":"ci_plot(   ds,   x = NULL,   y = NULL,   vars = NULL,   dec = 3,   lbls = NULL,   title = NULL,   method = \"auto\" )"},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Confidence interval plot with point estimate — ci_plot","text":"ds main input, either data set logistic model x text string main exposure variable y text string outcome variable vars variables multivariate analysis. dec Decimals labels lbls Labels variable names title Plot title. Can specified later. method Character vector. method regression. Can c(\"auto\", \"model\").","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Confidence interval plot with point estimate — ci_plot","text":"ggplot element","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ci_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Confidence interval plot with point estimate — ci_plot","text":"","code":"# Auto plot data(talos) talos[,\"mrs_1\"]<-factor(talos[,\"mrs_1\"],ordered=TRUE) ci_plot(ds = talos, x = \"rtreat\", y = \"mrs_1\",  vars = c(\"hypertension\",\"diabetes\")) #> Waiting for profiling to be done...  ## Model plot # iris$ord<-factor(sample(1:3,size=nrow(iris),replace=TRUE),ordered=TRUE) # lm <- MASS::polr(ord~., data=iris, Hess=TRUE, method=\"logistic\") # ci_plot(ds = lm, method=\"model\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot color examples with contrasting text — color_plot","title":"Plot color examples with contrasting text — color_plot","text":"Plots color examples contrasting text. Parameters passed contrast_text.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot color examples with contrasting text — color_plot","text":"","code":"color_plot(   colors,   labels = TRUE,   borders = NULL,   cex_label = 1,   ncol = NULL,   ... )"},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot color examples with contrasting text — color_plot","text":"colors Vector colors plot labels Show color names. Default TRUE borders Border parameter 'rect()' function. Default NULL cex_label Label size. Default 1. ncol Desired number columns. Default ceiling square root length 'colors' vector provided. ... Parameters ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot color examples with contrasting text — color_plot","text":"base plot","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/color_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot color examples with contrasting text — color_plot","text":"","code":"par(bg=NULL) #> named list() colors <- sample(colors(),size = 20) color_plot(colors, method=\"relative\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":null,"dir":"Reference","previous_headings":"","what":"Contrast Text Color — contrast_text","title":"Contrast Text Color — contrast_text","text":"Calculates best contrast text color given background color.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(   background,   light_text = \"white\",   dark_text = \"black\",   threshold = 0.5,   method = \"perceived_2\",   ... )"},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Contrast Text Color — contrast_text","text":"background hex/named color value represents background. light_text hex/named color value represents light text color. dark_text hex/named color value represents dark text color. threshold numeric value 0 1 used determine luminance threshold background color text color. method character string specifies method calculating luminance. Three different methods available: c(\"relative\",\"perceived\",\"perceived_2\") ... parameter overflow. Ignored.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Contrast Text Color — contrast_text","text":"character string contains best contrast text color.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Contrast Text Color — contrast_text","text":"function aids deciding font color print given background. function based example provided teppo: https://stackoverflow.com//66669838/21019325. different methods provided based methods outlined StackOverflow thread: https://stackoverflow.com/questions/596216/formula--determine-perceived-brightness--rgb-color","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/contrast_text.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Contrast Text Color — contrast_text","text":"","code":"contrast_text(c(\"#F2F2F2\", \"blue\")) #> [1] \"black\" \"white\"  contrast_text(c(\"#F2F2F2\", \"blue\"), method=\"relative\") #> [1] \"black\" \"white\""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":null,"dir":"Reference","previous_headings":"","what":"CPR check — cpr_check","title":"CPR check — cpr_check","text":"Checking validity cpr number. Vectorised.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"CPR check — cpr_check","text":"","code":"cpr_check(cpr)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"CPR check — cpr_check","text":"cpr cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"CPR check — cpr_check","text":"Logical vector cpr validity","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_check.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"CPR check — cpr_check","text":"","code":"fsd<-c(\"2310450637\", \"010190-2000\", \"010115-4000\", \"300450-1030\",\"010150-4021\") cpr_check(\"2310450637\") #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1] TRUE cpr_check(fsd) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1]  TRUE FALSE FALSE FALSE FALSE all(cpr_check(fsd)) #> OBS: as per 2007 not all valid CPR numbers apply to modulus 11 rule. #>      #> See the vignette 'Toolbox' #> [1] FALSE"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":null,"dir":"Reference","previous_headings":"","what":"Extracting date of birth from CPR — cpr_dob","title":"Extracting date of birth from CPR — cpr_dob","text":"easy calculation. handle cprs letters (interim cpr)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extracting date of birth from CPR — cpr_dob","text":"","code":"cpr_dob(cpr, format = \"%d-%m-%Y\")"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extracting date of birth from CPR — cpr_dob","text":"cpr cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column. format character string dob date format. Default \"%d-%m-%Y\".","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extracting date of birth from CPR — cpr_dob","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_dob.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extracting date of birth from CPR — cpr_dob","text":"","code":"cpr_dob(\"231045-0637\") #> [1] \"23-10-1945\" fsd<-c(\"2310450637\", \"010190-2000\", \"010115-4000\", \"300450-1030\",\"010150-4021\") cpr_dob(fsd) #> [1] \"23-10-1945\" \"01-01-1990\" \"01-01-2015\" \"30-04-1950\" \"01-01-1950\""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":null,"dir":"Reference","previous_headings":"","what":"Determine female sex from CPR — cpr_female","title":"Determine female sex from CPR — cpr_female","text":"Just checking last number string equal .","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Determine female sex from CPR — cpr_female","text":"","code":"cpr_female(cpr)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Determine female sex from CPR — cpr_female","text":"cpr Vector. cpr-numbers ddmmyy\"-.\"xxxx ddmmyyxxxx. Also mixed formatting. Vector data frame column.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Determine female sex from CPR — cpr_female","text":"Logical vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cpr_female.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Determine female sex from CPR — cpr_female","text":"","code":"cpr_female(stRoke::cprs[,1]) #>   [1] FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE FALSE FALSE  TRUE FALSE FALSE #>  [13]  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE  TRUE #>  [25]  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE FALSE FALSE #>  [37]  TRUE  TRUE FALSE FALSE FALSE FALSE  TRUE  TRUE FALSE FALSE  TRUE  TRUE #>  [49] FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE  TRUE  TRUE FALSE FALSE #>  [61] FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE #>  [73]  TRUE FALSE  TRUE FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE  TRUE  TRUE #>  [85]  TRUE  TRUE  TRUE FALSE FALSE FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE #>  [97]  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE  TRUE  TRUE FALSE  TRUE #> [109]  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE  TRUE  TRUE #> [121]  TRUE  TRUE FALSE  TRUE FALSE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE #> [133] FALSE FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE #> [145]  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE #> [157]  TRUE FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE  TRUE  TRUE #> [169]  TRUE  TRUE FALSE FALSE FALSE  TRUE FALSE FALSE  TRUE  TRUE  TRUE  TRUE #> [181] FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE  TRUE FALSE FALSE  TRUE FALSE #> [193]  TRUE  TRUE  TRUE  TRUE FALSE FALSE FALSE  TRUE"},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame of 200 cpr numbers — cprs","title":"Data frame of 200 cpr numbers — cprs","text":"just repeated sample 8 synthesized cpr-numbers testing purposes.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame of 200 cpr numbers — cprs","text":"","code":"data(cprs)"},{"path":"https://agdamsbo.github.io/stRoke/reference/cprs.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame of 200 cpr numbers — cprs","text":"data frame 200 rows 1 variable: cpr Mixed format cpr-numbers, characters","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set to data dictionary function — ds2dd","title":"Data set to data dictionary function — ds2dd","text":"Data set data dictionary function","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE,   metadata = stRoke::metadata_names )"},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload. metadata Metadata dataframe. Default included stRoke::metadata_names.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data set to data dictionary function — ds2dd","text":"","code":"talos$id <- seq_len(nrow(talos)) ds2dd(talos, record.id=\"id\",include.column.names=FALSE) #>     field_name form_name section_header field_type  field_label #> 1           id     basis             NA       text           id #> 2       rtreat     basis             NA       text       rtreat #> 3        mrs_1     basis             NA       text        mrs_1 #> 4        mrs_6     basis             NA       text        mrs_6 #> 5 hypertension     basis             NA       text hypertension #> 6     diabetes     basis             NA       text     diabetes #> 7        civil     basis             NA       text        civil #>   select_choices_or_calculations field_note #> 1                             NA         NA #> 2                             NA         NA #> 3                             NA         NA #> 4                             NA         NA #> 5                             NA         NA #> 6                             NA         NA #> 7                             NA         NA #>   text_validation_type_or_show_slider_number text_validation_min #> 1                                         NA                  NA #> 2                                         NA                  NA #> 3                                         NA                  NA #> 4                                         NA                  NA #> 5                                         NA                  NA #> 6                                         NA                  NA #> 7                                         NA                  NA #>   text_validation_max identifier branching_logic required_field #> 1                  NA         NA              NA             NA #> 2                  NA         NA              NA             NA #> 3                  NA         NA              NA             NA #> 4                  NA         NA              NA             NA #> 5                  NA         NA              NA             NA #> 6                  NA         NA              NA             NA #> 7                  NA         NA              NA             NA #>   custom_alignment question_number matrix_group_name matrix_ranking #> 1               NA              NA                NA             NA #> 2               NA              NA                NA             NA #> 3               NA              NA                NA             NA #> 4               NA              NA                NA             NA #> 5               NA              NA                NA             NA #> 6               NA              NA                NA             NA #> 7               NA              NA                NA             NA #>   field_annotation #> 1               NA #> 2               NA #> 3               NA #> 4               NA #> 5               NA #> 6               NA #> 7               NA"},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Filter files in a folder — files_filter","title":"Filter files in a folder — files_filter","text":"function filters files folder based provided filter.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Filter files in a folder — files_filter","text":"","code":"files_filter(folder.path, filter.by, full.names = TRUE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Filter files in a folder — files_filter","text":"folder.path character. Path folder filtered filter.character. Filter applied files full.names logical. Whether return full file names ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Filter files in a folder — files_filter","text":"character vector. Filtered files","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/files_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Filter files in a folder — files_filter","text":"","code":"# Gives path to files/folders with \"tests\" in the name in the  # working directory files_filter(getwd(),\"tests\") #> character(0)"},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":null,"dir":"Reference","previous_headings":"","what":"Generic stroke study outcome — generic_stroke","title":"Generic stroke study outcome — generic_stroke","text":"Includes table 1, grotta bars ordinal logistic regression plot. Please just use function illustration purposes. dos: modify grottaBar include function.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Generic stroke study outcome — generic_stroke","text":"","code":"generic_stroke(df, group, score, strata = NULL, variables = NULL)"},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Generic stroke study outcome — generic_stroke","text":"df Data set data frame group Variable group score Outcome measure variable strata Optional variable stratify variables String variable names include adjusted OLR-analysis","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Generic stroke study outcome — generic_stroke","text":"Returns list three elements","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/generic_stroke.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Generic stroke study outcome — generic_stroke","text":"","code":"# generic_stroke(df = stRoke::talos, group = \"rtreat\", score = \"mrs_6\",  # variables = c(\"hypertension\",\"diabetes\",\"civil\"))"},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":null,"dir":"Reference","previous_headings":"","what":"Plot multidimensional cognitive test scores — index_plot","title":"Plot multidimensional cognitive test scores — index_plot","text":"Plot index scores five dimensional cognitive testing. Includes option facet.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Plot multidimensional cognitive test scores — index_plot","text":"","code":"index_plot(   ds,   id = \"id\",   sub_plot = \"_is\",   scores = c(\"_is\", \"_lo\", \"_up\", \"_per\"),   dom_names = c(\"immediate\", \"visuospatial\", \"verbal\", \"attention\", \"delayed\", \"total\"),   facet.by = NULL )"},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Plot multidimensional cognitive test scores — index_plot","text":"ds complete data frame id colname id column. Base colouring sub_plot main outcome scores variable plot scores variables subset plotting. follow standard naming (changed) dom_names domain names axis naming facet.variable base facet_grid ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Plot multidimensional cognitive test scores — index_plot","text":"ggplot element","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/index_plot.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Plot multidimensional cognitive test scores — index_plot","text":"","code":"index_plot(stRoke::score[score$event==\"A\",])"},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper function for labels in gtsummary — label_select","title":"Helper function for labels in gtsummary — label_select","text":"Function select labels list label pairs (format: age~\"Age\"). Alternative use attributes, eg library(Hmisc).","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper function for labels in gtsummary — label_select","text":"","code":"label_select(lst, vec)"},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper function for labels in gtsummary — label_select","text":"lst List variables labels (format: age~\"Age\") vec Vector variables subset list","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Helper function for labels in gtsummary — label_select","text":"List labels ordered like vec, formatted like lst","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/label_select.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Helper function for labels in gtsummary — label_select","text":"","code":"vars<-c(\"hypertension\", \"diabetes\", \"mrs_1\") labels_all<-list(rtreat~\"Trial treatment\", civil~\"Cohabitation\", diabetes~\"Known diabetes\",  hypertension~\"Known hypertension\",  mrs_1~\"One month mRS\",  mrs_6~\"Six months mRS\",  '[Intercept]'~\"Intercept\") label_select(labels_all,vars) #> [[1]] #> hypertension ~ \"Known hypertension\" #> <environment: 0x55ee1b4bbd00> #>  #> [[2]] #> diabetes ~ \"Known diabetes\" #> <environment: 0x55ee1b4bbd00> #>  #> [[3]] #> mrs_1 ~ \"One month mRS\" #> <environment: 0x55ee1b4bbd00> #>   ## With gtsummary::tbl_summary() #stRoke::talos[vars] |>  #gtsummary::tbl_summary(label = label_select(labels_all,vars))"},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":null,"dir":"Reference","previous_headings":"","what":"Vector of REDCap metadata headers — metadata_names","title":"Vector of REDCap metadata headers — metadata_names","text":"Vector REDCap metadata headers","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Vector of REDCap metadata headers — metadata_names","text":"","code":"data(metadata_names)"},{"path":"https://agdamsbo.github.io/stRoke/reference/metadata_names.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Vector of REDCap metadata headers — metadata_names","text":"Vector length 18 REDCap metadata headers: metadata_names characterstrings","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample data of PASE score questionnaire — pase","title":"Data frame with sample data of PASE score questionnaire — pase","text":"Contains non-identifiable organic trial data. Sample data labels Danish.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample data of PASE score questionnaire — pase","text":"","code":"data(pase)"},{"path":"https://agdamsbo.github.io/stRoke/reference/pase.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample data of PASE score questionnaire — pase","text":"data frame 200 rows 21 variables: sample_pase01 item 01, factor sample_pase01b item 01b, factor sample_pase02 item 02, factor sample_pase02a item 02a, factor sample_pase03 item 03, factor sample_pase03b item 03b, factor sample_pase04 item 04, factor sample_pase04b item 04b, factor sample_pase05 item 05, factor sample_pase05b item 05b, factor sample_pase06 item 06, factor sample_pase06b item 06b, factor sample_pase07 item 07, factor sample_pase08 item 08, factor sample_pase09a item 09a, factor sample_pase09b item 09b, factor sample_pase09c item 09c, factor sample_pase09d item 09d, factor sample_pase10 item 10, factor sample_pase10a item 10a, numeric sample_pase10b item 10b, factor","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":null,"dir":"Reference","previous_headings":"","what":"PASE score calculator — pase_calc","title":"PASE score calculator — pase_calc","text":"Calculates PASE score raw questionnaire data.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"PASE score calculator — pase_calc","text":"","code":"pase_calc(ds, adjust_work = FALSE)"},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"PASE score calculator — pase_calc","text":"ds data set adjust_work flag set whether include 10b type 1. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"PASE score calculator — pase_calc","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"PASE score calculator — pase_calc","text":"Labelling defined questionnaire. 02-06 start 0:3, 02a-06b start 1:4.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"regarding-work-scoring","dir":"Reference","previous_headings":"","what":"Regarding work scoring","title":"PASE score calculator — pase_calc","text":"score calculation manual available PASE questionnaire, types work included. According article Washburn RA. et al (1999) sitting work included item 10 score. differentiation added option set adjust_work exclude item 10b category 1 work (set TRUE).","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"regarding-output","dir":"Reference","previous_headings":"","what":"Regarding output","title":"PASE score calculator — pase_calc","text":"Output includes sub scores well sums, also columns assessing data quality completeness. field filled, score_incompletes return TRUE. measures missing score_missings TRUE. adjust_work==TRUE, 10b filled, score_incompletes set TRUE.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/pase_calc.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"PASE score calculator — pase_calc","text":"","code":"summary(pase_calc(stRoke::pase)[,13]) #>    Min. 1st Qu.  Median    Mean 3rd Qu.    Max.  #>     0.0    75.0   128.6   138.9   195.9   574.3"},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":null,"dir":"Reference","previous_headings":"","what":"Prints win_prob results — print.win_Prob","title":"Prints win_prob results — print.win_Prob","text":"Prints win_prob results","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Prints win_prob results — print.win_Prob","text":"","code":"# S3 method for win_Prob print(x, ...)"},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Prints win_prob results — print.win_Prob","text":"x win_prob results. ... ignored now","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/print.win_Prob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Prints win_prob results — print.win_Prob","text":"Prints win_prob statistics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":null,"dir":"Reference","previous_headings":"","what":"Easy function for splitting numeric variable in quantiles — quantile_cut","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"Using base/stats functions cut() quantile().","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"","code":"quantile_cut(   x,   groups,   y = NULL,   na.rm = TRUE,   group.names = NULL,   ordered.f = FALSE,   inc.outs = FALSE,   detail.list = FALSE )"},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"x Variable cut. groups Number groups. y alternative vector draw quantile cuts . Limits within x. Default NULL. na.rm Remove NA's. Default TRUE. group.names Names groups split . Default NULL, giving intervals names. ordered.f Set resulting vector ordered. Default FALSE. inc.outs Flag include min(x) max(x) borders case y!=NULL. detail.list flag include details ","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"vector list vector details (length 2)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/quantile_cut.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Easy function for splitting numeric variable in quantiles — quantile_cut","text":"","code":"aa <- as.numeric(sample(1:1000,2000,replace = TRUE)) x <- 1:450 y <- 6:750 summary(quantile_cut(aa,groups=4,detail.list=FALSE)) ## Cuts quartiles #>     [1,251]   (251,484]   (484,745] (745,1e+03]  #>         500         500         502         498"},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample data of cognitive testing score — score","title":"Data frame with sample data of cognitive testing score — score","text":"Contains non-identifiable organic trial data five-dimensional cognitive test.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample data of cognitive testing score — score","text":"","code":"data(score)"},{"path":"https://agdamsbo.github.io/stRoke/reference/score.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample data of cognitive testing score — score","text":"data frame 20 rows 26 variables: id id event event a_is domain index score b_is domain b index score c_is domain c index score d_is domain d index score e_is domain e index score i_is total index score a_lo domain lower ci b_lo domain b lower ci c_lo domain c lower ci d_lo domain d lower ci e_lo domain e lower ci i_lo total lower ci a_up domain upper ci b_up domain b upper ci c_up domain c upper ci d_up domain d upper ci e_up domain e upper ci i_up total upper ci a_per domain percentile b_per domain b percentile c_per domain c percentile d_per domain d percentile e_per domain e percentile i_per total percentile","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":null,"dir":"Reference","previous_headings":"","what":"Source Lines from a File — source_lines","title":"Source Lines from a File — source_lines","text":"Sources specific lines file","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Source Lines from a File — source_lines","text":"","code":"source_lines(file, lines, ...)"},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Source Lines from a File — source_lines","text":"file character string giving path file sourced. lines numeric vector line numbers sourced. ... Additional arguments passed source.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Source Lines from a File — source_lines","text":"result source.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/source_lines.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Source Lines from a File — source_lines","text":"","code":"test_file <- tempfile(fileext = \".R\") writeLines(c(\"# Line 1\", \"2+2\", \"# Line 3\"), test_file) source_lines(test_file, 1:2, echo=TRUE) #>  #> > 2 + 2 #> [1] 4"},{"path":"https://agdamsbo.github.io/stRoke/reference/stRoke-package.html","id":null,"dir":"Reference","previous_headings":"","what":"stRoke: Clinical Stroke Research — stRoke-package","title":"stRoke: Clinical Stroke Research — stRoke-package","text":"R-toolbox custom functions convenient data management analysis clinical health research teaching. package mainly collected personal use, use beyond encouraged. package migrated functions 'agdamsbo/daDoctoR', new functions added. Version follows months year. See NEWS/Changelog release notes. package includes sampled data TALOS trial (Kraglund et al (2018) doi:10.1161/STROKEAHA.117.020067 ). win_prob() function based work Zou et al (2022) doi:10.1161/STROKEAHA.121.037744 . age_calc() function based work Becker (2020) doi:10.18637/jss.v093.i02 .","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/stRoke-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"stRoke: Clinical Stroke Research — stRoke-package","text":"Maintainer: Andreas Gammelgaard Damsbo agdamsbo@clin.au.dk (ORCID)","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":null,"dir":"Reference","previous_headings":"","what":"Data frame with sample of TALOS data — talos","title":"Data frame with sample of TALOS data — talos","text":"Contains non-identifiable subset data TALOS trial.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data frame with sample of TALOS data — talos","text":"","code":"data(talos)"},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data frame with sample of TALOS data — talos","text":"data frame 200 rows 6 variables: rtreat Randomisation mrs_1 Modified Rankin scale score follow-mrs_6 Modified Rankin scale score end study hypertension Known hypertension diabetes Known diabetes civil Cohabitation status","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/talos.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Data frame with sample of TALOS data — talos","text":"doi:10.1161/STROKEAHA.117.020067","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":null,"dir":"Reference","previous_headings":"","what":"Calculates the probability of winning — win_prob","title":"Calculates the probability of winning — win_prob","text":"Calculates probability winning (winP). referenced article Zou et al (2022) proposes method calculating probability winning confidence interval p-value testing.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Calculates the probability of winning — win_prob","text":"","code":"win_prob(   data,   response = NULL,   group = NULL,   alpha = 0.05,   beta = 0.2,   group.ratio = 1,   sample.size = FALSE,   print.tables = FALSE,   dec = 3 )"},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"source","dir":"Reference","previous_headings":"","what":"Source","title":"Calculates the probability of winning — win_prob","text":"doi:10.1161/STROKEAHA.121.037744","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Calculates the probability of winning — win_prob","text":"data data frame containing response group variable. response name response variable. Takes first column empty. group name group variable. Takes second column empty. alpha alpha level hypothesis test. Default 0.05. beta beta level sample size calculation. Default 0.2. group.ratio ratio group sizes. Default 1. sample.size Flag include sample size calculation. Default FALSE. print.tables Flag print cumulative tables. Default FALSE. dec Numeric decimals print. Default 3.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Calculates the probability of winning — win_prob","text":"list containing win_prob statistics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/win_prob.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Calculates the probability of winning — win_prob","text":"","code":"win_prob(data=stRoke::talos,response=\"mrs_6\",group=\"rtreat\") #> \t Zou et al's winP (doi: 10.1161/STROKEAHA.121.037744)  #>  #> Probability of a random observation in Placebo group  #>       will have a higher response score than a random #>       observation in Active group: #>  #>   \t   winP: 0.400 (0.612, 0.372)      p=0.0125 #> -------------------------------------------- #>  #> The numbers needed to treat (NNT) are: -9 #>  #>  #>"},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":null,"dir":"Reference","previous_headings":"","what":"Write ical object — write_ical","title":"Write ical object — write_ical","text":"function creates ical file based data frame mixed events. Export .ics file using calendar::ic_write().","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Write ical object — write_ical","text":"","code":"write_ical(   df,   date = \"date\",   date.end = NA,   title = \"title\",   time.start = \"start\",   time.end = \"end\",   place = NA,   place.def = NA,   time.def = \"10:00:00\",   time.dur = 60,   descr = NA,   link = NA,   t.zone = \"CET\" )"},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Write ical object — write_ical","text":"df data frame calendar data date name event date column data frame date.end name end date column data frame title name title column data frame time.start name start time column data frame time.end name end time column data frame place name place column data frame place.def Default location use place NA time.def Default start time use time.start NA time.dur Default duration event minutes, time.end NA descr Name description/notes column . link Name link column, . t.zone character string time zone events. string must time zone recognized user's OS.","code":""},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Write ical object — write_ical","text":"ical object","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/reference/write_ical.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Write ical object — write_ical","text":"","code":"df <- data.frame(   date = c(\"2020-02-10\", \"2020-02-11\"),   date.end = c(\"2020-02-13\",NA),   title = c(\"Conference\", \"Lunch\"),   start = c(\"12:00:00\", NA),   time.end = c(\"13:00:00\", NA),   note = c(\"Hi there\",\"Remember to come\"),   link = c(\"https://icalendar.org\",\"https://agdamsbo.github.io/stRoke/\") )  write_ical(   df,   date = \"date\",   date.end = \"date.end\",   title = \"title\",   time.start = \"start\",   time.end = \"time.end\",   place.def = \"Conference Room\",   descr = \"note\",   link = \"link\" ) #> # A tibble: 2 × 7 #>   SUMMARY    DTSTART             DTEND               UID          LOCATION URL   #>   <chr>      <dttm>              <dttm>              <chr>        <chr>    <chr> #> 1 Conference 2020-02-10 12:00:00 2020-02-13 13:00:00 ical-aeeaab… Confere… http… #> 2 Lunch      2020-02-11 10:00:00 2020-02-11 11:00:00 ical-f7fe15… Confere… http… #> # ℹ 1 more variable: DESCRIPTION <chr>"},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"bug-23-6-3","dir":"Changelog","previous_headings":"","what":"Bug","title":"stRoke 23.6.3","text":"Fixed ds2dd() bug first practical implementation.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.6.2","text":"NEW: pase_calc() function calculates PASE scores raw questionnaire data. Gives sub scores well returns basic data quality completeness checks. Acknowledges difference scoring manual article Washburn PA. et al. (1999) including sitting work score calculations.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"data-23-6-2","dir":"Changelog","previous_headings":"","what":"Data:","title":"stRoke 23.6.2","text":"NEW: pase sample questionnaire data. Non-identifiable use pase_calc() function.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-6-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.6.1","text":"NEW: ‘color_plot()’ function implements ‘contrast_text()’ much inspired ‘scales::show_col()’. Passes arguments internal ‘contrast_text()’. Tests . Took way longer intended.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"stroke-2341","dir":"Changelog","previous_headings":"","what":"stRoke 23.4.1","title":"stRoke 23.4.1","text":"CRAN release: 2023-04-13","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-4-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.4.1","text":"NEW: ds2dd() creates REDCap data dictionary based data set easy upload. new vignette provided example use. separate vignette added.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-4-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.4.1","text":"newer additions package, functions clearly potential use also outside stroke research. new vector REDCap metadata headers added. Can called data(metadata_names).","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-8","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.8","text":"write_ical() easy use implementation package library(calendar) easy conversion spreadsheets ical object. Export .ics file using calendar::ic_write(). contrast_text() calculates best contrast text color given background color. use graphics.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-8","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.8","text":"first update CRAN.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-23-1-8","dir":"Changelog","previous_headings":"","what":"Documentation","title":"stRoke 23.1.8","text":"Badges, lots badges","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"stroke-2317","dir":"Changelog","previous_headings":"","what":"stRoke 23.1.7","title":"stRoke 23.1.7","text":"CRAN release: 2023-01-24","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-7","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.7","text":"version first published CRAN 24.jan.2023. also version first published zenodo.org, corresponding doi: 10.5281/zenodo.7572023.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-7","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.7","text":"redcap_read_tables() removed package now. Looking add back later minimal data acquisition tool.","code":""},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-23-1-6","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 23.1.6 - failed due to dependencies","text":"win_prop() added implement suggested methods DOI: 10.1161/STROKEAHA.121.037744, implementation “Tournament Methods” also found library(genodds). function based spreadsheet provided authors. print.win_Prop also added printing.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"notes-23-1-6","dir":"Changelog","previous_headings":"","what":"Notes:","title":"stRoke 23.1.6 - failed due to dependencies","text":"23.1.5 failed CRAN due gt_plot(). function dropped. Find as_ggplot() elsewhere. agdamsbo/REDCapRITS added “Additional_repositories”. Included references listed authors.","code":""},{"path":[]},{"path":[]},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-4","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.4","text":"plot_olr() deprecated removed. ci_plot() functionality extended include logistic model plotting. age_calc() use vapply() instead sapply() gt_plot() function added plot gt elements ggplots. bstfun. done satisfied layout patchwork.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-4","dir":"Changelog","previous_headings":"","what":"Documentation","title":"stRoke 0.23.1.4","text":"Trying complete flags goodpractice inteRgrate","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-3","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.3","text":"files_filter() added. Simple function get file names path specified filter. updated cpr_dob give warnings format recognised return NAs. ci_plot() updated actually handle binary factors. Uses glm(), lm().","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-3","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.3","text":"test, test tests satisfy codecov , course, ensure higher quality changes comply goodpractices::gp() …probably .","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.2","text":"cpr_dob() now includes format=. minor updates.","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.2","text":"Two new vignettes Taking last steps documenting releasing CRAN","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"other-0-23-1-2","dir":"Changelog","previous_headings":"","what":"Other:","title":"stRoke 0.23.1.2","text":"New hex logo","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"functions-0-23-1-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"stRoke 0.23.1.1","text":"age_calc() now also outputs numeric vector units=“days”, character vector difftime() .","code":""},{"path":"https://agdamsbo.github.io/stRoke/news/index.html","id":"documentation-0-23-1-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"stRoke 0.23.1.1","text":"Added NEWS.md file track changes package. Added codecov Added tests help gpttools","code":""}]