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cpr_female()
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AG Damsbo
parent
86e04ad78e
commit
1220391510
@ -3,3 +3,5 @@
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export(age_calc)
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export(cpr_check)
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export(cpr_dob)
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export(cpr_female)
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export(quantile_cut)
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@ -35,7 +35,7 @@ cpr_check<-function(cpr){
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p9<-as.integer(substr(x,10,10))
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p10<-as.integer(substr(x,11,11))
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v[i] <- ifelse((p1*4+p2*3+p3*2+p4*7+p5*6+p6*5+p7*4+p8*3+p9*2+p10) %% 11 == 0,TRUE,FALSE)
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v[i] <- if((p1*4+p2*3+p3*2+p4*7+p5*6+p6*5+p7*4+p8*3+p9*2+p10) %% 11 == 0) TRUE else FALSE
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}
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@ -109,3 +109,20 @@ cpr_dob<-function(cpr){
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as.Date(dobs, origin = "1970-01-01")
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}
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#' Determine female sex from CPR
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#'
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#' Just checking if last number of a string is equal or not.
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#' @param cpr cpr-numbers as ddmmyy[-.]xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.
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#' @keywords cpr
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#'
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#' @return Logical vector
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#' @export
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#' @examples
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#' cpr_female("231045-0637")
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cpr_female<-function(cpr){
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##Input as vector of DK cpr numbers, format "ddmmyy-xxxx", returns sex according to cpr
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x <- nchar(as.character(cpr)) # Formats as character to avoid confusions
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as.logical(as.integer(substr(cpr, start = x, stop = x)) %% 2)
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}
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36
R/quantile_cut.R
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36
R/quantile_cut.R
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@ -0,0 +1,36 @@
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#' Easy function for splitting numeric variable in quantiles
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#'
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#' Using base/stats functions cut() and quantile().
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#' @param x Variable to cut.
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#' @param groups Number of groups.
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#' @param y alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.
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#' @param na.rm Remove NA's. Default is TRUE.
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#' @param group.names Names of groups to split to. Default is NULL, giving intervals as names.
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#' @param ordered.f Set resulting vector as ordered. Default is FALSE.
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#' @param inc.outs Flag to include min(x) and max(x) as boarders in case of y!=NULL.
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#' @keywords quantile
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#' @export
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#' @examples
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#' aa <- as.numeric(sample(1:1000,2000,replace = TRUE))
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#' x <- 1:450
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#' y <- 6:750
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#' summary(quantile_cut(aa,groups=4)) ## Cuts quartiles
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quantile_cut<-function (x, groups,y=NULL, na.rm = TRUE, group.names = NULL, ordered.f = FALSE, inc.outs=FALSE,detail.lst=TRUE)
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{
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if (!is.null(y)){
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q<-quantile(y, probs = seq(0, 1, 1/groups), na.rm = na.rm, names = TRUE, type = 7)
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if (inc.outs){ # Setting cut boardes to include outliers in x compared to y.
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q[1]<-min(x,na.rm = TRUE)
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q[length(q)]<-max(x,na.rm = TRUE)
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}
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}
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if (is.null(y)){
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q<-quantile(x, probs = seq(0, 1, 1/groups), na.rm = na.rm, names = TRUE, type = 7)
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}
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d<-cut(x, q, include.lowest = TRUE, labels = group.names,
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ordered_result = ordered.f)
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if (detail.lst){return(list(d,q))} else {return(d)}
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}
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@ -2,5 +2,5 @@ pandoc: 2.19.2
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pkgdown: 2.0.6
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pkgdown_sha: ~
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articles: {}
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last_built: 2022-09-22T13:21Z
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last_built: 2022-09-22T13:44Z
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86
docs/reference/cpr_female.html
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86
docs/reference/cpr_female.html
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@ -0,0 +1,86 @@
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Just checking if last number of a string is equal or not."><title>Determine female sex from CPR — cpr_female • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Determine female sex from CPR — cpr_female"><meta property="og:description" content="Just checking if last number of a string is equal or not."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.22.9.2</small>
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<a class="nav-link" href="../reference/index.html">Reference</a>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="" class="logo" alt=""><h1>Determine female sex from CPR</h1>
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<div class="d-none name"><code>cpr_female.Rd</code></div>
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</div>
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<div class="ref-description section level2">
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<p>Just checking if last number of a string is equal or not.</p>
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</div>
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<div class="section level2">
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">cpr_female</span><span class="op">(</span><span class="va">cpr</span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>cpr</dt>
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<dd><p>cpr-numbers as ddmmyy-.xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.</p></dd>
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</dl></div>
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<div class="section level2">
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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<p>Logical vector</p>
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</div>
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<div class="section level2">
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">cpr_female</span><span class="op">(</span><span class="st">"231045-0637"</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> [1] TRUE</span>
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</code></pre></div>
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</div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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</nav></aside></div>
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<footer><div class="pkgdown-footer-left">
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<p></p><p>Developed by Andreas Gammelgaard Damsbo.</p>
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<div class="pkgdown-footer-right">
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
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</body></html>
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@ -60,6 +60,16 @@
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<code><a href="cpr_dob.html">cpr_dob()</a></code>
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</dt>
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<dd>Extracting date of birth from CPR</dd>
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</dl><dl><dt>
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<code><a href="cpr_female.html">cpr_female()</a></code>
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</dt>
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<dd>Determine female sex from CPR</dd>
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</dl><dl><dt>
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<code><a href="quantile_cut.html">quantile_cut()</a></code>
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</dt>
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<dd>Easy function for splitting numeric variable in quantiles</dd>
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</dl></div>
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</main></div>
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118
docs/reference/quantile_cut.html
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118
docs/reference/quantile_cut.html
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@ -0,0 +1,118 @@
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Using base/stats functions cut() and quantile()."><title>Easy function for splitting numeric variable in quantiles — quantile_cut • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Easy function for splitting numeric variable in quantiles — quantile_cut"><meta property="og:description" content="Using base/stats functions cut() and quantile()."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="" class="logo" alt=""><h1>Easy function for splitting numeric variable in quantiles</h1>
|
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|
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<div class="d-none name"><code>quantile_cut.Rd</code></div>
|
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</div>
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<div class="ref-description section level2">
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<p>Using base/stats functions cut() and quantile().</p>
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</div>
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<div class="section level2">
|
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">quantile_cut</span><span class="op">(</span></span>
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<span> <span class="va">x</span>,</span>
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<span> <span class="va">groups</span>,</span>
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<span> y <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> na.rm <span class="op">=</span> <span class="cn">TRUE</span>,</span>
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<span> group.names <span class="op">=</span> <span class="cn">NULL</span>,</span>
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<span> ordered.f <span class="op">=</span> <span class="cn">FALSE</span>,</span>
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<span> inc.outs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
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<span> detail.lst <span class="op">=</span> <span class="cn">TRUE</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>x</dt>
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<dd><p>Variable to cut.</p></dd>
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<dt>groups</dt>
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<dd><p>Number of groups.</p></dd>
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<dt>y</dt>
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<dd><p>alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.</p></dd>
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<dt>na.rm</dt>
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<dd><p>Remove NA's. Default is TRUE.</p></dd>
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||||
|
||||
<dt>group.names</dt>
|
||||
<dd><p>Names of groups to split to. Default is NULL, giving intervals as names.</p></dd>
|
||||
|
||||
|
||||
<dt>ordered.f</dt>
|
||||
<dd><p>Set resulting vector as ordered. Default is FALSE.</p></dd>
|
||||
|
||||
|
||||
<dt>inc.outs</dt>
|
||||
<dd><p>Flag to include min(x) and max(x) as boarders in case of y!=NULL.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">aa</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/numeric.html" class="external-link">as.numeric</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">1000</span>,<span class="fl">2000</span>,replace <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="va">x</span> <span class="op"><-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">450</span></span></span>
|
||||
<span class="r-in"><span><span class="va">y</span> <span class="op"><-</span> <span class="fl">6</span><span class="op">:</span><span class="fl">750</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="fu">quantile_cut</span><span class="op">(</span><span class="va">aa</span>,groups<span class="op">=</span><span class="fl">4</span><span class="op">)</span><span class="op">)</span> <span class="co">## Cuts quartiles</span></span></span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> Length Class Mode </span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1,] 2000 factor numeric</span>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [2,] 5 -none- numeric</span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
<footer><div class="pkgdown-footer-left">
|
||||
<p></p><p>Developed by Andreas Gammelgaard Damsbo.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
File diff suppressed because one or more lines are too long
@ -21,9 +21,15 @@
|
||||
<url>
|
||||
<loc>/reference/cpr_dob.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>/reference/cpr_female.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>/reference/index.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>/reference/quantile_cut.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>/reference/stRoke-package.html</loc>
|
||||
</url>
|
||||
|
||||
21
man/cpr_female.Rd
Normal file
21
man/cpr_female.Rd
Normal file
@ -0,0 +1,21 @@
|
||||
% Generated by roxygen2: do not edit by hand
|
||||
% Please edit documentation in R/cpr_tools.R
|
||||
\name{cpr_female}
|
||||
\alias{cpr_female}
|
||||
\title{Determine female sex from CPR}
|
||||
\usage{
|
||||
cpr_female(cpr)
|
||||
}
|
||||
\arguments{
|
||||
\item{cpr}{cpr-numbers as ddmmyy\link{-.}xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.}
|
||||
}
|
||||
\value{
|
||||
Logical vector
|
||||
}
|
||||
\description{
|
||||
Just checking if last number of a string is equal or not.
|
||||
}
|
||||
\examples{
|
||||
cpr_female("231045-0637")
|
||||
}
|
||||
\keyword{cpr}
|
||||
42
man/quantile_cut.Rd
Normal file
42
man/quantile_cut.Rd
Normal file
@ -0,0 +1,42 @@
|
||||
% Generated by roxygen2: do not edit by hand
|
||||
% Please edit documentation in R/quantile_cut.R
|
||||
\name{quantile_cut}
|
||||
\alias{quantile_cut}
|
||||
\title{Easy function for splitting numeric variable in quantiles}
|
||||
\usage{
|
||||
quantile_cut(
|
||||
x,
|
||||
groups,
|
||||
y = NULL,
|
||||
na.rm = TRUE,
|
||||
group.names = NULL,
|
||||
ordered.f = FALSE,
|
||||
inc.outs = FALSE,
|
||||
detail.lst = TRUE
|
||||
)
|
||||
}
|
||||
\arguments{
|
||||
\item{x}{Variable to cut.}
|
||||
|
||||
\item{groups}{Number of groups.}
|
||||
|
||||
\item{y}{alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.}
|
||||
|
||||
\item{na.rm}{Remove NA's. Default is TRUE.}
|
||||
|
||||
\item{group.names}{Names of groups to split to. Default is NULL, giving intervals as names.}
|
||||
|
||||
\item{ordered.f}{Set resulting vector as ordered. Default is FALSE.}
|
||||
|
||||
\item{inc.outs}{Flag to include min(x) and max(x) as boarders in case of y!=NULL.}
|
||||
}
|
||||
\description{
|
||||
Using base/stats functions cut() and quantile().
|
||||
}
|
||||
\examples{
|
||||
aa <- as.numeric(sample(1:1000,2000,replace = TRUE))
|
||||
x <- 1:450
|
||||
y <- 6:750
|
||||
summary(quantile_cut(aa,groups=4)) ## Cuts quartiles
|
||||
}
|
||||
\keyword{quantile}
|
||||
@ -15,3 +15,12 @@ test_that("cpr_dob() works for vectors, giving logicals", {
|
||||
})
|
||||
|
||||
################################################################################
|
||||
|
||||
test_that("cpr_female() works for vectors, giving logicals", {
|
||||
result <- cpr_female(c("2310450637", "010115-4000", "0101896000","010189-3000","300450-1030","010150-4021"))
|
||||
expect_type(result, "logical")
|
||||
expect_length(result, 6)
|
||||
expect_equal(result[2], FALSE)
|
||||
})
|
||||
|
||||
################################################################################
|
||||
Loading…
Reference in New Issue
Block a user