cpr_female()

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AG Damsbo 2022-09-22 15:45:40 +02:00
parent 86e04ad78e
commit 1220391510
12 changed files with 350 additions and 3 deletions

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@ -3,3 +3,5 @@
export(age_calc) export(age_calc)
export(cpr_check) export(cpr_check)
export(cpr_dob) export(cpr_dob)
export(cpr_female)
export(quantile_cut)

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@ -35,7 +35,7 @@ cpr_check<-function(cpr){
p9<-as.integer(substr(x,10,10)) p9<-as.integer(substr(x,10,10))
p10<-as.integer(substr(x,11,11)) p10<-as.integer(substr(x,11,11))
v[i] <- ifelse((p1*4+p2*3+p3*2+p4*7+p5*6+p6*5+p7*4+p8*3+p9*2+p10) %% 11 == 0,TRUE,FALSE) v[i] <- if((p1*4+p2*3+p3*2+p4*7+p5*6+p6*5+p7*4+p8*3+p9*2+p10) %% 11 == 0) TRUE else FALSE
} }
@ -109,3 +109,20 @@ cpr_dob<-function(cpr){
as.Date(dobs, origin = "1970-01-01") as.Date(dobs, origin = "1970-01-01")
} }
#' Determine female sex from CPR
#'
#' Just checking if last number of a string is equal or not.
#' @param cpr cpr-numbers as ddmmyy[-.]xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.
#' @keywords cpr
#'
#' @return Logical vector
#' @export
#' @examples
#' cpr_female("231045-0637")
cpr_female<-function(cpr){
##Input as vector of DK cpr numbers, format "ddmmyy-xxxx", returns sex according to cpr
x <- nchar(as.character(cpr)) # Formats as character to avoid confusions
as.logical(as.integer(substr(cpr, start = x, stop = x)) %% 2)
}

36
R/quantile_cut.R Normal file
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@ -0,0 +1,36 @@
#' Easy function for splitting numeric variable in quantiles
#'
#' Using base/stats functions cut() and quantile().
#' @param x Variable to cut.
#' @param groups Number of groups.
#' @param y alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.
#' @param na.rm Remove NA's. Default is TRUE.
#' @param group.names Names of groups to split to. Default is NULL, giving intervals as names.
#' @param ordered.f Set resulting vector as ordered. Default is FALSE.
#' @param inc.outs Flag to include min(x) and max(x) as boarders in case of y!=NULL.
#' @keywords quantile
#' @export
#' @examples
#' aa <- as.numeric(sample(1:1000,2000,replace = TRUE))
#' x <- 1:450
#' y <- 6:750
#' summary(quantile_cut(aa,groups=4)) ## Cuts quartiles
quantile_cut<-function (x, groups,y=NULL, na.rm = TRUE, group.names = NULL, ordered.f = FALSE, inc.outs=FALSE,detail.lst=TRUE)
{
if (!is.null(y)){
q<-quantile(y, probs = seq(0, 1, 1/groups), na.rm = na.rm, names = TRUE, type = 7)
if (inc.outs){ # Setting cut boardes to include outliers in x compared to y.
q[1]<-min(x,na.rm = TRUE)
q[length(q)]<-max(x,na.rm = TRUE)
}
}
if (is.null(y)){
q<-quantile(x, probs = seq(0, 1, 1/groups), na.rm = na.rm, names = TRUE, type = 7)
}
d<-cut(x, q, include.lowest = TRUE, labels = group.names,
ordered_result = ordered.f)
if (detail.lst){return(list(d,q))} else {return(d)}
}

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@ -2,5 +2,5 @@ pandoc: 2.19.2
pkgdown: 2.0.6 pkgdown: 2.0.6
pkgdown_sha: ~ pkgdown_sha: ~
articles: {} articles: {}
last_built: 2022-09-22T13:21Z last_built: 2022-09-22T13:44Z

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@ -0,0 +1,86 @@
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<img src="" class="logo" alt=""><h1>Determine female sex from CPR</h1>
<div class="d-none name"><code>cpr_female.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Just checking if last number of a string is equal or not.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">cpr_female</span><span class="op">(</span><span class="va">cpr</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>cpr</dt>
<dd><p>cpr-numbers as ddmmyy-.xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>Logical vector</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">cpr_female</span><span class="op">(</span><span class="st">"231045-0637"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1] TRUE</span>
</code></pre></div>
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@ -60,6 +60,16 @@
<code><a href="cpr_dob.html">cpr_dob()</a></code> <code><a href="cpr_dob.html">cpr_dob()</a></code>
</dt> </dt>
<dd>Extracting date of birth from CPR</dd> <dd>Extracting date of birth from CPR</dd>
</dl><dl><dt>
<code><a href="cpr_female.html">cpr_female()</a></code>
</dt>
<dd>Determine female sex from CPR</dd>
</dl><dl><dt>
<code><a href="quantile_cut.html">quantile_cut()</a></code>
</dt>
<dd>Easy function for splitting numeric variable in quantiles</dd>
</dl></div> </dl></div>
</main></div> </main></div>

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@ -0,0 +1,118 @@
<!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Using base/stats functions cut() and quantile()."><title>Easy function for splitting numeric variable in quantiles — quantile_cut • stRoke</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.1.3/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.1.3/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.rawgit.com/afeld/bootstrap-toc/v1.0.1/dist/bootstrap-toc.min.js"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Easy function for splitting numeric variable in quantiles — quantile_cut"><meta property="og:description" content="Using base/stats functions cut() and quantile()."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<img src="" class="logo" alt=""><h1>Easy function for splitting numeric variable in quantiles</h1>
<div class="d-none name"><code>quantile_cut.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Using base/stats functions cut() and quantile().</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">quantile_cut</span><span class="op">(</span></span>
<span> <span class="va">x</span>,</span>
<span> <span class="va">groups</span>,</span>
<span> y <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> na.rm <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> group.names <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> ordered.f <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> inc.outs <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> detail.lst <span class="op">=</span> <span class="cn">TRUE</span></span>
<span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>x</dt>
<dd><p>Variable to cut.</p></dd>
<dt>groups</dt>
<dd><p>Number of groups.</p></dd>
<dt>y</dt>
<dd><p>alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.</p></dd>
<dt>na.rm</dt>
<dd><p>Remove NA's. Default is TRUE.</p></dd>
<dt>group.names</dt>
<dd><p>Names of groups to split to. Default is NULL, giving intervals as names.</p></dd>
<dt>ordered.f</dt>
<dd><p>Set resulting vector as ordered. Default is FALSE.</p></dd>
<dt>inc.outs</dt>
<dd><p>Flag to include min(x) and max(x) as boarders in case of y!=NULL.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">aa</span> <span class="op">&lt;-</span> <span class="fu"><a href="https://rdrr.io/r/base/numeric.html" class="external-link">as.numeric</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fl">1</span><span class="op">:</span><span class="fl">1000</span>,<span class="fl">2000</span>,replace <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">x</span> <span class="op">&lt;-</span> <span class="fl">1</span><span class="op">:</span><span class="fl">450</span></span></span>
<span class="r-in"><span><span class="va">y</span> <span class="op">&lt;-</span> <span class="fl">6</span><span class="op">:</span><span class="fl">750</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/summary.html" class="external-link">summary</a></span><span class="op">(</span><span class="fu">quantile_cut</span><span class="op">(</span><span class="va">aa</span>,groups<span class="op">=</span><span class="fl">4</span><span class="op">)</span><span class="op">)</span> <span class="co">## Cuts quartiles</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Length Class Mode </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [1,] 2000 factor numeric</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> [2,] 5 -none- numeric</span>
</code></pre></div>
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@ -21,9 +21,15 @@
<url> <url>
<loc>/reference/cpr_dob.html</loc> <loc>/reference/cpr_dob.html</loc>
</url> </url>
<url>
<loc>/reference/cpr_female.html</loc>
</url>
<url> <url>
<loc>/reference/index.html</loc> <loc>/reference/index.html</loc>
</url> </url>
<url>
<loc>/reference/quantile_cut.html</loc>
</url>
<url> <url>
<loc>/reference/stRoke-package.html</loc> <loc>/reference/stRoke-package.html</loc>
</url> </url>

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man/cpr_female.Rd Normal file
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/cpr_tools.R
\name{cpr_female}
\alias{cpr_female}
\title{Determine female sex from CPR}
\usage{
cpr_female(cpr)
}
\arguments{
\item{cpr}{cpr-numbers as ddmmyy\link{-.}xxxx or ddmmyyxxxx. Also mixed formatting. Vector or data frame column.}
}
\value{
Logical vector
}
\description{
Just checking if last number of a string is equal or not.
}
\examples{
cpr_female("231045-0637")
}
\keyword{cpr}

42
man/quantile_cut.Rd Normal file
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/quantile_cut.R
\name{quantile_cut}
\alias{quantile_cut}
\title{Easy function for splitting numeric variable in quantiles}
\usage{
quantile_cut(
x,
groups,
y = NULL,
na.rm = TRUE,
group.names = NULL,
ordered.f = FALSE,
inc.outs = FALSE,
detail.lst = TRUE
)
}
\arguments{
\item{x}{Variable to cut.}
\item{groups}{Number of groups.}
\item{y}{alternative vector to draw quantile cuts from. Limits has to be within x. Default is NULL.}
\item{na.rm}{Remove NA's. Default is TRUE.}
\item{group.names}{Names of groups to split to. Default is NULL, giving intervals as names.}
\item{ordered.f}{Set resulting vector as ordered. Default is FALSE.}
\item{inc.outs}{Flag to include min(x) and max(x) as boarders in case of y!=NULL.}
}
\description{
Using base/stats functions cut() and quantile().
}
\examples{
aa <- as.numeric(sample(1:1000,2000,replace = TRUE))
x <- 1:450
y <- 6:750
summary(quantile_cut(aa,groups=4)) ## Cuts quartiles
}
\keyword{quantile}

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@ -14,4 +14,13 @@ test_that("cpr_dob() works for vectors, giving logicals", {
expect_length(result, 6) expect_length(result, 6)
}) })
################################################################################
test_that("cpr_female() works for vectors, giving logicals", {
result <- cpr_female(c("2310450637", "010115-4000", "0101896000","010189-3000","300450-1030","010150-4021"))
expect_type(result, "logical")
expect_length(result, 6)
expect_equal(result[2], FALSE)
})
################################################################################ ################################################################################