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<main id="main" class="col-md-9"><div class="page-header">
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<img src="" class="logo" alt=""><h1>Simple REDCap workflow</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/stRoke/blob/HEAD/vignettes/redcap.Rmd" class="external-link"><code>vignettes/redcap.Rmd</code></a></small>
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<div class="d-none name"><code>redcap.Rmd</code></div>
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</div>
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<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://agdamsbo.github.io/stRoke/" class="external-link">stRoke</a></span><span class="op">)</span></span></code></pre></div>
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<div class="section level2">
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<h2 id="working-with-data-from-redcap">Working with data from REDCap<a class="anchor" aria-label="anchor" href="#working-with-data-from-redcap"></a>
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</h2>
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<p><a href="https://www.project-redcap.org" class="external-link">REDCap</a> is an excellent
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tool for clinical data acquisition and storage. It is widely used world
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wide and is the standard tool for medical research data in Denmark.</p>
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<p>In the case of analysing data directly whole storing data in REDCap,
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the API functionality is very convenient and secure, as you are not
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storing (possibly) sensitive data permanently on your computer.</p>
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<p>When using the “events” or “repeated instruments” functionality of
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REDCap, the data storage format is a little confusing to work with, when
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being accustomed to tidy data.</p>
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<p>The <a href="https://ouhscbbmc.github.io/REDCapR/" class="external-link"><code>library(REDCapR)</code></a>
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provides a simple way of working with data, however, the package just
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exports data in standard format.</p>
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<div class="section level3">
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<h3 id="examples">Examples<a class="anchor" aria-label="anchor" href="#examples"></a>
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</h3>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://ouhscbbmc.github.io/REDCapR/" class="external-link">REDCapR</a></span><span class="op">)</span></span>
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<span><span class="co"># Returns the variables "record_id" and "age".</span></span>
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<span><span class="va">ds_some_vars</span> <span class="op"><-</span> <span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">redcap_read</a></span><span class="op">(</span></span>
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<span> redcap_uri <span class="op">=</span> <span class="st">"https://redcap.au.dk/api/"</span>, <span class="co"># This is the address for projects at the AU-server</span></span>
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<span> token <span class="op">=</span> <span class="st">"YOUR_API_KEY_GOES_HERE"</span>,</span>
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<span> fields <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>, <span class="st">"age"</span><span class="op">)</span></span>
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<span><span class="op">)</span><span class="op">$</span><span class="va">data</span> </span>
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<span></span>
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<span><span class="co"># Return only records with IDs of 1 and 4</span></span>
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<span><span class="va">ds_some_rows</span> <span class="op"><-</span> <span class="fu"><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">redcap_read</a></span><span class="op">(</span></span>
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<span> redcap_uri <span class="op">=</span> <span class="st">"https://redcap.au.dk/api/"</span>, <span class="co"># This is the address for projects at the AU-server</span></span>
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<span> token <span class="op">=</span> <span class="st">"YOUR_API_KEY_GOES_HERE"</span>,</span>
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<span> records <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">1</span>, <span class="fl">4</span><span class="op">)</span></span>
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<span><span class="op">)</span><span class="op">$</span><span class="va">data</span></span></code></pre></div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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<footer><div class="pkgdown-footer-left">
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<p></p>
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<p>Developed by Andreas Gammelgaard Damsbo.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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