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35 lines
859 B
R
35 lines
859 B
R
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#' Summarising function of HWE calculation
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#'
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#' For easy printing.
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#' @param a1 Allele 1.
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#' @param a2 Allele 2.
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#' @param f factor for grouping.
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#' @keywords hardy-weinberg-equllibrium
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#' @export
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#' @examples
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#' hwe_sum()
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hwe_sum<-function(a1,a2,f){
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## HWE summarising function, for several groups defined by factor f. Alleles are provided as vectors, a1 and a2.
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source("https://raw.githubusercontent.com/agdamsbo/research/master/hwe_allele.R")
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lst<-list()
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df<-data.frame(cbind(a1,a2))
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for (i in 1:length(ls<-split(df,f))){
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grp<-names(ls)[i]
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obs<-data.frame(hwe_allele(ls[[i]][,1],ls[[i]][,2])[[c("observed.dist")]])
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pval<-round(hwe_allele(ls[[i]][,1],ls[[i]][,2])[[c("p.value")]],3)
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prnt<-paste0(obs[1,]," (",obs[2,],")")
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names(prnt)<-names(obs)
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lst<-list(lst,grp,obs.dist=obs,print=prnt,hwe.pv=pval)
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}
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return(lst)
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}
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