mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-22 21:40:23 +01:00
50 lines
1.5 KiB
R
50 lines
1.5 KiB
R
# Setup -------------------------------------------------------------------
|
|
|
|
devtools::load_all()
|
|
|
|
library(digest)
|
|
library(magrittr)
|
|
library(jsonlite)
|
|
|
|
|
|
ref_data_location <- function(x) file.path("tests","testthat","data", x)
|
|
|
|
# RCurl -------------------------------------------------------------------
|
|
|
|
REDCap_split(
|
|
ref_data_location("ExampleProject_records.json") %>% fromJSON,
|
|
ref_data_location("ExampleProject_metadata.json") %>% fromJSON
|
|
) %>% digest
|
|
|
|
|
|
# Basic CSV ---------------------------------------------------------------
|
|
|
|
REDCap_split(
|
|
ref_data_location("ExampleProject_DATA_2018-06-07_1129.csv") %>% read.csv,
|
|
ref_data_location("ExampleProject_DataDictionary_2018-06-07.csv") %>% read.csv
|
|
) %>% digest
|
|
|
|
# REDCap R Export ---------------------------------------------------------
|
|
|
|
source("tests/testthat/helper-ExampleProject_R_2018-06-07_1129.r")
|
|
|
|
REDCap_split(
|
|
ref_data_location("ExampleProject_DATA_2018-06-07_1129.csv") %>%
|
|
read.csv %>%
|
|
REDCap_process_csv,
|
|
ref_data_location("ExampleProject_DataDictionary_2018-06-07.csv") %>% read.csv
|
|
) %>% digest
|
|
|
|
# Longitudinal data from @pbchase; Issue #7 -------------------------------
|
|
|
|
file_paths <- vapply(
|
|
c(
|
|
records = "WARRIORtestForSoftwa_DATA_2018-06-21_1431.csv",
|
|
metadata = "WARRIORtestForSoftwareUpgrades_DataDictionary_2018-06-21.csv"
|
|
), FUN.VALUE = "character", ref_data_location
|
|
)
|
|
|
|
redcap <- lapply(file_paths, read.csv, stringsAsFactors = FALSE)
|
|
redcap[["metadata"]] <- with(redcap, metadata[metadata[,1] > "",])
|
|
with(redcap, REDCap_split(records, metadata)) %>% digest
|