mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-22 21:40:23 +01:00
69 lines
1.8 KiB
R
69 lines
1.8 KiB
R
context("CSV Exports")
|
|
|
|
# Set up the path and data -------------------------------------------------
|
|
metadata <- read.csv(
|
|
get_data_location("ExampleProject_DataDictionary_2018-06-07.csv"),
|
|
stringsAsFactors = TRUE
|
|
)
|
|
|
|
records <- read.csv(
|
|
get_data_location("ExampleProject_DATA_2018-06-07_1129.csv"),
|
|
stringsAsFactors = TRUE
|
|
)
|
|
|
|
redcap_output_csv1 <- REDCap_split(records, metadata)
|
|
|
|
# Test that basic CSV export matches reference ------------------------------
|
|
test_that("CSV export matches reference", {
|
|
expect_known_hash(redcap_output_csv1, "f74558d1939c17d9ff0e08a19b956e26")
|
|
})
|
|
|
|
# Test that R code enhanced CSV export matches reference --------------------
|
|
if (requireNamespace("Hmisc", quietly = TRUE)) {
|
|
test_that("R code enhanced export matches reference", {
|
|
redcap_output_csv2 <- REDCap_split(REDCap_process_csv(records), metadata)
|
|
|
|
expect_known_hash(redcap_output_csv2, "34f82cab35bf8aae47d08cd96f743e6b")
|
|
})
|
|
}
|
|
|
|
|
|
if (requireNamespace("readr", quietly = TRUE)) {
|
|
|
|
context("Compatibility with readr")
|
|
|
|
metadata <- readr::read_csv(
|
|
get_data_location(
|
|
"ExampleProject_DataDictionary_2018-06-07.csv"
|
|
)
|
|
)
|
|
|
|
records <- readr::read_csv(
|
|
get_data_location(
|
|
"ExampleProject_DATA_2018-06-07_1129.csv"
|
|
)
|
|
)
|
|
|
|
redcap_output_readr <- REDCap_split(records, metadata)
|
|
|
|
expect_matching_elements <- function(FUN) {
|
|
FUN <- match.fun(FUN)
|
|
expect_identical(
|
|
lapply(redcap_output_readr, FUN),
|
|
lapply(redcap_output_csv1, FUN)
|
|
)
|
|
}
|
|
|
|
test_that("Result of data read in with `readr` will match result with `read.csv`", {
|
|
|
|
# The list itself
|
|
expect_identical(length(redcap_output_readr), length(redcap_output_csv1))
|
|
expect_identical(names(redcap_output_readr), names(redcap_output_csv1))
|
|
|
|
# Each element of the list
|
|
expect_matching_elements(names)
|
|
expect_matching_elements(dim)
|
|
})
|
|
|
|
}
|