mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-22 21:40:23 +01:00
165 lines
17 KiB
HTML
165 lines
17 KiB
HTML
<!DOCTYPE html>
|
|
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Changelog"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
|
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
|
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
|
<![endif]--></head><body>
|
|
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
|
|
|
|
|
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
|
|
|
|
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
|
|
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.2.1</small>
|
|
|
|
|
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
|
<span class="navbar-toggler-icon"></span>
|
|
</button>
|
|
|
|
<div id="navbar" class="collapse navbar-collapse ms-3">
|
|
<ul class="navbar-nav me-auto"><li class="nav-item">
|
|
<a class="nav-link" href="../reference/index.html">Reference</a>
|
|
</li>
|
|
<li class="nav-item dropdown">
|
|
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
|
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
|
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
|
</div>
|
|
</li>
|
|
<li class="active nav-item">
|
|
<a class="nav-link" href="../news/index.html">Changelog</a>
|
|
</li>
|
|
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
|
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
|
|
|
<ul class="navbar-nav"><li class="nav-item">
|
|
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
|
<span class="fab fa fab fa-github fa-lg"></span>
|
|
|
|
</a>
|
|
</li>
|
|
</ul></div>
|
|
|
|
|
|
</div>
|
|
</nav><div class="container template-news">
|
|
<div class="row">
|
|
<main id="main" class="col-md-9"><div class="page-header">
|
|
<img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
|
|
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
|
</div>
|
|
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="24.2.1" id="redcapcast-2421">REDCapCAST 24.2.1<a class="anchor" aria-label="anchor" href="#redcapcast-2421"></a></h2>
|
|
<div class="section level4">
|
|
<h4 id="functions-24-2-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-2-1"></a></h4>
|
|
<ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li>
|
|
<li><p>Fix: <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code>: fixed to actually allow project naming. also specifically asks for uri. widening updated to work.</p></li>
|
|
<li><p>Fix: <code><a href="../reference/redcap_wider.html">redcap_wider()</a></code>: updated to accept more formats and allow handling of simple projects without repeating instruments and not longitudinal.</p></li>
|
|
<li><p>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: now handles non-longitudinal project without repeatable instruments.</p></li>
|
|
<li><p>NEW: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: extension of the <code><a href="../reference/ds2dd.html">ds2dd()</a></code>, which serves to preserve as much metadata as possible automatically. Depends on a group of helper functions also introduced. Of special note is the <code><a href="../reference/guess_time_only_filter.html">guess_time_only_filter()</a></code>, which will try to guess which columns/variables should be formatted as time only formats. Supports hms time format. DETAILED INSTRUCTION AND VIGNETTE IS PENDING.</p></li>
|
|
<li><p>NEW: <code><a href="../reference/read_redcap_instrument.html">read_redcap_instrument()</a></code> convenience function to retrieve complete instrument. Goes a little against the focused approach. DETAILED INSTRUCTION IS PENDING.</p></li>
|
|
<li><p>NEW: <code><a href="../reference/ds2ical.html">ds2ical()</a></code> converts data set to ical format with easy glue string for summary and description. Export .ics file with <code><a href="https://rdrr.io/pkg/calendar/man/ic_write.html" class="external-link">calendar::ic_write()</a></code>.</p></li>
|
|
</ul></div>
|
|
<div class="section level4">
|
|
<h4 id="other-24-2-1">Other<a class="anchor" aria-label="anchor" href="#other-24-2-1"></a></h4>
|
|
<p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package.</p>
|
|
</div>
|
|
<div class="section level4">
|
|
<h4 id="whishes-before-cran-release-24-2-1">Whishes before CRAN release<a class="anchor" aria-label="anchor" href="#whishes-before-cran-release-24-2-1"></a></h4>
|
|
<ul><li><p>Vignette for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
|
|
<li><p>Tests for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p>
|
|
<div class="section level4">
|
|
<h4 id="functions-24-1-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-1-1"></a></h4>
|
|
<ul><li>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: checking form names based on data dictionary to allow handling of non-longitudinal projects. Prints invalid form names and invalid event names. If invalid form names are supplied to <code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code> (which is the backbone), all forms are exported, which is not what we want with a focused approach. Invalid event names will give an output with a rather peculiar formatting. Checking of field names validity is also added.</li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.12.1" id="redcapcast-23121">REDCapCAST 23.12.1<a class="anchor" aria-label="anchor" href="#redcapcast-23121"></a></h2><p class="text-muted">CRAN release: 2023-12-20</p>
|
|
<p>One new function to ease secure dataset retrieval and a few bug fixes.</p>
|
|
<div class="section level4">
|
|
<h4 id="functions-23-12-1">Functions<a class="anchor" aria-label="anchor" href="#functions-23-12-1"></a></h4>
|
|
<ul><li>New: <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code> function to ease the retrieval of a dataset with <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> with <code>keyring</code>-package based key storage, which handles secure API set, storage and retrieval. Relies on a small helper function, <code><a href="../reference/get_api_key.html">get_api_key()</a></code>, which wraps relevant <code>keyring</code>-functions. Includes option to cast the data in a wide format with flag <code>widen.data</code>.</li>
|
|
<li>Fix: <code><a href="../reference/REDCap_split.html">REDCap_split()</a></code>: when using this function on its own, supplying a data set with check boxes would fail if metadata is supplied as a tibble. Metadata is now converted to data.frame. Fixed.</li>
|
|
<li>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: fixed bug when supplying events.</li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.6.2" id="redcapcast-2362">REDCapCAST 23.6.2<a class="anchor" aria-label="anchor" href="#redcapcast-2362"></a></h2><p class="text-muted">CRAN release: 2023-07-04</p>
|
|
<p>This version marks the introduction of a few helper functions to handle database creation.</p>
|
|
<div class="section level4">
|
|
<h4 id="functions-23-6-2">Functions<a class="anchor" aria-label="anchor" href="#functions-23-6-2"></a></h4>
|
|
<ul><li><p>New: <code><a href="../reference/ds2dd.html">ds2dd()</a></code> function migrating from the <code>stRoke</code>-package. Assists in building a data dictionary for REDCap from a dataset.</p></li>
|
|
<li><p>New: <code><a href="../reference/strsplitx.html">strsplitx()</a></code> function to ease the string splitting as an extension of <code><a href="https://rdrr.io/r/base/strsplit.html" class="external-link">base::strsplit()</a></code>. Inspiration from <a href="https://stackoverflow.com/a/11014253/21019325" class="external-link uri">https://stackoverflow.com/a/11014253/21019325</a> and <a href="https://www.r-bloggers.com/2018/04/strsplit-but-keeping-the-delimiter/" class="external-link uri">https://www.r-bloggers.com/2018/04/strsplit-but-keeping-the-delimiter/</a>.</p></li>
|
|
<li><p>New: <code>d2n()</code> function converts single digits to written numbers. Used to sanitize variable and form names in REDCap database creation. For more universal number to word I would suggest <code>english::word()</code> or <code><a href="https://rdrr.io/pkg/xfun/man/numbers_to_words.html" class="external-link">xfun::numbers_to_words()</a></code>, though I have not been testing these.</p></li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.6.1" id="redcapcast-2361">REDCapCAST 23.6.1<a class="anchor" aria-label="anchor" href="#redcapcast-2361"></a></h2><p class="text-muted">CRAN release: 2023-06-06</p>
|
|
<div class="section level4">
|
|
<h4 id="documentation-23-6-1">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-23-6-1"></a></h4>
|
|
<ul><li>Updated description.</li>
|
|
<li>Look! A hex icon!</li>
|
|
<li>Heading for CRAN.</li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.4.1" id="redcapcast-2341">REDCapCAST 23.4.1<a class="anchor" aria-label="anchor" href="#redcapcast-2341"></a></h2>
|
|
<div class="section level4">
|
|
<h4 id="documentation-23-4-1">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-23-4-1"></a></h4>
|
|
<ul><li>Aiming for CRAN</li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.3.2" id="redcapcast-2332">REDCapCAST 23.3.2<a class="anchor" aria-label="anchor" href="#redcapcast-2332"></a></h2>
|
|
<div class="section level4">
|
|
<h4 id="documentation-23-3-2">Documentation:<a class="anchor" aria-label="anchor" href="#documentation-23-3-2"></a></h4>
|
|
<ul><li><p>Page added. Vignettes to follow.</p></li>
|
|
<li><p>GithubActions tests added and code coverage assessed. Badge galore..</p></li>
|
|
</ul></div>
|
|
</div>
|
|
<div class="section level2">
|
|
<h2 class="pkg-version" data-toc-text="23.3.1" id="redcapcast-2331">REDCapCAST 23.3.1<a class="anchor" aria-label="anchor" href="#redcapcast-2331"></a></h2>
|
|
<div class="section level4">
|
|
<h4 id="new-name-redcapcast-23-3-1">New name: REDCapCAST<a class="anchor" aria-label="anchor" href="#new-name-redcapcast-23-3-1"></a></h4>
|
|
<p>To reflect new functions and the limitation to only working in R, I have changed the naming of the fork, while still, of course, maintaining the status as a fork.</p>
|
|
<p>The versioning has moved to a monthly naming convention.</p>
|
|
<p>The main goal this package is to keep the option to only export a defined subset of the whole dataset from the REDCap server as is made possible through the <code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code> function, and combine it with the work put into the REDCapRITS package and the handling of longitudinal projects and/or projects with repeated instruments.</p>
|
|
</div>
|
|
<div class="section level4">
|
|
<h4 id="functions-23-3-1">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-3-1"></a></h4>
|
|
<ul><li><p><code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> <strong>NEW</strong>: this function is mainly an implementation of the combined use of <code>REDCapR::readcap_read()</code> and <code><a href="../reference/REDCap_split.html">REDCap_split()</a></code> to maintain the focused nature of <code>REDCapR::readcap_read()</code>, to only download the specified data. Also implements tests of valid form names and event names. The usual fall-back solution was to get all data.</p></li>
|
|
<li><p><code><a href="../reference/redcap_wider.html">redcap_wider()</a></code> <strong>NEW</strong>: this function pivots the long data frames from <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> using <code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">tidyr::pivot_wider()</a></code>.</p></li>
|
|
<li><p><code><a href="../reference/focused_metadata.html">focused_metadata()</a></code> <strong>NEW</strong>: a hidden helper function to enable a focused data acquisition approach to handle only a subset of metadata corresponding to the focused dataset.</p></li>
|
|
</ul></div>
|
|
<div class="section level4">
|
|
<h4 id="notes-23-3-1">Notes:<a class="anchor" aria-label="anchor" href="#notes-23-3-1"></a></h4>
|
|
<ul><li>metadata handling <strong>IMPROVED</strong>: improved handling of different column names in matadata (DataDictionary) from REDCap dependent on whether it is acquired thorugh the api og downloaded from the server.</li>
|
|
</ul></div>
|
|
</div>
|
|
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
|
</nav></aside></div>
|
|
|
|
|
|
<footer><div class="pkgdown-footer-left">
|
|
<p></p><p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
|
</div>
|
|
|
|
<div class="pkgdown-footer-right">
|
|
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
|
|
</div>
|
|
|
|
</footer></div>
|
|
|
|
|
|
|
|
|
|
|
|
</body></html>
|
|
|