utils::globalVariables(c("redcapcast_meta")) #' Data set to data dictionary function #' #' Migrated from stRoke ds2dd(). Fits better with the functionality of #' 'REDCapCAST' #' @param ds data set #' @param record.id name or column number of id variable, moved to first row of #' data dictionary, character of integer. Default is "record_id". #' @param form.name vector of form names, character string, length 1 or length #' equal to number of variables. Default is "basis". #' @param field.type vector of field types, character string, length 1 or length #' equal to number of variables. Default is "text. #' @param field.label vector of form names, character string, length 1 or length #' equal to number of variables. Default is NULL and is then identical to field #' names. #' @param include.column.names Flag to give detailed output including new #' column names for original data set for upload. #' @param metadata Metadata column names. Default is the included #' REDCapCAST::redcapcast_data. #' #' @return data.frame or list of data.frame and vector #' @export #' #' @examples #' redcapcast_data$record_id <- seq_len(nrow(redcapcast_data)) #' ds2dd(redcapcast_data, include.column.names=TRUE) ds2dd <- function(ds, record.id = "record_id", form.name = "basis", field.type = "text", field.label = NULL, include.column.names = FALSE, metadata = names(redcapcast_meta)) { dd <- data.frame(matrix(ncol = length(metadata), nrow = ncol(ds))) colnames(dd) <- metadata if (is.character(record.id) & !record.id %in% colnames(ds)) { stop("Provided record.id is not a variable name in provided data set.") } # renaming to lower case and substitute spaces with underscore field.name <- gsub(" ", "_", tolower(colnames(ds))) # handles both character and integer colsel <- colnames(ds) == colnames(ds[record.id]) if (summary(colsel)[3] != 1) { stop("Provided record.id has to be or refer to a uniquely named column.") } dd[, "field_name"] <- c(field.name[colsel], field.name[!colsel]) if (length(form.name) > 1 & length(form.name) != ncol(ds)) { stop( "Provided form.name should be of length 1 (value is reused) or equal length as number of variables in data set." ) } dd[, "form_name"] <- form.name if (length(field.type) > 1 & length(field.type) != ncol(ds)) { stop( "Provided field.type should be of length 1 (value is reused) or equal length as number of variables in data set." ) } dd[, "field_type"] <- field.type if (is.null(field.label)) { dd[, "field_label"] <- dd[, "field_name"] } else dd[, "field_label"] <- field.label if (include.column.names){ list("DataDictionary"=dd,"Column names"=field.name) } else dd }