/******************************************************************************** * * FILE: REDCap_split.sas * * VERSION: 0.0.0 * * PURPOSE: Take a REDCap dataset with multiple events and make into several * tables with primary and foreign keys * * AUTHOR: Paul W. Egeler, M.S., GStat * * DATE: 22JUN2017 * ******************************************************************************* * * INSTRUCTIONS: * * 1. Run the SAS code provided by REDCap to import the data * BUT COMMENT THIS LINE: * * format redcap_repeat_instrument redcap_repeat_instrument_.; * * 2. Download the data dictionary for your project. * 3. Run the macro definitions REDCAP_READ_DATA_DICT and REDCAP_SPLIT * * 3. Run the macro call for REDCAP_READ_DATA_DICT to load in the data dictionry. * This is necessary to split the tables correctly. * * 4. Run the macro call for REDCAP_SPLIT. You will have an output dataset for * your main table as well as for each repeating instrument. * ********************************************************************************/ %MACRO REDCAP_READ_DATA_DICT( DATA_DICTIONARY /* The file path for the data dictionary */ ); DATA REDCAP_DATA_DICTIONARY; LENGTH VAR_NAME $ 200 FORM_NAME $ 200 SECTION_HEADER $ 200 FIELD_TYPE $ 200 X1-X14 $ 2250; INFILE "&DATA_DICTIONARY" FIRSTOBS = 2 DSD DLM = "," LRECL=32767; INPUT VAR_NAME $ FORM_NAME $ SECTION_HEADER $ FIELD_TYPE $ X1-X14 $; IF FIELD_TYPE EQ "descriptive" THEN DELETE; DROP SECTION_HEADER X1-X14; RUN; %MEND REDCAP_READ_DATA_DICT; %MACRO REDCAP_SPLIT( DATA_DICTIONARY = REDCAP_DATA_DICTIONARY /* The name of the SAS dataset of the data dictionary */, DATA_SET = REDCAP/* The name of the SAS dataset created by REDCap */, KEY = RECORD_ID /* Variable that links base table with other tables */ ); PROC SQL NOPRINT; SELECT DISTINCT REDCAP_REPEAT_INSTRUMENT, "'"!!trim(REDCAP_REPEAT_INSTRUMENT)!!"'" AS INSTRUMENT_QUOTED INTO :INSTRUMENTS SEPARATED BY ' ', :INSTRUMENT_LIST SEPARATED BY ',' FROM &DATA_SET AS A WHERE REDCAP_REPEAT_INSTRUMENT GT ''; %LET N_SUBTABLES = &SQLOBS; %PUT INSTRUMENTS: %LEFT(&INSTRUMENTS); %PUT INSTRUMENT LIST: %LEFT(&INSTRUMENT_LIST); %PUT N SUBTABLES: %LEFT(&N_SUBTABLES); QUIT; %IF &N_SUBTABLES GT 0 %THEN %DO; PROC SQL NOPRINT; SELECT VAR_NAME INTO :VARS_BASE SEPARATED BY ' ' FROM &DATA_DICTIONARY. AS A WHERE FORM_NAME NOT IN (&INSTRUMENT_LIST); %put Base vars: &VARS_BASE; %DO I = 1 %TO &N_SUBTABLES; %LET INSTRUMENT_I = %SCAN(&INSTRUMENTS,&I,%STR( )); SELECT VAR_NAME INTO :VARS_&INSTRUMENT_I. SEPARATED BY ' ' FROM &DATA_DICTIONARY. AS A WHERE FORM_NAME EQ "&INSTRUMENT_I."; %put &INSTRUMENT_I. vars: &&VARS_&INSTRUMENT_I; %END; QUIT; DATA &DATA_SET._BASE (KEEP = &VARS_BASE); SET &DATA_SET; IF MISSING(REDCAP_REPEAT_INSTRUMENT); RUN; %DO I = 1 %TO &N_SUBTABLES; %LET INSTRUMENT_I = %SCAN(&INSTRUMENTS,&I,%STR( )); DATA &DATA_SET._&INSTRUMENT_I. (KEEP = &KEY redcap_repeat_instance &&VARS_&INSTRUMENT_I); SET &DATA_SET; IF REDCAP_REPEAT_INSTRUMENT EQ "&INSTRUMENT_I."; RUN; %END; %END; %ELSE %DO; %PUT THERE WERE NO REPEAT INSTRUMENTS IN THE DATASET %LEFT(&DATA_SET); %PUT NO ACTION WAS TAKEN; %END; %MEND REDCAP_SPLIT;