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404.html
@ -14,68 +14,54 @@
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<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="https://agdamsbo.github.io/REDCapCAST/apple-touch-icon-60x60.png">
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@ -1,55 +1,40 @@
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
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59
LICENSE.html
59
LICENSE.html
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<!DOCTYPE html>
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@ -249,7 +234,7 @@
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@ -83,7 +66,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
|
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
|
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<div class="d-none name"><code>Database-creation.Rmd</code></div>
|
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</div>
|
||||
|
||||
@ -557,6 +540,15 @@ datasets/spreadsheets securely in REDCap.</p>
|
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#mwlefoodfi .gt_indent_5 {
|
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text-indent: 25px;
|
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}
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#mwlefoodfi .katex-display {
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display: inline-flex !important;
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margin-bottom: 0.75em !important;
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}
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#mwlefoodfi div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
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<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
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<thead><tr class="gt_col_headings">
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@ -1285,6 +1277,15 @@ preserve as much information as possible.</p>
|
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#eexombwkke .gt_indent_5 {
|
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text-indent: 25px;
|
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}
|
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#eexombwkke .katex-display {
|
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display: inline-flex !important;
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margin-bottom: 0.75em !important;
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}
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#eexombwkke div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
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<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
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<thead><tr class="gt_col_headings">
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@ -1722,7 +1723,7 @@ upload: manual or through <code>REDCapR</code>.</p>
|
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<span><span class="op">)</span></span></code></pre></div>
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@ -1733,15 +1734,15 @@ upload: manual or through <code>REDCapR</code>.</p>
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@ -83,7 +66,7 @@
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<div class="d-none name"><code>Introduction.Rmd</code></div>
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</div>
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@ -539,6 +522,15 @@ demonstration of the functions.</p>
|
||||
#mwlefoodfi .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
|
||||
#mwlefoodfi .katex-display {
|
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display: inline-flex !important;
|
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margin-bottom: 0.75em !important;
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}
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|
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#mwlefoodfi div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
|
||||
height: 0px !important;
|
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}
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</style>
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<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
|
||||
<thead><tr class="gt_col_headings">
|
||||
@ -1506,6 +1498,15 @@ demonstration of the functions.</p>
|
||||
#eexombwkke .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
|
||||
#eexombwkke .katex-display {
|
||||
display: inline-flex !important;
|
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margin-bottom: 0.75em !important;
|
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}
|
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|
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#eexombwkke div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
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height: 0px !important;
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</style>
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<table class="table gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
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<thead><tr class="gt_col_headings">
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@ -1988,7 +1989,7 @@ approach.</p>
|
||||
<span><span class="co">#> $ new_event_complete_3_follow1: chr NA NA NA NA ...</span></span>
|
||||
<span><span class="co">#> $ new_event_complete_3_follow2: chr NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
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@ -83,7 +66,7 @@
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
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@ -51,9 +36,9 @@
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<img src="logo.png" class="logo" alt=""><h1>Authors and Citation</h1>
|
||||
</div>
|
||||
|
||||
<div class="section level2 citation">
|
||||
<div class="section level2">
|
||||
<h2>Authors</h2>
|
||||
|
||||
|
||||
<ul class="list-unstyled"><li>
|
||||
<p><strong>Andreas Gammelgaard Damsbo</strong>. Author, maintainer. <a href="https://orcid.org/0000-0002-7559-1154" target="orcid.widget" aria-label="ORCID" class="external-link"><span class="fab fa-orcid orcid" aria-hidden="true"></span></a>
|
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@ -64,23 +49,24 @@
|
||||
</li>
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</ul></div>
|
||||
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||||
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|
||||
<div class="section level2">
|
||||
<h2 id="citation">Citation</h2>
|
||||
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
|
||||
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
|
||||
|
||||
<p>Damsbo A, Egeler P (2024).
|
||||
<em>REDCapCAST: REDCap Castellated Data Handling</em>.
|
||||
R package version 24.6.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
|
||||
R package version 24.9.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
|
||||
</p>
|
||||
<pre>@Manual{,
|
||||
title = {REDCapCAST: REDCap Castellated Data Handling},
|
||||
author = {Andreas Gammelgaard Damsbo and Paul Egeler},
|
||||
year = {2024},
|
||||
note = {R package version 24.6.1, https://agdamsbo.github.io/REDCapCAST/},
|
||||
note = {R package version 24.9.1, https://agdamsbo.github.io/REDCapCAST/},
|
||||
url = {https://github.com/agdamsbo/REDCapCAST},
|
||||
}</pre>
|
||||
</div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -89,14 +75,14 @@ R package version 24.6.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https
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7
deps/headroom-0.11.0/jQuery.headroom.min.js
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vendored
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|
||||
/*!
|
||||
* headroom.js v0.9.4 - Give your page some headroom. Hide your header until you need it
|
||||
* Copyright (c) 2017 Nick Williams - http://wicky.nillia.ms/headroom.js
|
||||
* License: MIT
|
||||
*/
|
||||
|
||||
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|
||||
7
deps/search-1.0.0/autocomplete.jquery.min.js
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deps/search-1.0.0/mark.min.js
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index.html
69
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@ -5,7 +5,6 @@
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<meta charset="utf-8">
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<meta http-equiv="X-UA-Compatible" content="IE=edge">
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<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta name="description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See <https://github.com/pegeler/REDCapRITS>. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).">
|
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<title>REDCap Castellated Data Handling • REDCapCAST</title>
|
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|
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@ -15,63 +14,50 @@
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<meta name="description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See <https://github.com/pegeler/REDCapRITS>. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).">
|
||||
<meta property="og:description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See <https://github.com/pegeler/REDCapRITS>. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <doi:10.1016/j.jbi.2008.08.010>; Harris et al (2019) <doi:10.1016/j.jbi.2019.103208>).">
|
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|
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
|
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|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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<li><a class="dropdown-item" href="articles/Introduction.html">Introduction</a></li>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off">
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</div>
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</nav><div class="container template-home">
|
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<div class="row">
|
||||
@ -110,7 +96,8 @@
|
||||
<p>The package is available on CRAN. Install the latest version:</p>
|
||||
<pre><code><span><span class="fu"><a href="https://rdrr.io/r/utils/install.packages.html" class="external-link">install.packages</a></span><span class="op">(</span><span class="st">"REDCapCAST"</span><span class="op">)</span></span></code></pre>
|
||||
<p>Install the latest version directly from GitHub:</p>
|
||||
<pre><code><span><span class="fu">pak</span><span class="fu">::</span><span class="fu"><a href="https://pak.r-lib.org/reference/pak.html" class="external-link">pak</a></span><span class="op">(</span><span class="st">"agdamsbo/REDCapCAST"</span><span class="op">)</span></span></code></pre>
|
||||
<pre><code><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://remotes.r-lib.org" class="external-link">"remotes"</a></span><span class="op">)</span></span>
|
||||
<span><span class="fu">remotes</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"agdamsbo/REDCapCAST"</span><span class="op">)</span></span></code></pre>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="code-of-conduct">Code of Conduct<a class="anchor" aria-label="anchor" href="#code-of-conduct"></a>
|
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@ -182,15 +169,15 @@
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<div class="pkgdown-footer-right">
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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|
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14
katex-auto.js
Normal file
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katex-auto.js
Normal file
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|
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// https://github.com/jgm/pandoc/blob/29fa97ab96b8e2d62d48326e1b949a71dc41f47a/src/Text/Pandoc/Writers/HTML.hs#L332-L345
|
||||
document.addEventListener("DOMContentLoaded", function () {
|
||||
var mathElements = document.getElementsByClassName("math");
|
||||
var macros = [];
|
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for (var i = 0; i < mathElements.length; i++) {
|
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var texText = mathElements[i].firstChild;
|
||||
if (mathElements[i].tagName == "SPAN") {
|
||||
katex.render(texText.data, mathElements[i], {
|
||||
displayMode: mathElements[i].classList.contains("display"),
|
||||
throwOnError: false,
|
||||
macros: macros,
|
||||
fleqn: false
|
||||
});
|
||||
}}});
|
||||
85
lightswitch.js
Normal file
85
lightswitch.js
Normal file
@ -0,0 +1,85 @@
|
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|
||||
/*!
|
||||
* Color mode toggler for Bootstrap's docs (https://getbootstrap.com/)
|
||||
* Copyright 2011-2023 The Bootstrap Authors
|
||||
* Licensed under the Creative Commons Attribution 3.0 Unported License.
|
||||
* Updates for {pkgdown} by the {bslib} authors, also licensed under CC-BY-3.0.
|
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*/
|
||||
|
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const getStoredTheme = () => localStorage.getItem('theme')
|
||||
const setStoredTheme = theme => localStorage.setItem('theme', theme)
|
||||
|
||||
const getPreferredTheme = () => {
|
||||
const storedTheme = getStoredTheme()
|
||||
if (storedTheme) {
|
||||
return storedTheme
|
||||
}
|
||||
|
||||
return window.matchMedia('(prefers-color-scheme: dark)').matches ? 'dark' : 'light'
|
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}
|
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|
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const setTheme = theme => {
|
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if (theme === 'auto') {
|
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document.documentElement.setAttribute('data-bs-theme', (window.matchMedia('(prefers-color-scheme: dark)').matches ? 'dark' : 'light'))
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} else {
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document.documentElement.setAttribute('data-bs-theme', theme)
|
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}
|
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showActiveTheme(getPreferredTheme())
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document
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setTheme(getPreferredTheme());
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bsSetupThemeToggle();
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@ -1,57 +1,46 @@
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Changelog"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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<li class="active nav-item">
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<a class="nav-link" href="../news/index.html">Changelog</a>
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</nav><div class="container template-news">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
|
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<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
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</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 class="pkg-version" data-toc-text="24.9.1" id="redcapcast-2491">REDCapCAST 24.9.1<a class="anchor" aria-label="anchor" href="#redcapcast-2491"></a></h2>
|
||||
<p>Minor changes to pass tests and renv is out.</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 class="pkg-version" data-toc-text="24.6.1" id="redcapcast-2461">REDCapCAST 24.6.1<a class="anchor" aria-label="anchor" href="#redcapcast-2461"></a></h2><p class="text-muted">CRAN release: 2024-06-07</p>
|
||||
<div class="section level4">
|
||||
@ -154,7 +143,7 @@
|
||||
<ul><li>metadata handling <strong>IMPROVED</strong>: improved handling of different column names in matadata (DataDictionary) from REDCap dependent on whether it is acquired thorugh the api og downloaded from the server.</li>
|
||||
</ul></div>
|
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</div>
|
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -163,14 +152,14 @@
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</div>
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<div class="pkgdown-footer-right">
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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@ -152,5 +152,3 @@ async function searchFuse(query, callback) {
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});
|
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});
|
||||
})(window.jQuery || window.$)
|
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|
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|
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|
||||
@ -1,12 +1,11 @@
|
||||
pandoc: 3.1.11
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pkgdown: 2.0.9
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pkgdown: 2.1.0
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||||
pkgdown_sha: ~
|
||||
articles:
|
||||
Database-creation: Database-creation.html
|
||||
Introduction: Introduction.html
|
||||
Shiny-app: Shiny-app.html
|
||||
last_built: 2024-06-10T08:15Z
|
||||
last_built: 2024-09-05T13:40Z
|
||||
urls:
|
||||
reference: https://agdamsbo.github.io/REDCapCAST/reference
|
||||
article: https://agdamsbo.github.io/REDCapCAST/articles
|
||||
|
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|
||||
@ -1,59 +1,44 @@
|
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This will take output from a REDCap export and split it into a base table
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split REDCap repeating instruments table into multiple tables — REDCap_split • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split REDCap repeating instruments table into multiple tables — REDCap_split"><meta name="description" content="This will take output from a REDCap export and split it into a base table
|
||||
and child tables for each repeating instrument. Metadata
|
||||
is used to determine which fields should be included in each resultant table."><title>Split REDCap repeating instruments table into multiple tables — REDCap_split • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split REDCap repeating instruments table into multiple tables — REDCap_split"><meta property="og:description" content="This will take output from a REDCap export and split it into a base table
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is used to determine which fields should be included in each resultant table."><meta property="og:description" content="This will take output from a REDCap export and split it into a base table
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and child tables for each repeating instrument. Metadata
|
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is used to determine which fields should be included in each resultant table."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
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<div class="d-none name"><code>REDCap_split.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -75,37 +60,35 @@ is used to determine which fields should be included in each resultant table.</p
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>records</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
|
||||
<dd><p>Exported project records. May be a <code>data.frame</code>,
|
||||
<code>response</code>, or <code>character</code> vector containing JSON from an API
|
||||
call.</p></dd>
|
||||
|
||||
|
||||
<dt>metadata</dt>
|
||||
<dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
|
||||
<dd><p>Project metadata (the data dictionary). May be a
|
||||
<code>data.frame</code>, <code>response</code>, or <code>character</code> vector containing
|
||||
JSON from an API call.</p></dd>
|
||||
|
||||
|
||||
<dt>primary_table_name</dt>
|
||||
<dt id="arg-primary-table-name">primary_table_name<a class="anchor" aria-label="anchor" href="#arg-primary-table-name"></a></dt>
|
||||
<dd><p>Name given to the list element for the primary
|
||||
output table (as described in <em>README.md</em>). Ignored if
|
||||
<code>forms = 'all'</code>.</p></dd>
|
||||
|
||||
|
||||
<dt>forms</dt>
|
||||
<dt id="arg-forms">forms<a class="anchor" aria-label="anchor" href="#arg-forms"></a></dt>
|
||||
<dd><p>Indicate whether to create separate tables for repeating
|
||||
instruments only or for all forms.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>A list of <code>"data.frame"</code>s. The number of tables will differ
|
||||
depending on the <code>forms</code> option selected.</p>
|
||||
<p></p>
|
||||
<ul><li><p><code>'repeating'</code>: one base table and one or more
|
||||
<p>A list of <code>"data.frame"</code>s. The number of tables will differ
|
||||
depending on the <code>forms</code> option selected.</p><ul><li><p><code>'repeating'</code>: one base table and one or more
|
||||
tables for each repeating instrument.</p></li>
|
||||
<li><p><code>'all'</code>: a data.frame for each instrument, regardless of
|
||||
whether it is a repeating instrument or not.</p></li>
|
||||
@ -117,7 +100,7 @@ instruments only or for all forms.</p></dd>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span></span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
|
||||
<span class="r-in"><span><span class="co"># Using an API call -------------------------------------------------------</span></span></span>
|
||||
<span class="r-in"><span></span></span>
|
||||
<span class="r-in"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va">RCurl</span><span class="op">)</span></span></span>
|
||||
@ -172,10 +155,10 @@ instruments only or for all forms.</p></dd>
|
||||
<span class="r-in"><span><span class="co"># Split the tables</span></span></span>
|
||||
<span class="r-in"><span><span class="fu">REDCapRITS</span><span class="fu">::</span><span class="fu">REDCap_split</span><span class="op">(</span><span class="va">data</span>, <span class="va">metadata</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/getwd.html" class="external-link">setwd</a></span><span class="op">(</span><span class="va">old</span><span class="op">)</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span></span></span>
|
||||
<span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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</nav></aside></div>
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||||
|
||||
|
||||
@ -184,14 +167,14 @@ instruments only or for all forms.</p></dd>
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</div>
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<div class="pkgdown-footer-right">
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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@ -1,63 +1,48 @@
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Mimics case_when for list of regex patterns and values. Used for date/time
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>List-base regex case_when — case_match_regex_list • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="List-base regex case_when — case_match_regex_list"><meta name="description" content="Mimics case_when for list of regex patterns and values. Used for date/time
|
||||
validation generation from name vector. Like case_when, the matches are in
|
||||
order of priority.
|
||||
Primarily used in REDCapCAST to do data type coding from systematic variable
|
||||
naming."><title>List-base regex case_when — case_match_regex_list • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="List-base regex case_when — case_match_regex_list"><meta property="og:description" content="Mimics case_when for list of regex patterns and values. Used for date/time
|
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naming."><meta property="og:description" content="Mimics case_when for list of regex patterns and values. Used for date/time
|
||||
validation generation from name vector. Like case_when, the matches are in
|
||||
order of priority.
|
||||
Primarily used in REDCapCAST to do data type coding from systematic variable
|
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|
||||
<div class="d-none name"><code>case_match_regex_list.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -76,23 +61,23 @@ naming.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt>match.list</dt>
|
||||
<dt id="arg-match-list">match.list<a class="anchor" aria-label="anchor" href="#arg-match-list"></a></dt>
|
||||
<dd><p>list of case matches</p></dd>
|
||||
|
||||
|
||||
<dt>.default</dt>
|
||||
<dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
|
||||
<dd><p>Default value for non-matches. Default is NA.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>vector</p>
|
||||
<p>vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -104,7 +89,7 @@ naming.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "date_dmy" "time_hh_mm_ss" NA "time_hh_mm_ss"</span>
|
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</code></pre></div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>char2choice.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,27 +49,27 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt>char.split</dt>
|
||||
<dt id="arg-char-split">char.split<a class="anchor" aria-label="anchor" href="#arg-char-split"></a></dt>
|
||||
<dd><p>splitting character(s)</p></dd>
|
||||
|
||||
|
||||
<dt>raw</dt>
|
||||
<dt id="arg-raw">raw<a class="anchor" aria-label="anchor" href="#arg-raw"></a></dt>
|
||||
<dd><p>specific values. Can be used for options of same length.</p></dd>
|
||||
|
||||
|
||||
<dt>.default</dt>
|
||||
<dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
|
||||
<dd><p>default value for missing. Default is NA.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>vector</p>
|
||||
<p>vector</p>
|
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</div>
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<div class="section level2">
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@ -94,7 +79,7 @@
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<span class="r-out co"><span class="r-pr">#></span> [4] NA "1, what" </span>
|
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<img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>char2cond.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -70,31 +55,31 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>vector</p></dd>
|
||||
|
||||
|
||||
<dt>minor.split</dt>
|
||||
<dt id="arg-minor-split">minor.split<a class="anchor" aria-label="anchor" href="#arg-minor-split"></a></dt>
|
||||
<dd><p>minor split</p></dd>
|
||||
|
||||
|
||||
<dt>major.split</dt>
|
||||
<dt id="arg-major-split">major.split<a class="anchor" aria-label="anchor" href="#arg-major-split"></a></dt>
|
||||
<dd><p>major split</p></dd>
|
||||
|
||||
|
||||
<dt>major.sep</dt>
|
||||
<dt id="arg-major-sep">major.sep<a class="anchor" aria-label="anchor" href="#arg-major-sep"></a></dt>
|
||||
<dd><p>argument separation. Default is " or ".</p></dd>
|
||||
|
||||
|
||||
<dt>.default</dt>
|
||||
<dt id="arg--default">.default<a class="anchor" aria-label="anchor" href="#arg--default"></a></dt>
|
||||
<dd><p>default value for missing. Default is NA.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>vector</p>
|
||||
<p>vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -104,7 +89,7 @@
|
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<span class="r-in"></span>
|
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</code></pre></div>
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@ -1,59 +1,44 @@
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Stepwise removal on non-alphanumeric characters, trailing white space,
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>clean_redcap_name — clean_redcap_name • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="clean_redcap_name — clean_redcap_name"><meta name="description" content="Stepwise removal on non-alphanumeric characters, trailing white space,
|
||||
substitutes spaces for underscores and converts to lower case.
|
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Trying to make up for different naming conventions."><meta property="og:description" content="Stepwise removal on non-alphanumeric characters, trailing white space,
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substitutes spaces for underscores and converts to lower case.
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<img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1>
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<div class="d-none name"><code>clean_redcap_name.Rd</code></div>
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||||
@ -70,18 +55,18 @@ Trying to make up for different naming conventions.</p>
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||||
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>x</dt>
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||||
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<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
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<dd><p>vector or data frame for cleaning</p></dd>
|
||||
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||||
</dl></div>
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<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>vector or data frame, same format as input</p>
|
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<p>vector or data frame, same format as input</p>
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</nav><div class="container template-reference-topic">
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<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>create_html_table.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,19 +49,19 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>text</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-text">text<a class="anchor" aria-label="anchor" href="#arg-text"></a></dt>
|
||||
<dd><p>descriptive text</p></dd>
|
||||
|
||||
|
||||
<dt>variable</dt>
|
||||
<dt id="arg-variable">variable<a class="anchor" aria-label="anchor" href="#arg-variable"></a></dt>
|
||||
<dd><p>variable to pipe</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
||||
<p>character vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -88,7 +73,7 @@
|
||||
<span class="r-in"><span><span class="co"># create_html_table(text = c("CPR nummer","Word"), variable = c("[cpr][1]", "[cpr][2]", "[test]"))</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
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|
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@ -97,14 +82,14 @@
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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|
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|
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@ -1,59 +1,44 @@
|
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Metadata can be added by editing the data dictionary of a project in the
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initial design phase. If you want to later add new instruments, this can be
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used to add instrument(s) to a project in production."><title>Create zips file with necessary content based on data set — create_instrument_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create zips file with necessary content based on data set — create_instrument_meta"><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
used to add instrument(s) to a project in production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
|
||||
initial design phase. If you want to later add new instruments, this can be
|
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used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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used to add instrument(s) to a project in production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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<main id="main" class="col-md-9"><div class="page-header">
|
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<img src="../logo.png" class="logo" alt=""><h1>Create zips file with necessary content based on data set</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small>
|
||||
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -70,16 +55,18 @@ used to add instrument(s) to a project in production.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>metadata for the relevant instrument.
|
||||
Could be from `ds2dd_detailed()`</p></dd>
|
||||
|
||||
|
||||
<dt>dir</dt>
|
||||
<dt id="arg-dir">dir<a class="anchor" aria-label="anchor" href="#arg-dir"></a></dt>
|
||||
<dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd>
|
||||
|
||||
|
||||
<dt>record.id</dt>
|
||||
<dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
|
||||
<dd><p>flag to omit the first row of the data dictionary assuming
|
||||
this is the record_id field which should not be included in the instrument.
|
||||
Default is TRUE.</p></dd>
|
||||
@ -87,9 +74,7 @@ Default is TRUE.</p></dd>
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list</p>
|
||||
<p>list</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -112,7 +97,7 @@ Default is TRUE.</p></dd>
|
||||
<span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span>
|
||||
</code></pre></div>
|
||||
</div>
|
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
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</nav></aside></div>
|
||||
|
||||
|
||||
@ -121,14 +106,14 @@ Default is TRUE.</p></dd>
|
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@ -1,55 +1,40 @@
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
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<div class="d-none name"><code>d2w.Rd</code></div>
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</div>
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@ -64,27 +49,27 @@
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>x</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
|
||||
<dd><p>data. Handle vectors, data.frames and lists</p></dd>
|
||||
|
||||
|
||||
<dt>lang</dt>
|
||||
<dt id="arg-lang">lang<a class="anchor" aria-label="anchor" href="#arg-lang"></a></dt>
|
||||
<dd><p>language. Danish (da) and English (en), Default is "en"</p></dd>
|
||||
|
||||
|
||||
<dt>neutrum</dt>
|
||||
<dt id="arg-neutrum">neutrum<a class="anchor" aria-label="anchor" href="#arg-neutrum"></a></dt>
|
||||
<dd><p>for numbers depending on counted word</p></dd>
|
||||
|
||||
|
||||
<dt>everything</dt>
|
||||
<dt id="arg-everything">everything<a class="anchor" aria-label="anchor" href="#arg-everything"></a></dt>
|
||||
<dd><p>flag to also split numbers >9 to single digits</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>returns characters in same format as input</p>
|
||||
<p>returns characters in same format as input</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -115,7 +100,7 @@
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||||
<span class="r-in"><span></span></span>
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</code></pre></div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -1,65 +1,50 @@
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Works well with `project.aid::docx2list()`.
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd"><meta name="description" content="Works well with `project.aid::docx2list()`.
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Allows defining a database in a text document (see provided template) for
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an easier to use data base creation. This approach allows easier
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collaboration when defining the database. The generic case is a data frame
|
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with variable names as values in a column. This is a format like the REDCap
|
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data dictionary, but gives a few options for formatting."><title>Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd"><meta property="og:description" content="Works well with `project.aid::docx2list()`.
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data dictionary, but gives a few options for formatting."><meta property="og:description" content="Works well with `project.aid::docx2list()`.
|
||||
Allows defining a database in a text document (see provided template) for
|
||||
an easier to use data base creation. This approach allows easier
|
||||
collaboration when defining the database. The generic case is a data frame
|
||||
with variable names as values in a column. This is a format like the REDCap
|
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data dictionary, but gives a few options for formatting."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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data dictionary, but gives a few options for formatting."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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<img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>doc2dd.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -94,75 +79,75 @@ data dictionary, but gives a few options for formatting.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>tibble or data.frame with all variable names in one column</p></dd>
|
||||
|
||||
|
||||
<dt>instrument.name</dt>
|
||||
<dt id="arg-instrument-name">instrument.name<a class="anchor" aria-label="anchor" href="#arg-instrument-name"></a></dt>
|
||||
<dd><p>character vector length one. Instrument name.</p></dd>
|
||||
|
||||
|
||||
<dt>col.variables</dt>
|
||||
<dt id="arg-col-variables">col.variables<a class="anchor" aria-label="anchor" href="#arg-col-variables"></a></dt>
|
||||
<dd><p>variable names column (default = 1), allows dplyr
|
||||
subsetting</p></dd>
|
||||
|
||||
|
||||
<dt>list.datetime.format</dt>
|
||||
<dt id="arg-list-datetime-format">list.datetime.format<a class="anchor" aria-label="anchor" href="#arg-list-datetime-format"></a></dt>
|
||||
<dd><p>formatting for date/time detection.
|
||||
See `case_match_regex_list()`</p></dd>
|
||||
|
||||
|
||||
<dt>col.description</dt>
|
||||
<dt id="arg-col-description">col.description<a class="anchor" aria-label="anchor" href="#arg-col-description"></a></dt>
|
||||
<dd><p>descriptions column, allows dplyr
|
||||
subsetting. If empty, variable names will be used.</p></dd>
|
||||
|
||||
|
||||
<dt>col.condition</dt>
|
||||
<dt id="arg-col-condition">col.condition<a class="anchor" aria-label="anchor" href="#arg-col-condition"></a></dt>
|
||||
<dd><p>conditions for branching column, allows dplyr
|
||||
subsetting. See `char2cond()`.</p></dd>
|
||||
|
||||
|
||||
<dt>col.subheader</dt>
|
||||
<dt id="arg-col-subheader">col.subheader<a class="anchor" aria-label="anchor" href="#arg-col-subheader"></a></dt>
|
||||
<dd><p>sub-header column, allows dplyr subsetting.
|
||||
See `format_subheader()`.</p></dd>
|
||||
|
||||
|
||||
<dt>subheader.tag</dt>
|
||||
<dt id="arg-subheader-tag">subheader.tag<a class="anchor" aria-label="anchor" href="#arg-subheader-tag"></a></dt>
|
||||
<dd><p>formatting tag. Default is "h2"</p></dd>
|
||||
|
||||
|
||||
<dt>condition.minor.sep</dt>
|
||||
<dt id="arg-condition-minor-sep">condition.minor.sep<a class="anchor" aria-label="anchor" href="#arg-condition-minor-sep"></a></dt>
|
||||
<dd><p>condition split minor. See `char2cond()`.
|
||||
Default is ",".</p></dd>
|
||||
|
||||
|
||||
<dt>condition.major.sep</dt>
|
||||
<dt id="arg-condition-major-sep">condition.major.sep<a class="anchor" aria-label="anchor" href="#arg-condition-major-sep"></a></dt>
|
||||
<dd><p>condition split major. See `char2cond()`.
|
||||
Default is ";".</p></dd>
|
||||
|
||||
|
||||
<dt>col.calculation</dt>
|
||||
<dt id="arg-col-calculation">col.calculation<a class="anchor" aria-label="anchor" href="#arg-col-calculation"></a></dt>
|
||||
<dd><p>calculations column. Has to be written exact.
|
||||
Character vector.</p></dd>
|
||||
|
||||
|
||||
<dt>col.choices</dt>
|
||||
<dt id="arg-col-choices">col.choices<a class="anchor" aria-label="anchor" href="#arg-col-choices"></a></dt>
|
||||
<dd><p>choices column. See `char2choice()`.</p></dd>
|
||||
|
||||
|
||||
<dt>choices.char.sep</dt>
|
||||
<dt id="arg-choices-char-sep">choices.char.sep<a class="anchor" aria-label="anchor" href="#arg-choices-char-sep"></a></dt>
|
||||
<dd><p>choices split. See `char2choice()`. Default is "/".</p></dd>
|
||||
|
||||
|
||||
<dt>missing.default</dt>
|
||||
<dt id="arg-missing-default">missing.default<a class="anchor" aria-label="anchor" href="#arg-missing-default"></a></dt>
|
||||
<dd><p>value for missing fields. Default is NA.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>tibble or data.frame (same as data)</p>
|
||||
<p>tibble or data.frame (same as data)</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -177,7 +162,7 @@ Character vector.</p></dd>
|
||||
<span class="r-in"></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
@ -186,14 +171,14 @@ Character vector.</p></dd>
|
||||
</div>
|
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|
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<div class="pkgdown-footer-right">
|
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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|
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|
||||
|
||||
@ -1,57 +1,42 @@
|
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<!DOCTYPE html>
|
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|
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for a more advanced function."><title>(DEPRECATED) Data set to data dictionary function — ds2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="(DEPRECATED) Data set to data dictionary function — ds2dd"><meta property="og:description" content="Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
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|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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</ul></li>
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<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
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<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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</nav><div class="container template-reference-topic">
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<div class="row">
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||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd.R" class="external-link"><code>R/ds2dd.R</code></a></small>
|
||||
<div class="d-none name"><code>ds2dd.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -75,46 +60,46 @@ for a more advanced function.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>ds</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-ds">ds<a class="anchor" aria-label="anchor" href="#arg-ds"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>record.id</dt>
|
||||
<dt id="arg-record-id">record.id<a class="anchor" aria-label="anchor" href="#arg-record-id"></a></dt>
|
||||
<dd><p>name or column number of id variable, moved to first row of
|
||||
data dictionary, character of integer. Default is "record_id".</p></dd>
|
||||
|
||||
|
||||
<dt>form.name</dt>
|
||||
<dt id="arg-form-name">form.name<a class="anchor" aria-label="anchor" href="#arg-form-name"></a></dt>
|
||||
<dd><p>vector of form names, character string, length 1 or length
|
||||
equal to number of variables. Default is "basis".</p></dd>
|
||||
|
||||
|
||||
<dt>field.type</dt>
|
||||
<dt id="arg-field-type">field.type<a class="anchor" aria-label="anchor" href="#arg-field-type"></a></dt>
|
||||
<dd><p>vector of field types, character string, length 1 or length
|
||||
equal to number of variables. Default is "text.</p></dd>
|
||||
|
||||
|
||||
<dt>field.label</dt>
|
||||
<dt id="arg-field-label">field.label<a class="anchor" aria-label="anchor" href="#arg-field-label"></a></dt>
|
||||
<dd><p>vector of form names, character string, length 1 or length
|
||||
equal to number of variables. Default is NULL and is then identical to field
|
||||
names.</p></dd>
|
||||
|
||||
|
||||
<dt>include.column.names</dt>
|
||||
<dt id="arg-include-column-names">include.column.names<a class="anchor" aria-label="anchor" href="#arg-include-column-names"></a></dt>
|
||||
<dd><p>Flag to give detailed output including new
|
||||
column names for original data set for upload.</p></dd>
|
||||
|
||||
|
||||
<dt>metadata</dt>
|
||||
<dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
|
||||
<dd><p>Metadata column names. Default is the included
|
||||
REDCapCAST::metadata_names.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>data.frame or list of data.frame and vector</p>
|
||||
<p>data.frame or list of data.frame and vector</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
|
||||
@ -294,7 +279,7 @@ REDCapCAST::metadata_names.</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
@ -303,14 +288,14 @@ REDCapCAST::metadata_names.</p></dd>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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|
||||
</footer></div>
|
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|
||||
|
||||
|
||||
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|
||||
</body></html>
|
||||
|
||||
|
||||
@ -1,55 +1,40 @@
|
||||
<!DOCTYPE html>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
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</nav><div class="container template-reference-topic">
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<div class="row">
|
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<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -79,84 +64,84 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data frame</p></dd>
|
||||
|
||||
|
||||
<dt>add.auto.id</dt>
|
||||
<dt id="arg-add-auto-id">add.auto.id<a class="anchor" aria-label="anchor" href="#arg-add-auto-id"></a></dt>
|
||||
<dd><p>flag to add id column</p></dd>
|
||||
|
||||
|
||||
<dt>date.format</dt>
|
||||
<dt id="arg-date-format">date.format<a class="anchor" aria-label="anchor" href="#arg-date-format"></a></dt>
|
||||
<dd><p>date format, character string. ymd/dmy/mdy. dafault is
|
||||
dmy.</p></dd>
|
||||
|
||||
|
||||
<dt>form.name</dt>
|
||||
<dt id="arg-form-name">form.name<a class="anchor" aria-label="anchor" href="#arg-form-name"></a></dt>
|
||||
<dd><p>manually specify form name(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and "data" is used.</p></dd>
|
||||
|
||||
|
||||
<dt>form.sep</dt>
|
||||
<dt id="arg-form-sep">form.sep<a class="anchor" aria-label="anchor" href="#arg-form-sep"></a></dt>
|
||||
<dd><p>If supplied dataset has form names as suffix or prefix to the
|
||||
column/variable names, the seperator can be specified. If supplied, the
|
||||
form.sep is ignored. Default is NULL.</p></dd>
|
||||
|
||||
|
||||
<dt>form.prefix</dt>
|
||||
<dt id="arg-form-prefix">form.prefix<a class="anchor" aria-label="anchor" href="#arg-form-prefix"></a></dt>
|
||||
<dd><p>Flag to set if form is prefix (TRUE) or suffix (FALSE) to
|
||||
the column names. Assumes all columns have pre- or suffix if specified.</p></dd>
|
||||
|
||||
|
||||
<dt>field.type</dt>
|
||||
<dt id="arg-field-type">field.type<a class="anchor" aria-label="anchor" href="#arg-field-type"></a></dt>
|
||||
<dd><p>manually specify field type(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and "text" is used for everything but factors,
|
||||
which wil get "radio".</p></dd>
|
||||
|
||||
|
||||
<dt>field.label</dt>
|
||||
<dt id="arg-field-label">field.label<a class="anchor" aria-label="anchor" href="#arg-field-label"></a></dt>
|
||||
<dd><p>manually specify field label(s). Vector of length 1 or
|
||||
ncol(data). Default is NULL and colnames(data) is used or attribute
|
||||
`field.label.attr` for haven_labelled data set (imported .dta file with
|
||||
`haven::read_dta()`).</p></dd>
|
||||
|
||||
|
||||
<dt>field.label.attr</dt>
|
||||
<dt id="arg-field-label-attr">field.label.attr<a class="anchor" aria-label="anchor" href="#arg-field-label-attr"></a></dt>
|
||||
<dd><p>attribute name for named labels for haven_labelled
|
||||
data set (imported .dta file with `haven::read_dta()`. Default is "label"</p></dd>
|
||||
|
||||
|
||||
<dt>field.validation</dt>
|
||||
<dt id="arg-field-validation">field.validation<a class="anchor" aria-label="anchor" href="#arg-field-validation"></a></dt>
|
||||
<dd><p>manually specify field validation(s). Vector of
|
||||
length 1 or ncol(data). Default is NULL and `levels()` are used for factors
|
||||
or attribute `factor.labels.attr` for haven_labelled data set (imported .dta
|
||||
file with `haven::read_dta()`).</p></dd>
|
||||
|
||||
|
||||
<dt>metadata</dt>
|
||||
<dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
|
||||
<dd><p>redcap metadata headings. Default is
|
||||
REDCapCAST:::metadata_names.</p></dd>
|
||||
|
||||
|
||||
<dt>validate.time</dt>
|
||||
<dt id="arg-validate-time">validate.time<a class="anchor" aria-label="anchor" href="#arg-validate-time"></a></dt>
|
||||
<dd><p>Flag to validate guessed time columns</p></dd>
|
||||
|
||||
|
||||
<dt>time.var.sel.pos</dt>
|
||||
<dt id="arg-time-var-sel-pos">time.var.sel.pos<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-pos"></a></dt>
|
||||
<dd><p>Positive selection regex string passed to
|
||||
`gues_time_only_filter()` as sel.pos.</p></dd>
|
||||
|
||||
|
||||
<dt>time.var.sel.neg</dt>
|
||||
<dt id="arg-time-var-sel-neg">time.var.sel.neg<a class="anchor" aria-label="anchor" href="#arg-time-var-sel-neg"></a></dt>
|
||||
<dd><p>Negative selection regex string passed to
|
||||
`gues_time_only_filter()` as sel.neg.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list of length 2</p>
|
||||
<p>list of length 2</p>
|
||||
</div>
|
||||
<div class="section level2">
|
||||
<h2 id="details">Details<a class="anchor" aria-label="anchor" href="#details"></a></h2>
|
||||
@ -414,7 +399,7 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
@ -423,14 +408,14 @@ Please, do always inspect the data dictionary before upload.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
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|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
|
||||
@ -1,55 +1,40 @@
|
||||
<!DOCTYPE html>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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</ul></div>
|
||||
|
||||
|
||||
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||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
|
||||
<div class="d-none name"><code>easy_redcap.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,31 +49,31 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>project.name</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-project-name">project.name<a class="anchor" aria-label="anchor" href="#arg-project-name"></a></dt>
|
||||
<dd><p>The name of the current project (for key storage with
|
||||
`keyring::key_set()`, using the default keyring)</p></dd>
|
||||
|
||||
|
||||
<dt>widen.data</dt>
|
||||
<dt id="arg-widen-data">widen.data<a class="anchor" aria-label="anchor" href="#arg-widen-data"></a></dt>
|
||||
<dd><p>argument to widen the exported data</p></dd>
|
||||
|
||||
|
||||
<dt>uri</dt>
|
||||
<dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
|
||||
<dd><p>REDCap database API uri</p></dd>
|
||||
|
||||
|
||||
<dt>...</dt>
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>arguments passed on to `REDCapCAST::read_redcap_tables()`</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>data.frame or list depending on widen.data</p>
|
||||
<p>data.frame or list depending on widen.data</p>
|
||||
</div>
|
||||
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
@ -97,14 +82,14 @@
|
||||
</div>
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<div class="pkgdown-footer-right">
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|
||||
@ -1,55 +1,40 @@
|
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<img src="../logo.png" class="logo" alt=""><h1>Helper to import files correctly</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>file_extension.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,15 +49,15 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>filenames</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-filenames">filenames<a class="anchor" aria-label="anchor" href="#arg-filenames"></a></dt>
|
||||
<dd><p>file names</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
||||
<p>character vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -83,7 +68,7 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] "ks" "" </span>
|
||||
</code></pre></div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -1,55 +1,40 @@
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<div class="d-none name"><code>focused_metadata.Rd</code></div>
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@ -64,22 +49,22 @@
|
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<div class="section level2">
|
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>metadata</dt>
|
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|
||||
<dl><dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
|
||||
<dd><p>A dataframe containing metadata</p></dd>
|
||||
|
||||
|
||||
<dt>vars_in_data</dt>
|
||||
<dt id="arg-vars-in-data">vars_in_data<a class="anchor" aria-label="anchor" href="#arg-vars-in-data"></a></dt>
|
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<dd><p>Vector of variable names in the dataset</p></dd>
|
||||
|
||||
</dl></div>
|
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<div class="section level2">
|
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>A dataframe containing metadata for the variables in the dataset</p>
|
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<p>A dataframe containing metadata for the variables in the dataset</p>
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>format_subheader.Rd</code></div>
|
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</div>
|
||||
|
||||
@ -64,19 +49,19 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>character vector</p></dd>
|
||||
|
||||
|
||||
<dt>tag</dt>
|
||||
<dt id="arg-tag">tag<a class="anchor" aria-label="anchor" href="#arg-tag"></a></dt>
|
||||
<dd><p>character vector length 1</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
||||
<p>character vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -85,7 +70,7 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> <div class="rich-text-field-label"><h2>Instrument header</h2></div></span>
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</code></pre></div>
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<img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
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<div class="d-none name"><code>get_api_key.Rd</code></div>
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@ -64,18 +49,18 @@
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>key.name</dt>
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||||
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||||
<dl><dt id="arg-key-name">key.name<a class="anchor" aria-label="anchor" href="#arg-key-name"></a></dt>
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||||
<dd><p>character vector of key name</p></dd>
|
||||
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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||||
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||||
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||||
<p>character vector</p>
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<p>character vector</p>
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@ -84,14 +69,14 @@
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<img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<div class="d-none name"><code>get_id_name.Rd</code></div>
|
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|
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|
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@ -64,18 +49,18 @@
|
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|
||||
<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>data</dt>
|
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|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
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<dd><p>data frame or list</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
||||
<p>character vector</p>
|
||||
</div>
|
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Try at determining which are true time only variables — guess_time_only_filter • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Try at determining which are true time only variables — guess_time_only_filter"><meta name="description" content='This is just a try at guessing data type based on data class and column names
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hoping for a tiny bit of naming consistency. R does not include a time-only
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data format natively, so the "hms" class from `readr` is used. This
|
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has to be converted to character class before REDCap upload.'><title>Try at determining which are true time only variables — guess_time_only_filter • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Try at determining which are true time only variables — guess_time_only_filter"><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
|
||||
has to be converted to character class before REDCap upload.'><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
|
||||
hoping for a tiny bit of naming consistency. R does not include a time-only
|
||||
data format natively, so the "hms" class from `readr` is used. This
|
||||
has to be converted to character class before REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -78,27 +63,27 @@ has to be converted to character class before REDCap upload.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>validate</dt>
|
||||
<dt id="arg-validate">validate<a class="anchor" aria-label="anchor" href="#arg-validate"></a></dt>
|
||||
<dd><p>flag to output validation data. Will output list.</p></dd>
|
||||
|
||||
|
||||
<dt>sel.pos</dt>
|
||||
<dt id="arg-sel-pos">sel.pos<a class="anchor" aria-label="anchor" href="#arg-sel-pos"></a></dt>
|
||||
<dd><p>Positive selection regex string</p></dd>
|
||||
|
||||
|
||||
<dt>sel.neg</dt>
|
||||
<dt id="arg-sel-neg">sel.neg<a class="anchor" aria-label="anchor" href="#arg-sel-neg"></a></dt>
|
||||
<dd><p>Negative selection regex string</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector or list depending on `validate` flag.</p>
|
||||
<p>character vector or list depending on `validate` flag.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -144,7 +129,7 @@ has to be converted to character class before REDCap upload.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> </span>
|
||||
</code></pre></div>
|
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</div>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
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</nav></aside></div>
|
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@ -153,14 +138,14 @@ has to be converted to character class before REDCap upload.</p>
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<img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<div class="d-none name"><code>hms2character.Rd</code></div>
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@ -64,15 +49,15 @@
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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<p>data.frame or tibble</p>
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<p>data.frame or tibble</p>
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<div class="section level2">
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@ -81,7 +66,7 @@
|
||||
<span class="r-in"><span><span class="co">## data |> time_only_correction() |> hms2character()</span></span></span>
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</code></pre></div>
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||||
<a class="nav-link" href="../reference/index.html">Reference</a>
|
||||
</li>
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
||||
<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a>
|
||||
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
||||
<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../news/index.html">Changelog</a>
|
||||
</li>
|
||||
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
|
||||
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
|
||||
</ul></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
|
||||
<div class="d-none name"><code>html_tag_wrap.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,23 +49,23 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>character vector</p></dd>
|
||||
|
||||
|
||||
<dt>tag</dt>
|
||||
<dt id="arg-tag">tag<a class="anchor" aria-label="anchor" href="#arg-tag"></a></dt>
|
||||
<dd><p>character vector length 1</p></dd>
|
||||
|
||||
|
||||
<dt>extra</dt>
|
||||
<dt id="arg-extra">extra<a class="anchor" aria-label="anchor" href="#arg-extra"></a></dt>
|
||||
<dd><p>character vector</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
||||
<p>character vector</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -91,7 +76,7 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> <h2>Titel</h2></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||
</nav></aside></div>
|
||||
|
||||
|
||||
@ -100,14 +85,14 @@
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
|
||||
@ -1,285 +1,314 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Function reference • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Function reference"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
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<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]--></head><body>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Package index"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
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<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container">
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
|
||||
|
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|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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<span class="navbar-toggler-icon"></span>
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</button>
|
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<div id="navbar" class="collapse navbar-collapse ms-3">
|
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<ul class="navbar-nav me-auto"><li class="active nav-item">
|
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<a class="nav-link" href="../reference/index.html">Reference</a>
|
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</li>
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<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
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<li class="nav-item dropdown">
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<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
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<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a>
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<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
||||
<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
|
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</div>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../news/index.html">Changelog</a>
|
||||
</li>
|
||||
</ul><form class="form-inline my-2 my-lg-0" role="search">
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
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<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
</li>
|
||||
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
|
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<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
|
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<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
|
||||
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
|
||||
</ul></li>
|
||||
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
|
||||
</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
|
||||
<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
|
||||
<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
|
||||
</ul></div>
|
||||
|
||||
|
||||
|
||||
</div>
|
||||
</nav><div class="container template-reference-index">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Function reference</h1>
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Package index</h1>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="all-functions">All functions<a class="anchor" aria-label="anchor" href="#all-functions"></a></h2>
|
||||
|
||||
|
||||
|
||||
|
||||
</div><div id="" class="section level2">
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</div><div class="section level2">
|
||||
|
||||
|
||||
|
||||
|
||||
<dl><dt>
|
||||
|
||||
<code><a href="REDCap_split.html">REDCap_split()</a></code>
|
||||
|
||||
<code><a href="REDCap_split.html">REDCap_split()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Split REDCap repeating instruments table into multiple tables</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
|
||||
|
||||
<code><a href="case_match_regex_list.html">case_match_regex_list()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>List-base regex case_when</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="char2choice.html">char2choice()</a></code>
|
||||
|
||||
<code><a href="char2choice.html">char2choice()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Simple function to generate REDCap choices from character vector</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="char2cond.html">char2cond()</a></code>
|
||||
|
||||
<code><a href="char2cond.html">char2cond()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Simple function to generate REDCap branching logic from character vector</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
|
||||
|
||||
<code><a href="clean_redcap_name.html">clean_redcap_name()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>clean_redcap_name</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="create_html_table.html">create_html_table()</a></code>
|
||||
|
||||
<code><a href="create_html_table.html">create_html_table()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create two-column HTML table for data piping in REDCap instruments</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
|
||||
|
||||
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Create zips file with necessary content based on data set</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="d2w.html">d2w()</a></code>
|
||||
|
||||
<code><a href="d2w.html">d2w()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Convert single digits to words</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="doc2dd.html">doc2dd()</a></code>
|
||||
|
||||
<code><a href="doc2dd.html">doc2dd()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Doc table to data dictionary - EARLY, DOCS MISSING</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="ds2dd.html">ds2dd()</a></code>
|
||||
|
||||
<code><a href="ds2dd.html">ds2dd()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>(DEPRECATED) Data set to data dictionary function</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code>
|
||||
|
||||
<code><a href="ds2dd_detailed.html">ds2dd_detailed()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Extract data from stata file for data dictionary</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="easy_redcap.html">easy_redcap()</a></code>
|
||||
|
||||
<code><a href="easy_redcap.html">easy_redcap()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Secure API key storage and data acquisition in one</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="file_extension.html">file_extension()</a></code>
|
||||
|
||||
<code><a href="file_extension.html">file_extension()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Helper to import files correctly</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="focused_metadata.html">focused_metadata()</a></code>
|
||||
|
||||
<code><a href="focused_metadata.html">focused_metadata()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>focused_metadata</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="format_subheader.html">format_subheader()</a></code>
|
||||
|
||||
<code><a href="format_subheader.html">format_subheader()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Sub-header formatting wrapper</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="get_api_key.html">get_api_key()</a></code>
|
||||
|
||||
<code><a href="get_api_key.html">get_api_key()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Retrieve project API key if stored, if not, set and retrieve</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="get_id_name.html">get_id_name()</a></code>
|
||||
|
||||
<code><a href="get_id_name.html">get_id_name()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Get the id name</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code>
|
||||
|
||||
<code><a href="guess_time_only_filter.html">guess_time_only_filter()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Try at determining which are true time only variables</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="hms2character.html">hms2character()</a></code>
|
||||
|
||||
<code><a href="hms2character.html">hms2character()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Change "hms" to "character" for REDCap upload.</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
|
||||
|
||||
<code><a href="html_tag_wrap.html">html_tag_wrap()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Simple html tag wrapping for REDCap text formatting</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="is_missing.html">is_missing()</a></code>
|
||||
|
||||
<code><a href="is_missing.html">is_missing()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Multi missing check</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
|
||||
|
||||
<code><a href="is_repeated_longitudinal.html">is_repeated_longitudinal()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Test if repeatable or longitudinal</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="mark_complete.html">mark_complete()</a></code>
|
||||
|
||||
<code><a href="mark_complete.html">mark_complete()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Completion marking based on completed upload</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="match_fields_to_form.html">match_fields_to_form()</a></code>
|
||||
|
||||
<code><a href="match_fields_to_form.html">match_fields_to_form()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Match fields to forms</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="mtcars_redcap.html">mtcars_redcap</a></code>
|
||||
|
||||
<code><a href="mtcars_redcap.html">mtcars_redcap</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>mtcars dataset slightly modified to use for Shiny app upload demonstration</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="process_user_input.html">process_user_input()</a></code>
|
||||
|
||||
<code><a href="process_user_input.html">process_user_input()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>User input processing</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="process_user_input.character.html">process_user_input(<i><character></i>)</a></code>
|
||||
|
||||
<code><a href="process_user_input.character.html">process_user_input(<i><character></i>)</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>User input processing character</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="process_user_input.data.frame.html">process_user_input(<i><data.frame></i>)</a></code>
|
||||
|
||||
<code><a href="process_user_input.data.frame.html">process_user_input(<i><data.frame></i>)</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>User input processing data.frame</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="process_user_input.default.html">process_user_input(<i><default></i>)</a></code>
|
||||
|
||||
<code><a href="process_user_input.default.html">process_user_input(<i><default></i>)</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>User input processing default</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="process_user_input.response.html">process_user_input(<i><response></i>)</a></code>
|
||||
|
||||
<code><a href="process_user_input.response.html">process_user_input(<i><response></i>)</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>User input processing response</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="read_input.html">read_input()</a></code>
|
||||
|
||||
<code><a href="read_input.html">read_input()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Flexible file import based on extension</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
|
||||
|
||||
<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Convenience function to download complete instrument, using token storage in keyring.</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
|
||||
|
||||
<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Download REDCap data</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="redcap_wider.html">redcap_wider()</a></code>
|
||||
|
||||
<code><a href="redcap_wider.html">redcap_wider()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Redcap Wider</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="redcapcast_data.html">redcapcast_data</a></code>
|
||||
|
||||
<code><a href="redcapcast_data.html">redcapcast_data</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Data set for demonstration</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
|
||||
|
||||
<code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>REDCap metadata from data base</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="replace_curly_quote.html">replace_curly_quote()</a></code>
|
||||
|
||||
<code><a href="replace_curly_quote.html">replace_curly_quote()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Replace curly apostrophes and quotes from word</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="sanitize_split.html">sanitize_split()</a></code>
|
||||
|
||||
<code><a href="sanitize_split.html">sanitize_split()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Sanitize list of data frames</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="server_factory.html">server_factory()</a></code>
|
||||
|
||||
<code><a href="server_factory.html">server_factory()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Shiny server factory</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="shiny_cast.html">shiny_cast()</a></code>
|
||||
|
||||
<code><a href="shiny_cast.html">shiny_cast()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Launch the included Shiny-app for database casting and upload</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="split_non_repeating_forms.html">split_non_repeating_forms()</a></code>
|
||||
|
||||
<code><a href="split_non_repeating_forms.html">split_non_repeating_forms()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Split a data frame into separate tables for each form</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="strsplitx.html">strsplitx()</a></code>
|
||||
|
||||
<code><a href="strsplitx.html">strsplitx()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Extended string splitting</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="time_only_correction.html">time_only_correction()</a></code>
|
||||
|
||||
<code><a href="time_only_correction.html">time_only_correction()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>Correction based on time_only_filter function</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="ui_factory.html">ui_factory()</a></code>
|
||||
|
||||
<code><a href="ui_factory.html">ui_factory()</a></code>
|
||||
|
||||
</dt>
|
||||
<dd>UI factory for shiny app</dd>
|
||||
</dl></div>
|
||||
@ -291,14 +320,14 @@
|
||||
</div>
|
||||
|
||||
<div class="pkgdown-footer-right">
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
|
||||
</div>
|
||||
|
||||
</footer></div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body></html>
|
||||
|
||||
|
||||
@ -1,55 +1,40 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Multi missing check"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta property="og:description" content="Multi missing check"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]--></head><body>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta name="description" content="Multi missing check"><meta property="og:description" content="Multi missing check"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
||||
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||
|
||||
|
||||
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container">
|
||||
|
||||
|
||||
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||
|
||||
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
|
||||
|
||||
|
||||
|
||||
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||
<span class="navbar-toggler-icon"></span>
|
||||
</button>
|
||||
|
||||
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item">
|
||||
<a class="nav-link" href="../reference/index.html">Reference</a>
|
||||
</li>
|
||||
<ul class="navbar-nav me-auto"><li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||
<li class="nav-item dropdown">
|
||||
<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
|
||||
<div class="dropdown-menu" aria-labelledby="dropdown-articles">
|
||||
<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a>
|
||||
<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
|
||||
<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
|
||||
</div>
|
||||
</li>
|
||||
<li class="nav-item">
|
||||
<a class="nav-link" href="../news/index.html">Changelog</a>
|
||||
</li>
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
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<div class="d-none name"><code>is_missing.Rd</code></div>
|
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|
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|
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@ -64,22 +49,22 @@
|
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|
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>data</dt>
|
||||
|
||||
|
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<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
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<dd><p>character vector</p></dd>
|
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|
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|
||||
<dt>nas</dt>
|
||||
<dt id="arg-nas">nas<a class="anchor" aria-label="anchor" href="#arg-nas"></a></dt>
|
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<dd><p>character vector of strings considered as NA</p></dd>
|
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|
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</dl></div>
|
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<div class="section level2">
|
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
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<p>logical vector</p>
|
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<p>logical vector</p>
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<img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div>
|
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</div>
|
||||
|
||||
@ -67,20 +52,20 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>generics</dt>
|
||||
<dt id="arg-generics">generics<a class="anchor" aria-label="anchor" href="#arg-generics"></a></dt>
|
||||
<dd><p>default is "redcap_event_name", "redcap_repeat_instrument"
|
||||
and "redcap_repeat_instance"</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>logical</p>
|
||||
<p>logical</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -93,7 +78,7 @@ and "redcap_repeat_instance"</p></dd>
|
||||
<span class="r-out co"><span class="r-pr">#></span> [1] TRUE</span>
|
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@ -102,14 +87,14 @@ and "redcap_repeat_instance"</p></dd>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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|
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<img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
|
||||
<div class="d-none name"><code>mark_complete.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,22 +49,22 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>upload</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-upload">upload<a class="anchor" aria-label="anchor" href="#arg-upload"></a></dt>
|
||||
<dd><p>output list from `REDCapR::redcap_write()`</p></dd>
|
||||
|
||||
|
||||
<dt>ls</dt>
|
||||
<dt id="arg-ls">ls<a class="anchor" aria-label="anchor" href="#arg-ls"></a></dt>
|
||||
<dd><p>output list from `ds2dd_detailed()`</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list with `REDCapR::redcap_write()` results</p>
|
||||
<p>list with `REDCapR::redcap_write()` results</p>
|
||||
</div>
|
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -88,14 +73,14 @@
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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@ -1,55 +1,40 @@
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<!DOCTYPE html>
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<div class="d-none name"><code>match_fields_to_form.Rd</code></div>
|
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|
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|
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@ -64,22 +49,22 @@
|
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<dl><dt id="arg-metadata">metadata<a class="anchor" aria-label="anchor" href="#arg-metadata"></a></dt>
|
||||
<dd><p>A data frame containing field names and form names</p></dd>
|
||||
|
||||
|
||||
<dt>vars_in_data</dt>
|
||||
<dt id="arg-vars-in-data">vars_in_data<a class="anchor" aria-label="anchor" href="#arg-vars-in-data"></a></dt>
|
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<dd><p>A character vector of variable names</p></dd>
|
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|
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</dl></div>
|
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<div class="section level2">
|
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
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|
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|
||||
<p>A data frame containing field names and form names</p>
|
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<p>A data frame containing field names and form names</p>
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<img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
|
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<div class="d-none name"><code>mtcars_redcap.Rd</code></div>
|
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@ -107,7 +92,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
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<div class="d-none name"><code>process_user_input.character.Rd</code></div>
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@ -59,28 +44,28 @@
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<div class="section level2">
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for character</span></span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'character'</span></span>
|
||||
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
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<dd><p>input</p></dd>
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||||
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||||
<dt>...</dt>
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||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
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<dd><p>ignored</p></dd>
|
||||
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||||
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|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
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||||
<p>processed input</p>
|
||||
<p>processed input</p>
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for default</span></span>
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># Default S3 method</span></span>
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<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
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|
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<p>processed input</p>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
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@ -64,18 +49,18 @@
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<p>processed input</p>
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<p>processed input</p>
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
|
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<div class="d-none name"><code>process_user_input.response.Rd</code></div>
|
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|
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@ -59,28 +44,28 @@
|
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<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
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<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for response</span></span>
|
||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="co"># S3 method for class 'response'</span></span>
|
||||
<span><span class="fu"><a href="process_user_input.html">process_user_input</a></span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
|
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|
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|
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>x</dt>
|
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<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
|
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<dd><p>input</p></dd>
|
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<dt>...</dt>
|
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<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
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<dd><p>ignored</p></dd>
|
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|
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<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
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|
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|
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<p>processed input</p>
|
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<p>processed input</p>
|
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|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
|
||||
<div class="d-none name"><code>read_input.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -64,19 +49,19 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>file</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-file">file<a class="anchor" aria-label="anchor" href="#arg-file"></a></dt>
|
||||
<dd><p>file name</p></dd>
|
||||
|
||||
|
||||
<dt>consider.na</dt>
|
||||
<dt id="arg-consider-na">consider.na<a class="anchor" aria-label="anchor" href="#arg-consider-na"></a></dt>
|
||||
<dd><p>character vector of strings to consider as NAs</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>tibble</p>
|
||||
<p>tibble</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -105,7 +90,7 @@
|
||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 18 more rows</span></span>
|
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</code></pre></div>
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Convenience function to download complete instrument, using token storage
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in keyring."><title>Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument"><meta property="og:description" content="Convenience function to download complete instrument, using token storage
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in keyring."><meta property="og:description" content="Convenience function to download complete instrument, using token storage
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<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
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<div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
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</div>
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@ -74,39 +59,39 @@ in keyring.</p>
|
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||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>key</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-key">key<a class="anchor" aria-label="anchor" href="#arg-key"></a></dt>
|
||||
<dd><p>key name in standard keyring for token retrieval.</p></dd>
|
||||
|
||||
|
||||
<dt>uri</dt>
|
||||
<dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
|
||||
<dd><p>REDCap database API uri</p></dd>
|
||||
|
||||
|
||||
<dt>instrument</dt>
|
||||
<dt id="arg-instrument">instrument<a class="anchor" aria-label="anchor" href="#arg-instrument"></a></dt>
|
||||
<dd><p>instrument name</p></dd>
|
||||
|
||||
|
||||
<dt>raw_or_label</dt>
|
||||
<dt id="arg-raw-or-label">raw_or_label<a class="anchor" aria-label="anchor" href="#arg-raw-or-label"></a></dt>
|
||||
<dd><p>raw or label passed to `REDCapR::redcap_read()`</p></dd>
|
||||
|
||||
|
||||
<dt>id_name</dt>
|
||||
<dt id="arg-id-name">id_name<a class="anchor" aria-label="anchor" href="#arg-id-name"></a></dt>
|
||||
<dd><p>id variable name. Default is "record_id".</p></dd>
|
||||
|
||||
|
||||
<dt>records</dt>
|
||||
<dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
|
||||
<dd><p>specify the records to download. Index numbers.
|
||||
Numeric vector.</p></dd>
|
||||
|
||||
</dl></div>
|
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<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
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<p>data.frame</p>
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<p>data.frame</p>
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</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
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@ -115,14 +100,14 @@ Numeric vector.</p></dd>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Implementation of REDCap_split with a focused data acquisition approach using
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Download REDCap data — read_redcap_tables • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Download REDCap data — read_redcap_tables"><meta name="description" content="Implementation of REDCap_split with a focused data acquisition approach using
|
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REDCapR::redcap_read and only downloading specified fields, forms and/or
|
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events using the built-in focused_metadata including some clean-up.
|
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Works with classical and longitudinal projects with or without repeating
|
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instruments."><title>Download REDCap data — read_redcap_tables • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Download REDCap data — read_redcap_tables"><meta property="og:description" content="Implementation of REDCap_split with a focused data acquisition approach using
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instruments."><meta property="og:description" content="Implementation of REDCap_split with a focused data acquisition approach using
|
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REDCapR::redcap_read and only downloading specified fields, forms and/or
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events using the built-in focused_metadata including some clean-up.
|
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Works with classical and longitudinal projects with or without repeating
|
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instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
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||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]--></head><body>
|
||||
instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
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<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
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<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
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|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
|
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|
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<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
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|
||||
</li>
|
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<li class="nav-item">
|
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<a class="nav-link" href="../news/index.html">Changelog</a>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
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|
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</div>
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</nav><div class="container template-reference-topic">
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<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<div class="d-none name"><code>read_redcap_tables.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -85,44 +70,44 @@ instruments.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>uri</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-uri">uri<a class="anchor" aria-label="anchor" href="#arg-uri"></a></dt>
|
||||
<dd><p>REDCap database API uri</p></dd>
|
||||
|
||||
|
||||
<dt>token</dt>
|
||||
<dt id="arg-token">token<a class="anchor" aria-label="anchor" href="#arg-token"></a></dt>
|
||||
<dd><p>API token</p></dd>
|
||||
|
||||
|
||||
<dt>records</dt>
|
||||
<dt id="arg-records">records<a class="anchor" aria-label="anchor" href="#arg-records"></a></dt>
|
||||
<dd><p>records to download</p></dd>
|
||||
|
||||
|
||||
<dt>fields</dt>
|
||||
<dt id="arg-fields">fields<a class="anchor" aria-label="anchor" href="#arg-fields"></a></dt>
|
||||
<dd><p>fields to download</p></dd>
|
||||
|
||||
|
||||
<dt>events</dt>
|
||||
<dt id="arg-events">events<a class="anchor" aria-label="anchor" href="#arg-events"></a></dt>
|
||||
<dd><p>events to download</p></dd>
|
||||
|
||||
|
||||
<dt>forms</dt>
|
||||
<dt id="arg-forms">forms<a class="anchor" aria-label="anchor" href="#arg-forms"></a></dt>
|
||||
<dd><p>forms to download</p></dd>
|
||||
|
||||
|
||||
<dt>raw_or_label</dt>
|
||||
<dt id="arg-raw-or-label">raw_or_label<a class="anchor" aria-label="anchor" href="#arg-raw-or-label"></a></dt>
|
||||
<dd><p>raw or label tags</p></dd>
|
||||
|
||||
|
||||
<dt>split_forms</dt>
|
||||
<dt id="arg-split-forms">split_forms<a class="anchor" aria-label="anchor" href="#arg-split-forms"></a></dt>
|
||||
<dd><p>Whether to split "repeating" or "all" forms, default is
|
||||
all.</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>list of instruments</p>
|
||||
<p>list of instruments</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -131,7 +116,7 @@ all.</p></dd>
|
||||
<span class="r-in"></span>
|
||||
</code></pre></div>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
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</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
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</nav></aside></div>
|
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|
||||
|
||||
@ -140,14 +125,14 @@ all.</p></dd>
|
||||
</div>
|
||||
|
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<div class="pkgdown-footer-right">
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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</body></html>
|
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|
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|
||||
@ -1,57 +1,42 @@
|
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<!DOCTYPE html>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Converts a list of REDCap data frames from long to wide format.
|
||||
Handles longitudinal projects, but not yet repeated instruments."><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format.
|
||||
Handles longitudinal projects, but not yet repeated instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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<![endif]--></head><body>
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Redcap Wider — redcap_wider • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.4.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.4.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Redcap Wider — redcap_wider"><meta name="description" content="Converts a list of REDCap data frames from long to wide format.
|
||||
Handles longitudinal projects, but not yet repeated instruments."><meta property="og:description" content="Converts a list of REDCap data frames from long to wide format.
|
||||
Handles longitudinal projects, but not yet repeated instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
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<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
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||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.6.1</small>
|
||||
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.9.1</small>
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<a href="#" class="nav-link dropdown-toggle" data-bs-toggle="dropdown" role="button" aria-expanded="false" aria-haspopup="true" id="dropdown-articles">Articles</a>
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<div class="dropdown-menu" aria-labelledby="dropdown-articles">
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<a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a>
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<a class="dropdown-item" href="../articles/Introduction.html">Introduction</a>
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<a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a>
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<li class="nav-item">
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<a class="nav-link" href="../news/index.html">Changelog</a>
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</li>
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</ul><form class="form-inline my-2 my-lg-0" role="search">
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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</li>
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<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
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<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
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<li><a class="dropdown-item" href="../articles/Introduction.html">Introduction</a></li>
|
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<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
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</ul></li>
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<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
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</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
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<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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|
||||
</div>
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||||
</nav><div class="container template-reference-topic">
|
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<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="../logo.png" class="logo" alt=""><h1>Redcap Wider</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<div class="d-none name"><code>redcap_wider.Rd</code></div>
|
||||
</div>
|
||||
|
||||
@ -71,23 +56,23 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>data</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||
<dd><p>A list of data frames.</p></dd>
|
||||
|
||||
|
||||
<dt>event.glue</dt>
|
||||
<dt id="arg-event-glue">event.glue<a class="anchor" aria-label="anchor" href="#arg-event-glue"></a></dt>
|
||||
<dd><p>A dplyr::glue string for repeated events naming</p></dd>
|
||||
|
||||
|
||||
<dt>inst.glue</dt>
|
||||
<dt id="arg-inst-glue">inst.glue<a class="anchor" aria-label="anchor" href="#arg-inst-glue"></a></dt>
|
||||
<dd><p>A dplyr::glue string for repeated instruments naming</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>The list of data frames in wide format.</p>
|
||||
<p>The list of data frames in wide format.</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -169,7 +154,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
|
||||
<span class="r-out co"><span class="r-pr">#></span> 2 24 36 female</span>
|
||||
</code></pre></div>
|
||||
</div>
|
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|
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|
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|
||||
|
||||
@ -178,14 +163,14 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
|
||||
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|
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|
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<div class="pkgdown-footer-right">
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.9.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.0.</p>
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|
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|
||||
@ -1,57 +1,42 @@
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Contains only synthetic data."><title>Data set for demonstration — redcapcast_data • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Data set for demonstration — redcapcast_data"><meta property="og:description" content="This is a small dataset from a REDCap database for demonstrational purposes.
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<img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
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<div class="d-none name"><code>redcapcast_data.Rd</code></div>
|
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</div>
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|
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@ -143,7 +128,7 @@ Contains only synthetic data.</p>
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@ -152,14 +137,14 @@ Contains only synthetic data.</p>
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@ -1,55 +1,40 @@
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
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@ -121,7 +106,7 @@
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@ -1,57 +1,42 @@
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<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="Copied from textclean, which has not been updated since 2018 and is not
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<img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
|
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<div class="d-none name"><code>replace_curly_quote.Rd</code></div>
|
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</div>
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|
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@ -67,18 +52,18 @@ on CRAN. Github:https://github.com/trinker/textclean</p>
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<div class="section level2">
|
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>x</dt>
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||||
|
||||
|
||||
<dl><dt id="arg-x">x<a class="anchor" aria-label="anchor" href="#arg-x"></a></dt>
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<dd><p>character vector</p></dd>
|
||||
|
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</dl></div>
|
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<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>character vector</p>
|
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<p>character vector</p>
|
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</div>
|
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@ -87,14 +72,14 @@ on CRAN. Github:https://github.com/trinker/textclean</p>
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<img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
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<div class="d-none name"><code>sanitize_split.Rd</code></div>
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||||
@ -68,22 +53,22 @@
|
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<div class="section level2">
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<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
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<dl><dt>l</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-l">l<a class="anchor" aria-label="anchor" href="#arg-l"></a></dt>
|
||||
<dd><p>A list of data frames.</p></dd>
|
||||
|
||||
|
||||
<dt>generic.names</dt>
|
||||
<dt id="arg-generic-names">generic.names<a class="anchor" aria-label="anchor" href="#arg-generic-names"></a></dt>
|
||||
<dd><p>A vector of generic names to be excluded.</p></dd>
|
||||
|
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|
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|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>A list of data frames with generic names excluded.</p>
|
||||
<p>A list of data frames with generic names excluded.</p>
|
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<img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
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<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
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</div>
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@ -64,25 +49,25 @@
|
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<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||
<dl><dt>table</dt>
|
||||
|
||||
|
||||
<dl><dt id="arg-table">table<a class="anchor" aria-label="anchor" href="#arg-table"></a></dt>
|
||||
<dd><p>A data frame</p></dd>
|
||||
|
||||
|
||||
<dt>universal_fields</dt>
|
||||
<dt id="arg-universal-fields">universal_fields<a class="anchor" aria-label="anchor" href="#arg-universal-fields"></a></dt>
|
||||
<dd><p>A character vector of fields that should be included
|
||||
in every table</p></dd>
|
||||
|
||||
|
||||
<dt>fields</dt>
|
||||
<dt id="arg-fields">fields<a class="anchor" aria-label="anchor" href="#arg-fields"></a></dt>
|
||||
<dd><p>A two-column matrix containing the names of fields that should
|
||||
be included in each form</p></dd>
|
||||
|
||||
</dl></div>
|
||||
<div class="section level2">
|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>A list of data frames, one for each non-repeating form</p>
|
||||
<p>A list of data frames, one for each non-repeating form</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -122,7 +107,7 @@ be included in each form</p></dd>
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<span class="r-out co"><span class="r-pr">#></span> </span>
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</code></pre></div>
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@ -131,14 +116,14 @@ be included in each form</p></dd>
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easing the split around the defined delimiter, see example."><title>Extended string splitting — strsplitx • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.11/clipboard.min.js" integrity="sha512-7O5pXpc0oCRrxk8RUfDYFgn0nO1t+jLuIOQdOMRp4APB7uZ4vSjspzp5y6YDtDs4VzUSTbWzBFZ/LKJhnyFOKw==" crossorigin="anonymous" referrerpolicy="no-referrer"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extended string splitting — strsplitx"><meta property="og:description" content="Can be used as a substitute of the base function. Main claim to fame is
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<div class="d-none name"><code>strsplitx.Rd</code></div>
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@ -67,31 +52,31 @@ easing the split around the defined delimiter, see example.</p>
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|
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|
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|
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|
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<dd><p>perl param from strsplit()</p></dd>
|
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<div class="section level2">
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@ -113,7 +98,7 @@ easing the split around the defined delimiter, see example.</p>
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<img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
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<div class="d-none name"><code>time_only_correction.Rd</code></div>
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@ -64,19 +49,19 @@
|
||||
|
||||
<div class="section level2">
|
||||
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
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<dl><dt>data</dt>
|
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|
||||
|
||||
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
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<dd><p>data set</p></dd>
|
||||
|
||||
|
||||
<dt>...</dt>
|
||||
<dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
|
||||
<dd><p>arguments passed on to `guess_time_only_filter()`</p></dd>
|
||||
|
||||
</dl></div>
|
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|
||||
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||
|
||||
|
||||
<p>tibble</p>
|
||||
<p>tibble</p>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
@ -85,7 +70,7 @@
|
||||
<span class="r-in"><span><span class="co">## data |> time_only_correction()</span></span></span>
|
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</code></pre></div>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
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@ -64,12 +49,10 @@
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<p>shiny ui</p>
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||||
</url>
|
||||
<url>
|
||||
<loc>https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html</loc>
|
||||
</url>
|
||||
<url>
|
||||
<loc>https://agdamsbo.github.io/REDCapCAST/reference/ui_factory.html</loc>
|
||||
</url>
|
||||
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<url><loc>https://agdamsbo.github.io/REDCapCAST/404.html</loc></url>
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<url><loc>https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/LICENSE.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/articles/Shiny-app.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/articles/index.html</loc></url>
|
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<url><loc>https://agdamsbo.github.io/REDCapCAST/authors.html</loc></url>
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<url><loc>https://agdamsbo.github.io/REDCapCAST/index.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/news/index.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/d2w.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/index.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/read_input.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/server_factory.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html</loc></url>
|
||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ui_factory.html</loc></url>
|
||||
</urlset>
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user