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45 changed files with 285 additions and 453 deletions

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@ -27,7 +27,7 @@
<a href="https://agdamsbo.github.io/REDCapCAST/#main" class="visually-hidden-focusable">Skip to contents</a> <a href="https://agdamsbo.github.io/REDCapCAST/#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a>
@ -91,7 +91,7 @@ Content not found. Please use links in the navbar.
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p> <p></p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div> </div>
</footer> </footer>

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@ -6,7 +6,7 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
@ -129,7 +129,7 @@
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div> </div>
</footer></div> </footer></div>

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@ -6,7 +6,7 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
@ -258,7 +258,7 @@
</div> </div>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div> </div>
</footer></div> </footer></div>

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@ -29,7 +29,7 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
@ -175,7 +175,7 @@ upload: manual or through <code>REDCapR</code>.</p>
<div class="pkgdown-footer-right"> <div class="pkgdown-footer-right">
<p></p> <p></p>
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
</div> </div>
</footer> </footer>

View File

@ -29,7 +29,7 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
@ -100,23 +100,23 @@ demonstration of the functions.</p>
</h2> </h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -142,12 +142,12 @@ demonstration of the functions.</p>
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@ -159,7 +159,7 @@ demonstration of the functions.</p>
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@ -171,7 +171,7 @@ demonstration of the functions.</p>
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@ -183,13 +183,13 @@ demonstration of the functions.</p>
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@ -204,7 +204,7 @@ demonstration of the functions.</p>
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@ -224,7 +224,7 @@ demonstration of the functions.</p>
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@ -236,15 +236,15 @@ demonstration of the functions.</p>
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@ -256,11 +256,11 @@ demonstration of the functions.</p>
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@ -286,7 +286,7 @@ demonstration of the functions.</p>
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@ -301,15 +301,15 @@ demonstration of the functions.</p>
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@ -328,7 +328,7 @@ demonstration of the functions.</p>
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@ -341,7 +341,7 @@ demonstration of the functions.</p>
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@ -355,15 +355,15 @@ demonstration of the functions.</p>
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@ -373,16 +373,16 @@ demonstration of the functions.</p>
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@ -392,7 +392,7 @@ demonstration of the functions.</p>
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@ -402,7 +402,7 @@ demonstration of the functions.</p>
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@ -412,7 +412,7 @@ demonstration of the functions.</p>
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@ -422,11 +422,11 @@ demonstration of the functions.</p>
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@ -435,7 +435,7 @@ demonstration of the functions.</p>
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@ -449,7 +449,7 @@ demonstration of the functions.</p>
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@ -458,7 +458,7 @@ demonstration of the functions.</p>
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@ -472,7 +472,7 @@ demonstration of the functions.</p>
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@ -480,63 +480,63 @@ demonstration of the functions.</p>
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@ -1067,23 +1067,23 @@ demonstration of the functions.</p>
</div> </div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -1109,12 +1109,12 @@ demonstration of the functions.</p>
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@ -1126,7 +1126,7 @@ demonstration of the functions.</p>
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@ -1138,7 +1138,7 @@ demonstration of the functions.</p>
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@ -1150,13 +1150,13 @@ demonstration of the functions.</p>
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@ -2001,7 +2001,7 @@ approach.</p>
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@ -29,7 +29,7 @@
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@ -113,7 +113,7 @@ functionality, but might be extended in the future.</p>
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<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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@ -6,7 +6,7 @@
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<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
@ -70,7 +70,7 @@
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<p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.8.</p> <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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<a class="navbar-brand me-2" href="index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
@ -89,7 +89,7 @@ R package version 24.4.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https
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<meta name="description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;)."> <meta name="description" content="Originally forked from the R part of REDCapRITS by Paul Egeler.
See &lt;https://github.com/pegeler/REDCapRITS&gt;.
REDCap database casting and handling of castellated data when using
repeated instruments and longitudinal projects. Keeps a focused data export
approach, by allowing to only export required data from the database.
REDCap (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;;
Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
<title>REDCap Castellated Data Handling • REDCapCAST</title> <title>REDCap Castellated Data Handling • REDCapCAST</title>
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<meta property="og:description" content="Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap database casting and handling of castellated data when using repeated instruments and longitudinal projects. Keeps a focused data export approach, by allowing to only export required data from the database. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;)."> <meta property="og:description" content="Originally forked from the R part of REDCapRITS by Paul Egeler.
See &lt;https://github.com/pegeler/REDCapRITS&gt;.
REDCap database casting and handling of castellated data when using
repeated instruments and longitudinal projects. Keeps a focused data export
approach, by allowing to only export required data from the database.
REDCap (Research Electronic Data Capture) is a secure, web-based software
platform designed to support data capture for research studies, providing
1) an intuitive interface for validated data capture; 2) audit trails for
tracking data manipulation and export procedures; 3) automated export
procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external
sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;;
Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
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<h2 class="pkg-version" data-toc-text="24.4.1" id="redcapcast-2441---in-development">REDCapCAST 24.4.1 - in development<a class="anchor" aria-label="anchor" href="#redcapcast-2441---in-development"></a></h2> <h2 class="pkg-version" data-toc-text="24.4.1" id="redcapcast-2441---in-development">REDCapCAST 24.4.1 - in development<a class="anchor" aria-label="anchor" href="#redcapcast-2441---in-development"></a></h2>
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<h4 id="functions-24-4-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-4-1"></a></h4> <h4 id="functions-24-4-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-4-1"></a></h4>
<ul><li><p>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: field names testing allows to include “[form_name]_complete” fields.</p></li> <ul><li>Fix: <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>: field names testing allows to include “[form_name]_complete” fields.</li>
<li><p>Fix: <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: default record ID name is now “record_id”, the REDCap default. Default is still to use the first column name. Support was added to interpret column name prefix or suffix as instrument names. See the examples.</p></li>
<li><p>New: <code><a href="../reference/create_instrument_meta.html">create_instrument_meta()</a></code>: creates zip with instrument files to allow adding new instruments to project in production. Takes data dictionary as input and creates a zip for each instrument specified by the <code>form_name</code> column.</p></li>
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<h4 id="documentation-and-more-24-4-1">Documentation and more<a class="anchor" aria-label="anchor" href="#documentation-and-more-24-4-1"></a></h4> <h4 id="documentation-and-more-24-4-1">Documentation and more<a class="anchor" aria-label="anchor" href="#documentation-and-more-24-4-1"></a></h4>
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<img src="../logo.png" class="logo" alt=""><h1>Create zips file with necessary content based on data set</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/create_instrument_meta.R" class="external-link"><code>R/create_instrument_meta.R</code></a></small>
<div class="d-none name"><code>create_instrument_meta.Rd</code></div>
</div>
<div class="ref-description section level2">
<p>Metadata can be added by editing the data dictionary of a project in the
initial design phase. If you want to later add new instruments, this can be
used to add instrument(s) to a project in production.</p>
</div>
<div class="section level2">
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">create_instrument_meta</span><span class="op">(</span><span class="va">data</span>, dir <span class="op">=</span> <span class="fu">here</span><span class="fu">::</span><span class="fu"><a href="https://here.r-lib.org//reference/here.html" class="external-link">here</a></span><span class="op">(</span><span class="st">""</span><span class="op">)</span>, record.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
</div>
<div class="section level2">
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
<dl><dt>data</dt>
<dd><p>metadata for the relevant instrument.
Could be from `ds2dd_detailed()`</p></dd>
<dt>dir</dt>
<dd><p>destination dir for the instrument zip. Default is the current WD.</p></dd>
<dt>record.id</dt>
<dd><p>flag to omit the first row of the data dictionary assuming
this is the record_id field which should not be included in the instrument.
Default is TRUE.</p></dd>
</dl></div>
<div class="section level2">
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
<p>list</p>
</div>
<div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
<span class="r-in"><span> form.name<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"b"</span>,<span class="st">"c"</span><span class="op">)</span>,size <span class="op">=</span> <span class="fl">6</span>,replace <span class="op">=</span> <span class="cn">TRUE</span>,prob<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fl">.5</span>,<span class="fl">2</span><span class="op">)</span><span class="op">)</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span>
<span class="r-in"><span><span class="co"># data |&gt; create_instrument_meta()</span></span></span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">data</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(names(data)),</span></span></span>
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(data)}"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">data</span> <span class="op">|&gt;</span> <span class="fu"><a href="ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>form.sep<span class="op">=</span><span class="st">"__"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="co"># data |&gt;</span></span></span>
<span class="r-in"><span><span class="co"># purrr::pluck("meta") |&gt;</span></span></span>
<span class="r-in"><span><span class="co"># create_instrument_meta(record.id = FALSE)</span></span></span>
</code></pre></div>
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@ -6,7 +6,7 @@
<a href="#main" class="visually-hidden-focusable">Skip to contents</a> <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
<nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light" data-bs-theme="light"><div class="container"> <nav class="navbar fixed-top navbar-light navbar-expand-lg bg-light"><div class="container">
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a> <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
@ -64,13 +64,11 @@
<span> add.auto.id <span class="op">=</span> <span class="cn">FALSE</span>,</span> <span> add.auto.id <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> date.format <span class="op">=</span> <span class="st">"dmy"</span>,</span> <span> date.format <span class="op">=</span> <span class="st">"dmy"</span>,</span>
<span> form.name <span class="op">=</span> <span class="cn">NULL</span>,</span> <span> form.name <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> form.sep <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> form.prefix <span class="op">=</span> <span class="cn">TRUE</span>,</span>
<span> field.type <span class="op">=</span> <span class="cn">NULL</span>,</span> <span> field.type <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span> <span> field.label <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span> <span> field.label.attr <span class="op">=</span> <span class="st">"label"</span>,</span>
<span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span> <span> field.validation <span class="op">=</span> <span class="cn">NULL</span>,</span>
<span> metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span>,</span> <span> metadata <span class="op">=</span> <span class="va">metadata_names</span>,</span>
<span> validate.time <span class="op">=</span> <span class="cn">FALSE</span>,</span> <span> validate.time <span class="op">=</span> <span class="cn">FALSE</span>,</span>
<span> time.var.sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span> <span> time.var.sel.pos <span class="op">=</span> <span class="st">"[Tt]i[d(me)]"</span>,</span>
<span> time.var.sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span> <span> time.var.sel.neg <span class="op">=</span> <span class="st">"[Dd]at[eo]"</span></span>
@ -97,17 +95,6 @@ dmy.</p></dd>
ncol(data). Default is NULL and "data" is used.</p></dd> ncol(data). Default is NULL and "data" is used.</p></dd>
<dt>form.sep</dt>
<dd><p>If supplied dataset has form names as suffix or prefix to the
column/variable names, the seperator can be specified. If supplied, the
form.sep is ignored. Default is NULL.</p></dd>
<dt>form.prefix</dt>
<dd><p>Flag to set if form is prefix (TRUE) or suffix (FALSE) to
the column names. Assumes all columns have pre- or suffix if specified.</p></dd>
<dt>field.type</dt> <dt>field.type</dt>
<dd><p>manually specify field type(s). Vector of length 1 or <dd><p>manually specify field type(s). Vector of length 1 or
ncol(data). Default is NULL and "text" is used for everything but factors, ncol(data). Default is NULL and "text" is used for everything but factors,
@ -169,7 +156,7 @@ Please, do always inspect the data dictionary before upload.</p>
<div class="section level2"> <div class="section level2">
<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="redcapcast_data.html">redcapcast_data</a></span></span></span> <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">redcapcast_data</span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>validate.time <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span> <span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>validate.time <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $is.POSIX</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $is.POSIX</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 2</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 19 × 2</span></span>
@ -277,17 +264,17 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 24 × 18</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 24 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span> <span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> record_id data <span style="color: #BB0000;">NA</span> text record_id </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> redcap_event_name <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_event_na…</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> redcap_event_name data <span style="color: #BB0000;">NA</span> text redcap_event_na…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> redcap_repeat_instrument <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> redcap_repeat_instrument data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> redcap_repeat_instance <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> redcap_repeat_instance data <span style="color: #BB0000;">NA</span> text redcap_repeat_i…</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> cpr <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text cpr </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> cpr data <span style="color: #BB0000;">NA</span> text cpr </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> inclusion <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text inclusion </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> inclusion data <span style="color: #BB0000;">NA</span> text inclusion </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> inclusion_time <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text inclusion_time </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> inclusion_time data <span style="color: #BB0000;">NA</span> text inclusion_time </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> dob <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text dob </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> dob data <span style="color: #BB0000;">NA</span> text dob </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> age <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text age </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> age data <span style="color: #BB0000;">NA</span> text age </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> age_integer <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text age_integer </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> age_integer data <span style="color: #BB0000;">NA</span> text age_integer </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 14 more rows</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 14 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
@ -300,30 +287,30 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span> <span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $data</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 6</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id sepal.length sepal.width petal.length petal.width species</span> <span class="r-out co"><span class="r-pr">#&gt;</span> default_trial_id sepal.length sepal.width petal.length petal.width species</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 5.1 3.5 1.4 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 5.1 3.5 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2 4.9 3 1.4 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2 4.9 3 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 3 4.7 3.2 1.3 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 3 4.7 3.2 1.3 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4 4.6 3.1 1.5 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4 4.6 3.1 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 5 3.6 1.4 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 5 3.6 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 6 5.4 3.9 1.7 0.4 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 6 5.4 3.9 1.7 0.4 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 7 4.6 3.4 1.4 0.3 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 7 4.6 3.4 1.4 0.3 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 8 5 3.4 1.5 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 8 5 3.4 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 9 4.4 2.9 1.4 0.2 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 9 4.4 2.9 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 10 4.9 3.1 1.5 0.1 setosa </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 10 4.9 3.1 1.5 0.1 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 140 more rows</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 140 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span> <span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> default_trial_id data <span style="color: #BB0000;">NA</span> text default_trial_id</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text sepal.length</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length data <span style="color: #BB0000;">NA</span> text Sepal.Length </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text sepal.width </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width data <span style="color: #BB0000;">NA</span> text Sepal.Width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text petal.length</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length data <span style="color: #BB0000;">NA</span> text Petal.Length </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text petal.width </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width data <span style="color: #BB0000;">NA</span> text Petal.Width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> radio species </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species data <span style="color: #BB0000;">NA</span> radio Species </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
@ -335,36 +322,37 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span> <span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $data</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 32 × 12</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 32 × 12</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id mpg cyl disp hp drat wt qsec vs am gear carb</span> <span class="r-out co"><span class="r-pr">#&gt;</span> default_trial_id mpg cyl disp hp drat wt qsec vs am gear</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 21 6 160 110 3.9 2.62 16.5 0 1 4 4</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 21 6 160 110 3.9 2.62 16.5 0 1 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2 21 6 160 110 3.9 2.88 17.0 0 1 4 4</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2 21 6 160 110 3.9 2.88 17.0 0 1 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 3 22.8 4 108 93 3.85 2.32 18.6 1 1 4 1</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 3 22.8 4 108 93 3.85 2.32 18.6 1 1 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4 21.4 6 258 110 3.08 3.22 19.4 1 0 3 1</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4 21.4 6 258 110 3.08 3.22 19.4 1 0 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 18.7 8 360 175 3.15 3.44 17.0 0 0 3 2</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 18.7 8 360 175 3.15 3.44 17.0 0 0 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 6 18.1 6 225 105 2.76 3.46 20.2 1 0 3 1</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 6 18.1 6 225 105 2.76 3.46 20.2 1 0 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 7 14.3 8 360 245 3.21 3.57 15.8 0 0 3 4</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 7 14.3 8 360 245 3.21 3.57 15.8 0 0 3</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 8 24.4 4 147. 62 3.69 3.19 20 1 0 4 2</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 8 24.4 4 147. 62 3.69 3.19 20 1 0 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 9 22.8 4 141. 95 3.92 3.15 22.9 1 0 4 2</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 9 22.8 4 141. 95 3.92 3.15 22.9 1 0 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 10 19.2 6 168. 123 3.92 3.44 18.3 1 0 4 4</span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 10 19.2 6 168. 123 3.92 3.44 18.3 1 0 4</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 22 more rows</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 22 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 1 more variable: carb &lt;dbl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span> <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 12 × 18</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 12 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label</span> <span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> record_id <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text record_id </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> default_trial_id data <span style="color: #BB0000;">NA</span> text default_trial_id</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> mpg <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text mpg </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> mpg data <span style="color: #BB0000;">NA</span> text mpg </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> cyl <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text cyl </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> cyl data <span style="color: #BB0000;">NA</span> text cyl </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> disp <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text disp </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> disp data <span style="color: #BB0000;">NA</span> text disp </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> hp <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text hp </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> hp data <span style="color: #BB0000;">NA</span> text hp </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> drat <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text drat </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> drat data <span style="color: #BB0000;">NA</span> text drat </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> wt <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text wt </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> wt data <span style="color: #BB0000;">NA</span> text wt </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> qsec <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text qsec </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> qsec data <span style="color: #BB0000;">NA</span> text qsec </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> vs <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text vs </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> vs data <span style="color: #BB0000;">NA</span> text vs </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> am <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text am </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> am data <span style="color: #BB0000;">NA</span> text am </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> gear <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text gear </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> gear data <span style="color: #BB0000;">NA</span> text gear </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> carb <span style="color: #BB0000;">NA</span> <span style="color: #BB0000;">NA</span> text carb </span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> carb data <span style="color: #BB0000;">NA</span> text carb </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
@ -372,46 +360,6 @@ Please, do always inspect the data dictionary before upload.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># question_number &lt;lgl&gt;, matrix_group_name &lt;lgl&gt;, matrix_ranking &lt;lgl&gt;,</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># question_number &lt;lgl&gt;, matrix_group_name &lt;lgl&gt;, matrix_ranking &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># field_annotation &lt;lgl&gt;</span></span> <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># field_annotation &lt;lgl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span> <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-in"><span><span class="va">data</span> <span class="op">&lt;-</span> <span class="va">iris</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
<span class="r-in"><span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> A default id column has been added</span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="va">data</span><span class="op">)</span> <span class="op">&lt;-</span> <span class="fu">glue</span><span class="fu">::</span><span class="fu"><a href="https://glue.tidyverse.org/reference/glue.html" class="external-link">glue</a></span><span class="op">(</span><span class="st">"{sample(x = c('a','b'),size = length(names(data)),</span></span></span>
<span class="r-in"><span><span class="st">replace=TRUE,prob = rep(x=.5,2))}__{names(data)}"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>form.sep<span class="op">=</span><span class="st">"__"</span><span class="op">)</span></span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> record_id sepal.length sepal.width petal.length petal.width species</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> 1 5.1 3.5 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> 2 4.9 3 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> 3 4.7 3.2 1.3 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> 4 4.6 3.1 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> 5 5 3.6 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> 6 5.4 3.9 1.7 0.4 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> 7 4.6 3.4 1.4 0.3 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> 8 5 3.4 1.5 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> 9 4.4 2.9 1.4 0.2 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> 10 4.9 3.1 1.5 0.1 setosa </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 140 more rows</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> field_name form_name section_header field_type field_label </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id b <span style="color: #BB0000;">NA</span> text record_id </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length b <span style="color: #BB0000;">NA</span> text sepal.length</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width b <span style="color: #BB0000;">NA</span> text sepal.width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length a <span style="color: #BB0000;">NA</span> text petal.length</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width a <span style="color: #BB0000;">NA</span> text petal.width </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species a <span style="color: #BB0000;">NA</span> radio species </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># branching_logic &lt;lgl&gt;, required_field &lt;lgl&gt;, custom_alignment &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># question_number &lt;lgl&gt;, matrix_group_name &lt;lgl&gt;, matrix_ranking &lt;lgl&gt;,</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># field_annotation &lt;lgl&gt;</span></span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
</code></pre></div> </code></pre></div>
</div> </div>
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@ -423,7 +371,7 @@ Please, do always inspect the data dictionary before upload.</p>
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@ -74,11 +74,6 @@
<dd>clean_redcap_name</dd> <dd>clean_redcap_name</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="create_instrument_meta.html">create_instrument_meta()</a></code>
</dt>
<dd>Create zips file with necessary content based on data set</dd>
</dl><dl><dt>
<code><a href="d2w.html">d2w()</a></code> <code><a href="d2w.html">d2w()</a></code>
</dt> </dt>
<dd>Convert single digits to words</dd> <dd>Convert single digits to words</dd>
@ -156,7 +151,8 @@
<code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code> <code><a href="read_redcap_instrument.html">read_redcap_instrument()</a></code>
</dt> </dt>
<dd>Convenience function to download complete instrument, using token storage in keyring.</dd> <dd>Convenience function to download complete instrument, using token storage
in keyring.</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="read_redcap_tables.html">read_redcap_tables()</a></code> <code><a href="read_redcap_tables.html">read_redcap_tables()</a></code>
@ -221,7 +217,7 @@
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<img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1> <img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage
in keyring.</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
<div class="d-none name"><code>read_redcap_instrument.Rd</code></div> <div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
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@ -115,7 +118,7 @@ Numeric vector.</p></dd>
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@ -14,7 +14,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
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@ -8,7 +8,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
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@ -178,7 +178,7 @@ Handles longitudinal projects, but not yet repeated instruments.</p>
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<url> <url>
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