andreas/REDCapCAST
1
0
Fork 0
mirror of https://github.com/agdamsbo/REDCapCAST.git synced 2024-11-24 14:01:55 +01:00
Code Issues Packages Projects Releases Wiki Activity

Compare commits

base: andreas:1f659c5bd9d810e27f3618b66bc16d85bf35c6c2
Branches Tags
andreas:gh-pages
andreas:main
andreas:agdamsbo-patch-1
andreas:docs
andreas:v24.10.3
andreas:v24.6.1
andreas:v24.2.1
andreas:v24.1.1
andreas:v23.12.1
andreas:v23.6.2
andreas:v23.6.1
..
compare: andreas:ae1c120cd8add44c3c55609b0fec8a3c848a8bf5
Branches Tags
andreas:gh-pages
andreas:main
andreas:agdamsbo-patch-1
andreas:docs
andreas:v24.10.3
andreas:v24.6.1
andreas:v24.2.1
andreas:v24.1.1
andreas:v23.12.1
andreas:v23.6.2
andreas:v23.6.1

No commits in common. "1f659c5bd9d810e27f3618b66bc16d85bf35c6c2" and "ae1c120cd8add44c3c55609b0fec8a3c848a8bf5" have entirely different histories.
1f659c5bd9 ... ae1c120cd8

5 changed files with 9 additions and 333 deletions
Show Stats Expand all files Collapse all files

2
DESCRIPTION
View File

@ -1,5 +1,5 @@
Package: REDCapCAST
Title: REDCap Metadata Casting and Castellated Data Handling
Title: REDCap Castellated Data Handling and Metadata Casting
Version: 24.11.2
Authors@R: c(
person("Andreas Gammelgaard", "Damsbo", email = "agdamsbo@clin.au.dk",

6
NEWS.md
View File

@ -1,12 +1,12 @@
# REDCapCAST 24.11.2
24.11.1 was rejected on CRAN based on wrong title capitalisation. This was an opportunity to extend the package overhaul. And this actually turned out to be a major step towards a very usable shiny app which have received most of the focus.
24.11.1 was rejected on CRAN based on wrong title capitalisation. This was an opportunity to extend the package overhaul.
I have implemented option to specify categorical variables to factorize, but doing this with a modified version of {forcats} and {haven}'s `as_factor()`, that will preserve any attributes applied to the data to be able to upload and cast REDCap meta data from richly formatted data (use .rds). No matter the input type, all input is parsed using the default options from the {readr} package. Also to avoid mis-labelling, logicals are converted to factors as REDCap truefalse class follows different naming conversion compared to R. Also correct support for variable labels as field labels (use .rds formatted data and label with labelled::var_label())
Documentation has been updated. Data parser functions have been added (based on readr) and separated from the ds2dd_detailed(). Now also includes conversion of logicals to factor as REDCap truefalse class follows different naming conversion compared to R. Also correct support for variable labels as field labels (use .rds formatted data and label with labelled::var_label())
Vignettes and documentation have been restructured.
This package has been detached from the REDCapRITS, which it was originally forked from. The data split function will be kept, while testing will be rewritten. This projects has evolved away from the original fork.
This package has been detached from the REDCapRITS, which it was originally forked from. The data split function will be kept, while testing will be rewritten. This projects has evolved away from the original fork, so I think this detachment is fair.
# REDCapCAST 24.11.1

2
inst/WORDLIST
View File

@ -56,12 +56,10 @@ io
jbi
keyring
labelled
labelling
mRS
matadata
md
mdy
mis
mrs
mtcars
na

2
inst/shiny-examples/casting/rsconnect/shinyapps.io/agdamsbo/redcapcast.dcf
View File

@ -5,6 +5,6 @@ account: agdamsbo
server: shinyapps.io
hostUrl: https://api.shinyapps.io/v1
appId: 11351429
bundleId: 9402312
bundleId: 9396834
url: https://agdamsbo.shinyapps.io/redcapcast/
version: 1

330
renv.lock
View File

@ -19,16 +19,6 @@
],
"Hash": "470851b6d5d0ac559e9d01bb352b4021"
},
"RColorBrewer": {
"Package": "RColorBrewer",
"Version": "1.1-3",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R"
],
"Hash": "45f0398006e83a5b10b72a90663d8d8c"
},
"REDCapR": {
"Package": "REDCapR",
"Version": "1.3.0",
@ -60,19 +50,6 @@
],
"Hash": "6b868847b365672d6c1677b1608da9ed"
},
"V8": {
"Package": "V8",
"Version": "6.0.0",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"Rcpp",
"curl",
"jsonlite",
"utils"
],
"Hash": "6603bfcbc7883a5fed41fb13042a3899"
},
"askpass": {
"Package": "askpass",
"Version": "1.2.1",
@ -113,16 +90,6 @@
],
"Hash": "543776ae6848fde2f48ff3816d0628bc"
},
"bigD": {
"Package": "bigD",
"Version": "0.3.0",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R"
],
"Hash": "78dfe2b21e523358871eea1601b04b56"
},
"bit": {
"Package": "bit",
"Version": "4.5.0",
@ -147,13 +114,6 @@
],
"Hash": "e84984bf5f12a18628d9a02322128dfd"
},
"bitops": {
"Package": "bitops",
"Version": "1.0-9",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "d972ef991d58c19e6efa71b21f5e144b"
},
"bslib": {
"Package": "bslib",
"Version": "0.8.0",
@ -232,20 +192,6 @@
],
"Hash": "3f038e5ac7f41d4ac41ce658c85e3042"
},
"colorspace": {
"Package": "colorspace",
"Version": "2.1-1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"grDevices",
"graphics",
"methods",
"stats"
],
"Hash": "d954cb1c57e8d8b756165d7ba18aa55a"
},
"commonmark": {
"Package": "commonmark",
"Version": "1.9.2",
@ -319,16 +265,6 @@
],
"Hash": "fedd9d00c2944ff00a0e2696ccf048ec"
},
"evaluate": {
"Package": "evaluate",
"Version": "1.0.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R"
],
"Hash": "3fd29944b231036ad67c3edb32e02201"
},
"fansi": {
"Package": "fansi",
"Version": "1.0.6",
@ -341,13 +277,6 @@
],
"Hash": "962174cf2aeb5b9eea581522286a911f"
},
"farver": {
"Package": "farver",
"Version": "2.1.2",
"Source": "Repository",
"Repository": "CRAN",
"Hash": "680887028577f3fa2a81e410ed0d6e42"
},
"fastmap": {
"Package": "fastmap",
"Version": "1.2.0",
@ -367,7 +296,7 @@
},
"fontawesome": {
"Package": "fontawesome",
"Version": "0.5.3",
"Version": "0.5.2",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
@ -375,7 +304,7 @@
"htmltools",
"rlang"
],
"Hash": "bd1297f9b5b1fc1372d19e2c4cd82215"
"Hash": "c2efdd5f0bcd1ea861c2d4e2a883a67d"
},
"forcats": {
"Package": "forcats",
@ -426,36 +355,6 @@
],
"Hash": "5899f1eaa825580172bb56c08266f37c"
},
"gt": {
"Package": "gt",
"Version": "0.11.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"base64enc",
"bigD",
"bitops",
"cli",
"commonmark",
"dplyr",
"fs",
"glue",
"htmltools",
"htmlwidgets",
"juicyjuice",
"magrittr",
"markdown",
"reactable",
"rlang",
"sass",
"scales",
"tidyselect",
"vctrs",
"xml2"
],
"Hash": "3170d1f0f45e531c241179ab57cd30bd"
},
"haven": {
"Package": "haven",
"Version": "2.5.4",
@ -477,27 +376,6 @@
],
"Hash": "9171f898db9d9c4c1b2c745adc2c1ef1"
},
"here": {
"Package": "here",
"Version": "1.0.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"rprojroot"
],
"Hash": "24b224366f9c2e7534d2344d10d59211"
},
"highr": {
"Package": "highr",
"Version": "0.11",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"xfun"
],
"Hash": "d65ba49117ca223614f71b60d85b8ab7"
},
"hms": {
"Package": "hms",
"Version": "1.1.3",
@ -528,21 +406,6 @@
],
"Hash": "81d371a9cc60640e74e4ab6ac46dcedc"
},
"htmlwidgets": {
"Package": "htmlwidgets",
"Version": "1.6.4",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"grDevices",
"htmltools",
"jsonlite",
"knitr",
"rmarkdown",
"yaml"
],
"Hash": "04291cc45198225444a397606810ac37"
},
"httpuv": {
"Package": "httpuv",
"Version": "1.6.15",
@ -593,16 +456,6 @@
],
"Hash": "4e993b65c2c3ffbffce7bb3e2c6f832b"
},
"juicyjuice": {
"Package": "juicyjuice",
"Version": "0.1.0",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"V8"
],
"Hash": "3bcd11943da509341838da9399e18bce"
},
"keyring": {
"Package": "keyring",
"Version": "1.3.2",
@ -623,33 +476,6 @@
],
"Hash": "5cd8cfb2e90c57110b7dd1785c599aba"
},
"knitr": {
"Package": "knitr",
"Version": "1.49",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"evaluate",
"highr",
"methods",
"tools",
"xfun",
"yaml"
],
"Hash": "9fcb189926d93c636dea94fbe4f44480"
},
"labeling": {
"Package": "labeling",
"Version": "0.4.3",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"graphics",
"stats"
],
"Hash": "b64ec208ac5bc1852b285f665d6368b3"
},
"later": {
"Package": "later",
"Version": "1.3.2",
@ -684,19 +510,6 @@
],
"Hash": "7ce2733a9826b3aeb1775d56fd305472"
},
"markdown": {
"Package": "markdown",
"Version": "1.13",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"commonmark",
"utils",
"xfun"
],
"Hash": "074efab766a9d6360865ad39512f2a7e"
},
"memoise": {
"Package": "memoise",
"Version": "2.0.1",
@ -730,17 +543,6 @@
],
"Hash": "ab9d0930bfa21e98aec9d07f0c43cc89"
},
"munsell": {
"Package": "munsell",
"Version": "0.5.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"colorspace",
"methods"
],
"Hash": "4fd8900853b746af55b81fda99da7695"
},
"openssl": {
"Package": "openssl",
"Version": "2.2.2",
@ -753,7 +555,7 @@
},
"openxlsx2": {
"Package": "openxlsx2",
"Version": "1.11",
"Version": "1.10",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
@ -766,7 +568,7 @@
"utils",
"zip"
],
"Hash": "c519244e5080a630292e1fdc36717f0d"
"Hash": "ee4b99fc9ca05bbfd29d567785c093d2"
},
"pillar": {
"Package": "pillar",
@ -860,31 +662,6 @@
],
"Hash": "5e3c5dc0b071b21fa128676560dbe94d"
},
"reactR": {
"Package": "reactR",
"Version": "0.6.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"htmltools"
],
"Hash": "b8e3d93f508045812f47136c7c44c251"
},
"reactable": {
"Package": "reactable",
"Version": "0.4.4",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"digest",
"htmltools",
"htmlwidgets",
"jsonlite",
"reactR"
],
"Hash": "6069eb2a6597963eae0605c1875ff14c"
},
"readODS": {
"Package": "readODS",
"Version": "2.3.1",
@ -954,39 +731,6 @@
],
"Hash": "3eec01f8b1dee337674b2e34ab1f9bc1"
},
"rmarkdown": {
"Package": "rmarkdown",
"Version": "2.29",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"bslib",
"evaluate",
"fontawesome",
"htmltools",
"jquerylib",
"jsonlite",
"knitr",
"methods",
"tinytex",
"tools",
"utils",
"xfun",
"yaml"
],
"Hash": "df99277f63d01c34e95e3d2f06a79736"
},
"rprojroot": {
"Package": "rprojroot",
"Version": "2.0.4",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R"
],
"Hash": "4c8415e0ec1e29f3f4f6fc108bef0144"
},
"sass": {
"Package": "sass",
"Version": "0.4.9",
@ -1001,26 +745,6 @@
],
"Hash": "d53dbfddf695303ea4ad66f86e99b95d"
},
"scales": {
"Package": "scales",
"Version": "1.3.0",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"R6",
"RColorBrewer",
"cli",
"farver",
"glue",
"labeling",
"lifecycle",
"munsell",
"rlang",
"viridisLite"
],
"Hash": "c19df082ba346b0ffa6f833e92de34d1"
},
"shiny": {
"Package": "shiny",
"Version": "1.9.1",
@ -1166,16 +890,6 @@
],
"Hash": "829f27b9c4919c16b593794a6344d6c0"
},
"tinytex": {
"Package": "tinytex",
"Version": "0.54",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"xfun"
],
"Hash": "3ec7e3ddcacc2d34a9046941222bf94d"
},
"tzdb": {
"Package": "tzdb",
"Version": "0.4.0",
@ -1211,16 +925,6 @@
],
"Hash": "c03fa420630029418f7e6da3667aac4a"
},
"viridisLite": {
"Package": "viridisLite",
"Version": "0.4.2",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R"
],
"Hash": "c826c7c4241b6fc89ff55aaea3fa7491"
},
"vroom": {
"Package": "vroom",
"Version": "1.6.5",
@ -1259,32 +963,6 @@
],
"Hash": "cc2d62c76458d425210d1eb1478b30b4"
},
"xfun": {
"Package": "xfun",
"Version": "0.49",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"grDevices",
"stats",
"tools"
],
"Hash": "8687398773806cfff9401a2feca96298"
},
"xml2": {
"Package": "xml2",
"Version": "1.3.6",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"cli",
"methods",
"rlang"
],
"Hash": "1d0336142f4cd25d8d23cd3ba7a8fb61"
},
"xtable": {
"Package": "xtable",
"Version": "1.8-4",