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agdamsbo
dbe252ad71 Deploying to gh-pages from @ agdamsbo/REDCapCAST@b6c187bf54 🚀 2024-02-28 08:50:38 +00:00
agdamsbo
da316cf503 Deploying to gh-pages from @ agdamsbo/REDCapCAST@52f35bfcad 🚀 2024-02-28 08:29:44 +00:00
agdamsbo
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7 changed files with 133 additions and 138 deletions

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@ -222,27 +222,27 @@
<h2 id="how-to-apply-these-terms-to-your-new-programs">How to Apply These Terms to Your New Programs<a class="anchor" aria-label="anchor" href="#how-to-apply-these-terms-to-your-new-programs"></a></h2> <h2 id="how-to-apply-these-terms-to-your-new-programs">How to Apply These Terms to Your New Programs<a class="anchor" aria-label="anchor" href="#how-to-apply-these-terms-to-your-new-programs"></a></h2>
<p>If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms.</p> <p>If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms.</p>
<p>To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively state the exclusion of warranty; and each file should have at least the “copyright” line and a pointer to where the full notice is found.</p> <p>To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively state the exclusion of warranty; and each file should have at least the “copyright” line and a pointer to where the full notice is found.</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode R"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="sc">&lt;</span>one line to give the program<span class="st">'s name and a brief idea of what it does.&gt;</span></span> <div class="sourceCode" id="cb1"><pre class="sourceCode R"><code class="sourceCode r"><span id="cb1-1"><a href="#cb1-1" tabindex="-1"></a><span class="sc">&lt;</span>one line to give the program<span class="st">'s name and a brief idea of what it does.&gt;</span></span>
<span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="st">Copyright (C) &lt;year&gt; &lt;name of author&gt;</span></span> <span id="cb1-2"><a href="#cb1-2" tabindex="-1"></a><span class="st">Copyright (C) &lt;year&gt; &lt;name of author&gt;</span></span>
<span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a></span> <span id="cb1-3"><a href="#cb1-3" tabindex="-1"></a></span>
<span id="cb1-4"><a href="#cb1-4" aria-hidden="true" tabindex="-1"></a><span class="st">This program is free software: you can redistribute it and/or modify</span></span> <span id="cb1-4"><a href="#cb1-4" tabindex="-1"></a><span class="st">This program is free software: you can redistribute it and/or modify</span></span>
<span id="cb1-5"><a href="#cb1-5" aria-hidden="true" tabindex="-1"></a><span class="st">it under the terms of the GNU General Public License as published by</span></span> <span id="cb1-5"><a href="#cb1-5" tabindex="-1"></a><span class="st">it under the terms of the GNU General Public License as published by</span></span>
<span id="cb1-6"><a href="#cb1-6" aria-hidden="true" tabindex="-1"></a><span class="st">the Free Software Foundation, either version 3 of the License, or</span></span> <span id="cb1-6"><a href="#cb1-6" tabindex="-1"></a><span class="st">the Free Software Foundation, either version 3 of the License, or</span></span>
<span id="cb1-7"><a href="#cb1-7" aria-hidden="true" tabindex="-1"></a><span class="st">(at your option) any later version.</span></span> <span id="cb1-7"><a href="#cb1-7" tabindex="-1"></a><span class="st">(at your option) any later version.</span></span>
<span id="cb1-8"><a href="#cb1-8" aria-hidden="true" tabindex="-1"></a></span> <span id="cb1-8"><a href="#cb1-8" tabindex="-1"></a></span>
<span id="cb1-9"><a href="#cb1-9" aria-hidden="true" tabindex="-1"></a><span class="st">This program is distributed in the hope that it will be useful,</span></span> <span id="cb1-9"><a href="#cb1-9" tabindex="-1"></a><span class="st">This program is distributed in the hope that it will be useful,</span></span>
<span id="cb1-10"><a href="#cb1-10" aria-hidden="true" tabindex="-1"></a><span class="st">but WITHOUT ANY WARRANTY; without even the implied warranty of</span></span> <span id="cb1-10"><a href="#cb1-10" tabindex="-1"></a><span class="st">but WITHOUT ANY WARRANTY; without even the implied warranty of</span></span>
<span id="cb1-11"><a href="#cb1-11" aria-hidden="true" tabindex="-1"></a><span class="st">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></span> <span id="cb1-11"><a href="#cb1-11" tabindex="-1"></a><span class="st">MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></span>
<span id="cb1-12"><a href="#cb1-12" aria-hidden="true" tabindex="-1"></a><span class="st">GNU General Public License for more details.</span></span> <span id="cb1-12"><a href="#cb1-12" tabindex="-1"></a><span class="st">GNU General Public License for more details.</span></span>
<span id="cb1-13"><a href="#cb1-13" aria-hidden="true" tabindex="-1"></a></span> <span id="cb1-13"><a href="#cb1-13" tabindex="-1"></a></span>
<span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a><span class="st">You should have received a copy of the GNU General Public License</span></span> <span id="cb1-14"><a href="#cb1-14" tabindex="-1"></a><span class="st">You should have received a copy of the GNU General Public License</span></span>
<span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a><span class="st">along with this program. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span></span></code></pre></div> <span id="cb1-15"><a href="#cb1-15" tabindex="-1"></a><span class="st">along with this program. If not, see &lt;http://www.gnu.org/licenses/&gt;.</span></span></code></pre></div>
<p>Also add information on how to contact you by electronic and paper mail.</p> <p>Also add information on how to contact you by electronic and paper mail.</p>
<p>If the program does terminal interaction, make it output a short notice like this when it starts in an interactive mode:</p> <p>If the program does terminal interaction, make it output a short notice like this when it starts in an interactive mode:</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode R"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="sc">&lt;</span>program<span class="sc">&gt;</span> <span class="fu">Copyright</span> (C) <span class="sc">&lt;</span>year<span class="sc">&gt;</span> <span class="er">&lt;</span>name of author<span class="sc">&gt;</span></span> <div class="sourceCode" id="cb2"><pre class="sourceCode R"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="sc">&lt;</span>program<span class="sc">&gt;</span> <span class="fu">Copyright</span> (C) <span class="sc">&lt;</span>year<span class="sc">&gt;</span> <span class="er">&lt;</span>name of author<span class="sc">&gt;</span></span>
<span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>This program comes with ABSOLUTELY NO WARRANTY; <span class="cf">for</span> details type <span class="st">'show w'</span>.</span> <span id="cb2-2"><a href="#cb2-2" tabindex="-1"></a>This program comes with ABSOLUTELY NO WARRANTY; <span class="cf">for</span> details type <span class="st">'show w'</span>.</span>
<span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a>This is free software, and you are welcome to redistribute it</span> <span id="cb2-3"><a href="#cb2-3" tabindex="-1"></a>This is free software, and you are welcome to redistribute it</span>
<span id="cb2-4"><a href="#cb2-4" aria-hidden="true" tabindex="-1"></a>under certain conditions; type <span class="st">'show c'</span> <span class="cf">for</span> details.</span></code></pre></div> <span id="cb2-4"><a href="#cb2-4" tabindex="-1"></a>under certain conditions; type <span class="st">'show c'</span> <span class="cf">for</span> details.</span></code></pre></div>
<p>The hypothetical commands <code>show w</code> and <code>show c</code> should show the appropriate parts of the General Public License. Of course, your programs commands might be different; for a GUI interface, you would use an “about box”.</p> <p>The hypothetical commands <code>show w</code> and <code>show c</code> should show the appropriate parts of the General Public License. Of course, your programs commands might be different; for a GUI interface, you would use an “about box”.</p>
<p>You should also get your employer (if you work as a programmer) or school, if any, to sign a “copyright disclaimer” for the program, if necessary. For more information on this, and how to apply and follow the GNU GPL, see &lt;<a href="http://www.gnu.org/licenses/" class="external-link uri">http://www.gnu.org/licenses/</a>&gt;.</p> <p>You should also get your employer (if you work as a programmer) or school, if any, to sign a “copyright disclaimer” for the program, if necessary. For more information on this, and how to apply and follow the GNU GPL, see &lt;<a href="http://www.gnu.org/licenses/" class="external-link uri">http://www.gnu.org/licenses/</a>&gt;.</p>
<p>The GNU General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. But first, please read &lt;<a href="http://www.gnu.org/philosophy/why-not-lgpl.html" class="external-link uri">http://www.gnu.org/philosophy/why-not-lgpl.html</a>&gt;.</p> <p>The GNU General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. But first, please read &lt;<a href="http://www.gnu.org/philosophy/why-not-lgpl.html" class="external-link uri">http://www.gnu.org/philosophy/why-not-lgpl.html</a>&gt;.</p>

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@ -144,7 +144,7 @@ projects with “Development” status).</p>
<span><span class="op">)</span></span></code></pre></div> <span><span class="op">)</span></span></code></pre></div>
<p>In the <a href="https://agdamsbo.github.io/redcap-r-handbook/" class="external-link">“REDCap R <p>In the <a href="https://agdamsbo.github.io/redcap-r-handbook/" class="external-link">“REDCap R
Handbook”</a> more is written on interfacing with REDCap in R using the Handbook”</a> more is written on interfacing with REDCap in R using the
<code><a href="https://keyring.r-lib.org/" class="external-link">library(keyring)</a></code>to store credentials in <a href="https://agdamsbo.github.io/redcap-r-handbook/access.html#sec-getting-access" class="external-link">chapter <code><a href="https://keyring.r-lib.org/" class="external-link">library(keyring)</a></code>to store credentials in <a href="https://agdamsbo.github.io/redcap-r-handbook/doc/access.html#sec-getting-access" class="external-link">chapter
1.1</a>.</p> 1.1</a>.</p>
</div> </div>
</div> </div>

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@ -100,23 +100,23 @@ demonstration of the functions.</p>
</h2> </h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -142,12 +142,12 @@ demonstration of the functions.</p>
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@ -256,11 +256,11 @@ demonstration of the functions.</p>
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@ -328,7 +328,7 @@ demonstration of the functions.</p>
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</div> </div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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@ -118,7 +118,7 @@
<li><p><code><a href="reference/redcap_wider.html">redcap_wider()</a></code>: joins and pivots a list of data frames with repeated instruments to a wide format utilizing the <a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link"><code>tidyr::pivot_wider()</code></a> from the <a href="https://www.tidyverse.org/" class="external-link">tidyverse</a>.</p></li> <li><p><code><a href="reference/redcap_wider.html">redcap_wider()</a></code>: joins and pivots a list of data frames with repeated instruments to a wide format utilizing the <a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link"><code>tidyr::pivot_wider()</code></a> from the <a href="https://www.tidyverse.org/" class="external-link">tidyverse</a>.</p></li>
<li><p><code><a href="reference/easy_redcap.html">easy_redcap()</a></code>: combines secure API key storage with the <code>keyring</code>-package, focused data retrieval and optional widening. This is the recommended approach for easy data access and analysis.</p></li> <li><p><code><a href="reference/easy_redcap.html">easy_redcap()</a></code>: combines secure API key storage with the <code>keyring</code>-package, focused data retrieval and optional widening. This is the recommended approach for easy data access and analysis.</p></li>
<li><p><code><a href="reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: Converts a data set to a data dictionary for upload to a new REDCap database. Variables (fields) and instruments in a REDCap data base are defined by this data dictionary.</p></li> <li><p><code><a href="reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>: Converts a data set to a data dictionary for upload to a new REDCap database. Variables (fields) and instruments in a REDCap data base are defined by this data dictionary.</p></li>
<li><p><code><a href="reference/shiny_cast.html">shiny_cast()</a></code>: <a href="https://www.rstudio.com/products/shiny/" class="external-link">Shiny</a> application to ease the process of converting a spreadsheet/data set to a REDCap database. The app runs locally and data is transferred securely. You can just create and upload the data dictionary, but you can also transfer the given data in the same process.</p></li> <li><p><code><a href="reference/shiny_cast.html">shiny_cast()</a></code>: <a href="https://www.rstudio.com/products/shiny/" class="external-link">Shiny</a> application to ease the process of converting a spreadsheet/data set to a REDCap database. The app runs locally and data is transferred securely. You can just create and upload the data dictionary, but you can also transfer the given data in the same process. The app is <a href="https://agdamsbo.shinyapps.io/redcapcast/" class="external-link">hosted on shinyapps.io</a> while I work on a <a href="https://posit-dev.github.io/r-shinylive/" class="external-link">shinylive</a> implementation.</p></li>
</ul> </ul>
</div> </div>
<div class="section level2"> <div class="section level2">

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@ -53,7 +53,7 @@
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 class="pkg-version" data-toc-text="24.2.1" id="redcapcast-2421">REDCapCAST 24.2.1<a class="anchor" aria-label="anchor" href="#redcapcast-2421"></a></h2> <h2 class="pkg-version" data-toc-text="24.2.1" id="redcapcast-2421">REDCapCAST 24.2.1<a class="anchor" aria-label="anchor" href="#redcapcast-2421"></a></h2><p class="text-muted">CRAN release: 2024-02-28</p>
<div class="section level4"> <div class="section level4">
<h4 id="functions-24-2-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-2-1"></a></h4> <h4 id="functions-24-2-1">Functions<a class="anchor" aria-label="anchor" href="#functions-24-2-1"></a></h4>
<ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li> <ul><li><p>Fix: <code><a href="../reference/ds2dd.html">ds2dd()</a></code>: uses correct default dd column names. Will be deprecated.</p></li>
@ -66,14 +66,9 @@
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="other-24-2-1">Other<a class="anchor" aria-label="anchor" href="#other-24-2-1"></a></h4> <h4 id="other-24-2-1">Other<a class="anchor" aria-label="anchor" href="#other-24-2-1"></a></h4>
<p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package.</p> <p>I believe <code>renv</code> has now been added and runs correctly. After clone, do <code><a href="https://rstudio.github.io/renv/reference/restore.html" class="external-link">renv::restore()</a></code> to install all necessary package to modify the package. This seems to always be back and forth. <code>renv</code> may be on its way out again.</p>
<p>Added a Code of Conduct.</p>
</div> </div>
<div class="section level4">
<h4 id="whishes-before-cran-release-24-2-1">Whishes before CRAN release<a class="anchor" aria-label="anchor" href="#whishes-before-cran-release-24-2-1"></a></h4>
<ul><li><p>Vignette for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
<li><p>Tests for <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code></p></li>
<li><p>Tests for new functions.</p></li>
</ul></div>
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p> <h2 class="pkg-version" data-toc-text="24.1.1" id="redcapcast-2411">REDCapCAST 24.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2411"></a></h2><p class="text-muted">CRAN release: 2024-01-09</p>

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@ -1,11 +1,11 @@
pandoc: 2.19.2 pandoc: 3.1.11
pkgdown: 2.0.7 pkgdown: 2.0.7
pkgdown_sha: ~ pkgdown_sha: ~
articles: articles:
Database-creation: Database-creation.html Database-creation: Database-creation.html
Introduction: Introduction.html Introduction: Introduction.html
Shiny-app: Shiny-app.html Shiny-app: Shiny-app.html
last_built: 2024-02-27T13:31Z last_built: 2024-02-28T08:50Z
urls: urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles article: https://agdamsbo.github.io/REDCapCAST/articles

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