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@ -108,10 +108,12 @@ to specify only the fields or instruments you need, and avoid to save
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any of the data locally, but always source from REDCap to avoid possibly
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any of the data locally, but always source from REDCap to avoid possibly
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insecure local storage of sensitive data.</p>
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insecure local storage of sensitive data.</p>
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="../reference/easy_redcap.html">easy_redcap</a></span><span class="op">(</span>uri <span class="op">=</span> <span class="st">"YOUR URI"</span>, </span>
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<code class="sourceCode R"><span><span class="fu"><a href="../reference/easy_redcap.html">easy_redcap</a></span><span class="op">(</span></span>
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<span> project.name <span class="op">=</span> <span class="st">"MY_PROJECT"</span>, </span>
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<span> uri <span class="op">=</span> <span class="st">"YOUR URI"</span>,</span>
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<span> widen.data <span class="op">=</span> <span class="cn">TRUE</span>,</span>
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<span> project.name <span class="op">=</span> <span class="st">"MY_PROJECT"</span>,</span>
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<span> fields <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>, <span class="st">"OTHER FIELDS"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<span> widen.data <span class="op">=</span> <span class="cn">TRUE</span>,</span>
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<span> fields <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>, <span class="st">"OTHER FIELDS"</span><span class="op">)</span></span>
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<span><span class="op">)</span></span></code></pre></div>
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</div>
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</div>
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<div class="section level2">
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<div class="section level2">
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<h2 id="splitting-the-dataset">Splitting the dataset<a class="anchor" aria-label="anchor" href="#splitting-the-dataset"></a>
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<h2 id="splitting-the-dataset">Splitting the dataset<a class="anchor" aria-label="anchor" href="#splitting-the-dataset"></a>
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@ -2232,10 +2234,12 @@ Note: as opposed to the build in datediff() this handles counting years as integ
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<p>To save the metadata as labels in the dataset, we can save field
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<p>To save the metadata as labels in the dataset, we can save field
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labels and the choices from radio buttons and dropdown features:</p>
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labels and the choices from radio buttons and dropdown features:</p>
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<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
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<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">labelled_data</span> <span class="op"><-</span> </span>
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<code class="sourceCode R"><span><span class="va">labelled_data</span> <span class="op"><-</span></span>
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<span> <span class="fu"><a href="../reference/apply_field_label.html">apply_field_label</a></span><span class="op">(</span>data<span class="op">=</span><span class="va">redcapcast_data</span>,</span>
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<span> <span class="fu"><a href="../reference/apply_field_label.html">apply_field_label</a></span><span class="op">(</span></span>
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<span> meta<span class="op">=</span><span class="va">redcapcast_meta</span><span class="op">)</span> <span class="op">|></span> </span>
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<span> data <span class="op">=</span> <span class="va">redcapcast_data</span>,</span>
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<span> <span class="fu"><a href="../reference/apply_factor_labels.html">apply_factor_labels</a></span><span class="op">(</span>meta<span class="op">=</span><span class="va">redcapcast_meta</span><span class="op">)</span></span></code></pre></div>
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<span> meta <span class="op">=</span> <span class="va">redcapcast_meta</span></span>
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<span> <span class="op">)</span> <span class="op">|></span></span>
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<span> <span class="fu"><a href="../reference/apply_factor_labels.html">apply_factor_labels</a></span><span class="op">(</span>meta <span class="op">=</span> <span class="va">redcapcast_meta</span><span class="op">)</span></span></code></pre></div>
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<p>The <code>REDCap_split</code> function splits the data set into a
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<p>The <code>REDCap_split</code> function splits the data set into a
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list of data.frames.</p>
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list of data.frames.</p>
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<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
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<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
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@ -2244,7 +2248,7 @@ list of data.frames.</p>
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<span> records <span class="op">=</span> <span class="va">labelled_data</span>,</span>
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<span> records <span class="op">=</span> <span class="va">labelled_data</span>,</span>
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<span> metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>
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<span> metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>
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<span> forms <span class="op">=</span> <span class="st">"all"</span></span>
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<span> forms <span class="op">=</span> <span class="st">"all"</span></span>
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<span> <span class="op">)</span> <span class="op">|></span> </span>
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<span> <span class="op">)</span> <span class="op">|></span></span>
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<span> <span class="co"># Next steps cleans up and removes generic columns</span></span>
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<span> <span class="co"># Next steps cleans up and removes generic columns</span></span>
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<span> <span class="fu"><a href="../reference/sanitize_split.html">sanitize_split</a></span><span class="op">(</span><span class="op">)</span></span>
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<span> <span class="fu"><a href="../reference/sanitize_split.html">sanitize_split</a></span><span class="op">(</span><span class="op">)</span></span>
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<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span></span>
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<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span></span>
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@ -2315,127 +2319,133 @@ widen the data, by transforming the list of data.frames to a single
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data.frame with one row for each subject/record_id (wide data
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data.frame with one row for each subject/record_id (wide data
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format):</p>
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format):</p>
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">wide_data</span> <span class="op"><-</span> <span class="fu"><a href="../reference/redcap_wider.html">redcap_wider</a></span><span class="op">(</span><span class="va">list</span><span class="op">)</span> </span>
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<code class="sourceCode R"><span><span class="va">wide_data</span> <span class="op"><-</span> <span class="fu"><a href="../reference/redcap_wider.html">redcap_wider</a></span><span class="op">(</span><span class="va">list</span>,</span>
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<span> event.glue <span class="op">=</span> <span class="st">"{.value}____{redcap_event_name}"</span>,</span>
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<span> inst.glue <span class="op">=</span> <span class="st">"{.value}____{redcap_repeat_instance}"</span></span>
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<span><span class="op">)</span></span>
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<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
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<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
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<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
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<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
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<span><span class="va">wide_data</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
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<span><span class="va">wide_data</span> <span class="op">|></span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
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<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
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<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
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<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
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<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "ID"</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "ID"</span></span>
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<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
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<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "CPR (Danish civil registration number)"</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "CPR (Danish civil registration number)"</span></span>
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<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
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<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
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<span><span class="co">#> $ inclusion_time : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ...</span></span>
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<span><span class="co">#> $ inclusion_time : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ...</span></span>
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<span><span class="co">#> ..- attr(*, "units")= chr "secs"</span></span>
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<span><span class="co">#> ..- attr(*, "units")= chr "secs"</span></span>
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<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
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<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
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<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
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<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Age\r\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in"| __truncated__</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Age\r\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in"| __truncated__</span></span>
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<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
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<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Age integer\r\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C"| __truncated__</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Age integer\r\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C"| __truncated__</span></span>
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<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
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<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Legal sex"</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Legal sex"</span></span>
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<span><span class="co">#> $ cohabitation : 'labelled' chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
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<span><span class="co">#> $ cohabitation : 'labelled' chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Cohabitation"</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Cohabitation"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> $ hypertension : 'labelled' chr [1:6] "No" "No" "Yes" NA ...</span></span>
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<span><span class="co">#> $ hypertension : 'labelled' chr [1:6] "No" "No" "Yes" NA ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Hypertension"</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Hypertension"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> $ diabetes : 'labelled' chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
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<span><span class="co">#> $ diabetes : 'labelled' chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Diabetes"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Diabetes"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> $ region : 'labelled' chr [1:6] "East" "South" "North" NA ...</span></span>
|
<span><span class="co">#> $ region : 'labelled' chr [1:6] "East" "South" "North" NA ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Region"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Region"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:4] "1" "2" "3" "4"</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:4] "1" "2" "3" "4"</span></span>
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||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:4] "North" "East" "South" "West"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:4] "North" "East" "South" "West"</span></span>
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<span><span class="co">#> $ baseline_data_start_complete: chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
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<span><span class="co">#> $ baseline_data_start_complete : chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
|
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<span><span class="co">#> $ mrs_assessed_inclusion : 'labelled' chr [1:6] "Yes" "Yes" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____inclusion : 'labelled' chr [1:6] "Yes" "Yes" NA NA ...</span></span>
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<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
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||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
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||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
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<span><span class="co">#> $ mrs_assessed_follow1 : 'labelled' chr [1:6] NA "Yes" "Yes" NA ...</span></span>
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<span><span class="co">#> $ mrs_assessed____follow1 : 'labelled' chr [1:6] NA "Yes" "Yes" NA ...</span></span>
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||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_follow2 : 'labelled' chr [1:6] NA NA "Yes" NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____follow2 : 'labelled' chr [1:6] NA NA "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Assesed"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:2] "1" "2"</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:2] "Yes" "No"</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
<span><span class="co">#> $ mrs_date____inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow2 : Date[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow2 : Date[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_inclusion : 'labelled' num [1:6] 1 1 NA NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____inclusion : 'labelled' num [1:6] 1 1 NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow1 : 'labelled' num [1:6] NA 3 2 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow1 : 'labelled' num [1:6] NA 3 2 NA NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow2 : 'labelled' num [1:6] NA NA 1 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow2 : 'labelled' num [1:6] NA NA 1 NA NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "mRS score"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:6] "0" "1" "2" "3" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow1 : 'labelled' chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow1 : 'labelled' chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow2 : 'labelled' chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow2 : 'labelled' chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Age at event"</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow1 : 'labelled' chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow1 : 'labelled' chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow2 : 'labelled' chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow2 : 'labelled' chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow1 : 'labelled' chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow1 : 'labelled' chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow2 : 'labelled' chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow2 : 'labelled' chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
<span><span class="co">#> ..- attr(*, "label")= chr "Neurovascular event"</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
<span><span class="co">#> ..- attr(*, "labels")= Named chr [1:5] "1" "2" "3" "4" ...</span></span>
|
||||||
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
<span><span class="co">#> .. ..- attr(*, "names")= chr [1:5] "TIA" "AIS" "ICH" "SAH" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow1: chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
|
<span><span class="co">#> $ new_event_complete____3____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
|
||||||
|
<p>Transfer suffixes to labels:</p>
|
||||||
|
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
|
||||||
|
<code class="sourceCode R"><span><span class="va">wide_data_suffixes</span> <span class="op"><-</span> <span class="va">wide_data</span> <span class="op">|></span> <span class="fu"><a href="../reference/suffix2label.html">suffix2label</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||||
</div>
|
</div>
|
||||||
<div class="section level2">
|
<div class="section level2">
|
||||||
<h2 id="creating-a-nice-table">Creating a nice table<a class="anchor" aria-label="anchor" href="#creating-a-nice-table"></a>
|
<h2 id="creating-a-nice-table">Creating a nice table<a class="anchor" aria-label="anchor" href="#creating-a-nice-table"></a>
|
||||||
</h2>
|
</h2>
|
||||||
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
|
<div class="sourceCode" id="cb10"><pre class="downlit sourceCode r">
|
||||||
<code class="sourceCode R"><span><span class="va">wide_data</span> <span class="op">|></span> </span>
|
<code class="sourceCode R"><span><span class="va">wide_data_suffixes</span> <span class="op">|></span></span>
|
||||||
<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="va">sex</span>,<span class="va">hypertension</span>, <span class="va">diabetes</span><span class="op">)</span> <span class="op">|></span> </span>
|
<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="va">sex</span>, <span class="va">hypertension</span>, <span class="va">diabetes</span>,<span class="va">mrs_score____follow2</span><span class="op">)</span> <span class="op">|></span></span>
|
||||||
<span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">tbl_summary</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
<span> <span class="fu">gtsummary</span><span class="fu">::</span><span class="fu"><a href="https://www.danieldsjoberg.com/gtsummary/reference/tbl_summary.html" class="external-link">tbl_summary</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||||
<div id="ulbfdpbcyv" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
<div id="ulbfdpbcyv" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||||
<style>#ulbfdpbcyv table {
|
<style>#ulbfdpbcyv table {
|
||||||
@ -2938,6 +2948,18 @@ format):</p>
|
|||||||
<td headers="label" class="gt_row gt_left"> Unknown</td>
|
<td headers="label" class="gt_row gt_left"> Unknown</td>
|
||||||
<td headers="stat_0" class="gt_row gt_center">1</td>
|
<td headers="stat_0" class="gt_row gt_center">1</td>
|
||||||
</tr>
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td headers="label" class="gt_row gt_left">mRS score (follow2)</td>
|
||||||
|
<td headers="stat_0" class="gt_row gt_center"><br></td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td headers="label" class="gt_row gt_left"> 1</td>
|
||||||
|
<td headers="stat_0" class="gt_row gt_center">1 (100%)</td>
|
||||||
|
</tr>
|
||||||
|
<tr>
|
||||||
|
<td headers="label" class="gt_row gt_left"> Unknown</td>
|
||||||
|
<td headers="stat_0" class="gt_row gt_center">5</td>
|
||||||
|
</tr>
|
||||||
</tbody>
|
</tbody>
|
||||||
<tfoot class="gt_footnotes"><tr>
|
<tfoot class="gt_footnotes"><tr>
|
||||||
<td class="gt_footnote" colspan="2">
|
<td class="gt_footnote" colspan="2">
|
||||||
|
|||||||
@ -93,56 +93,56 @@ and launch the app as follows:</p>
|
|||||||
<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
|
<span><span class="co">#> Joining with `by = join_by(record_id)`</span></span>
|
||||||
<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span></span>
|
<span><span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="va">ds</span><span class="op">)</span></span>
|
||||||
<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
|
<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
|
||||||
<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
|
<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
|
||||||
<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
|
<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
|
||||||
<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
|
<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
|
||||||
<span><span class="co">#> $ inclusion_time : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ...</span></span>
|
<span><span class="co">#> $ inclusion_time : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ...</span></span>
|
||||||
<span><span class="co">#> ..- attr(*, "units")= chr "secs"</span></span>
|
<span><span class="co">#> ..- attr(*, "units")= chr "secs"</span></span>
|
||||||
<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
|
<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
|
||||||
<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
|
<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
|
||||||
<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
|
<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
|
||||||
<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
|
<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
|
||||||
<span><span class="co">#> $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
|
<span><span class="co">#> $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
|
||||||
<span><span class="co">#> $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
|
<span><span class="co">#> $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
|
||||||
<span><span class="co">#> $ baseline_data_start_complete: chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
|
<span><span class="co">#> $ baseline_data_start_complete : chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
<span><span class="co">#> $ mrs_date____inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow2 : Date[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow2 : Date[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow1 : chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow1 : chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow1: chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____3____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> - attr(*, "problems")=<externalptr></span></span></code></pre></div>
|
<span><span class="co">#> - attr(*, "problems")=<externalptr></span></span></code></pre></div>
|
||||||
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
|
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
|
||||||
<code class="sourceCode R"><span><span class="va">ds</span><span class="op">|></span> </span>
|
<code class="sourceCode R"><span><span class="va">ds</span><span class="op">|></span> </span>
|
||||||
@ -150,55 +150,55 @@ and launch the app as follows:</p>
|
|||||||
<span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span> <span class="op">|></span> </span>
|
<span> <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"data"</span><span class="op">)</span> <span class="op">|></span> </span>
|
||||||
<span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
|
<span> <span class="fu"><a href="https://rdrr.io/r/utils/str.html" class="external-link">str</a></span><span class="op">(</span><span class="op">)</span></span>
|
||||||
<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
|
<span><span class="co">#> tibble [6 × 49] (S3: tbl_df/tbl/data.frame)</span></span>
|
||||||
<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
|
<span><span class="co">#> $ record_id : num [1:6] 1 2 3 4 5 6</span></span>
|
||||||
<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
|
<span><span class="co">#> $ cpr : chr [1:6] "1203401OB4" "0102342303" "2301569823" "0204051342" ...</span></span>
|
||||||
<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
|
<span><span class="co">#> $ inclusion : Date[1:6], format: "2023-03-13" "2023-03-01" ...</span></span>
|
||||||
<span><span class="co">#> $ inclusion_time : chr [1:6] "12:38:49" "10:38:57" "12:01:07" "20:39:19" ...</span></span>
|
<span><span class="co">#> $ inclusion_time : chr [1:6] "12:38:49" "10:38:57" "12:01:07" "20:39:19" ...</span></span>
|
||||||
<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
|
<span><span class="co">#> $ dob : Date[1:6], format: "1940-03-12" "1934-02-01" ...</span></span>
|
||||||
<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
|
<span><span class="co">#> $ age : num [1:6] 83 89.1 66.1 117.9 126.2 ...</span></span>
|
||||||
<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
|
<span><span class="co">#> $ age_integer : num [1:6] 83 89 66 117 126 91</span></span>
|
||||||
<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
|
<span><span class="co">#> $ sex : chr [1:6] "female" "male" "male" "female" ...</span></span>
|
||||||
<span><span class="co">#> $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
|
<span><span class="co">#> $ cohabitation : chr [1:6] "Yes" "Yes" "No" NA ...</span></span>
|
||||||
<span><span class="co">#> $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ hypertension : chr [1:6] "No" "No" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ diabetes : chr [1:6] "Yes" "No" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
|
<span><span class="co">#> $ region : chr [1:6] "East" "South" "North" NA ...</span></span>
|
||||||
<span><span class="co">#> $ baseline_data_start_complete: chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
|
<span><span class="co">#> $ baseline_data_start_complete : chr [1:6] "Incomplete" "Incomplete" "Incomplete" "Incomplete" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____inclusion : chr [1:6] "Yes" "Yes" NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____follow1 : chr [1:6] NA "Yes" "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_assessed_follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
|
<span><span class="co">#> $ mrs_assessed____follow2 : chr [1:6] NA NA "Yes" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
<span><span class="co">#> $ mrs_date____inclusion : Date[1:6], format: "2023-03-13" "2023-03-07" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow1 : Date[1:6], format: NA "2023-03-09" ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_date_follow2 : Date[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_date____follow2 : Date[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____inclusion : num [1:6] 1 1 NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow1 : num [1:6] NA 3 2 NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_score_follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
|
<span><span class="co">#> $ mrs_score____follow2 : num [1:6] NA NA 1 NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____inclusion : chr [1:6] "Incomplete" "Incomplete" NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow1 : chr [1:6] NA "Incomplete" "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ mrs_complete_follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
<span><span class="co">#> $ mrs_complete____follow2 : chr [1:6] NA NA "Incomplete" NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow1 : POSIXct[1:6], format: NA "2024-01-18 12:49:42" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_1_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____1____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow1 : num [1:6] NA NA NA 96 127 NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_1_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____1____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow1 : chr [1:6] NA "TIA" "AIS" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_1_follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
<span><span class="co">#> $ event_type____1____follow2 : chr [1:6] NA NA "ICH" "AIS" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow1: chr [1:6] NA "Incomplete" "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_1_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____1____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_2_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____2____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow1 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_datetime_3_follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
<span><span class="co">#> $ event_datetime____3____follow2 : POSIXct[1:6], format: NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow1 : num [1:6] NA NA NA 105 127 NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_2_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____2____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow1 : num [1:6] NA NA NA NA NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_age_3_follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
<span><span class="co">#> $ event_age____3____follow2 : num [1:6] NA NA NA 118 NA NA</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow1 : chr [1:6] NA NA "ICH" "TIA" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_2_follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
<span><span class="co">#> $ event_type____2____follow2 : chr [1:6] NA NA "TIA" "ICH" ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow1 : chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow1 : chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ event_type_3_follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
<span><span class="co">#> $ event_type____3____follow2 : chr [1:6] NA NA "AIS" "Unknown" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow1: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_2_follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
<span><span class="co">#> $ new_event_complete____2____follow2: chr [1:6] NA NA "Incomplete" "Incomplete" ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow1: chr [1:6] NA NA NA NA ...</span></span>
|
<span><span class="co">#> $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ...</span></span>
|
||||||
<span><span class="co">#> $ new_event_complete_3_follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
|
<span><span class="co">#> $ new_event_complete____3____follow2: chr [1:6] NA NA "Incomplete" "Complete" ...</span></span></code></pre></div>
|
||||||
<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
|
<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
|
||||||
<code class="sourceCode R"><span><span class="va">ds</span><span class="op">|></span> </span>
|
<code class="sourceCode R"><span><span class="va">ds</span><span class="op">|></span> </span>
|
||||||
<span> <span class="fu"><a href="../reference/ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="../reference/redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span><span class="op">)</span><span class="op">|></span> </span>
|
<span> <span class="fu"><a href="../reference/ds2dd_detailed.html">ds2dd_detailed</a></span><span class="op">(</span>metadata <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/names.html" class="external-link">names</a></span><span class="op">(</span><span class="fu">REDCapCAST</span><span class="fu">::</span><span class="va"><a href="../reference/redcapcast_meta.html">redcapcast_meta</a></span><span class="op">)</span><span class="op">)</span><span class="op">|></span> </span>
|
||||||
|
|||||||
@ -5,7 +5,7 @@ articles:
|
|||||||
Database-creation: Database-creation.html
|
Database-creation: Database-creation.html
|
||||||
REDCapCAST: REDCapCAST.html
|
REDCapCAST: REDCapCAST.html
|
||||||
Shiny-app: Shiny-app.html
|
Shiny-app: Shiny-app.html
|
||||||
last_built: 2024-11-28T13:54Z
|
last_built: 2024-11-28T20:10Z
|
||||||
urls:
|
urls:
|
||||||
reference: https://agdamsbo.github.io/REDCapCAST/reference
|
reference: https://agdamsbo.github.io/REDCapCAST/reference
|
||||||
article: https://agdamsbo.github.io/REDCapCAST/articles
|
article: https://agdamsbo.github.io/REDCapCAST/articles
|
||||||
|
|||||||
@ -433,6 +433,12 @@
|
|||||||
<dd>Extended string splitting</dd>
|
<dd>Extended string splitting</dd>
|
||||||
</dl><dl><dt>
|
</dl><dl><dt>
|
||||||
|
|
||||||
|
<code><a href="suffix2label.html">suffix2label()</a></code>
|
||||||
|
|
||||||
|
</dt>
|
||||||
|
<dd>Transfer variable name suffix to label in widened data</dd>
|
||||||
|
</dl><dl><dt>
|
||||||
|
|
||||||
<code><a href="time_only_correction.html">time_only_correction()</a></code>
|
<code><a href="time_only_correction.html">time_only_correction()</a></code>
|
||||||
|
|
||||||
</dt>
|
</dt>
|
||||||
|
|||||||
@ -55,8 +55,8 @@ split by <a href="REDCap_split.html">REDCap_split</a>.</p>
|
|||||||
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||||
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">redcap_wider</span><span class="op">(</span></span>
|
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">redcap_wider</span><span class="op">(</span></span>
|
||||||
<span> <span class="va">data</span>,</span>
|
<span> <span class="va">data</span>,</span>
|
||||||
<span> event.glue <span class="op">=</span> <span class="st">"{.value}_{redcap_event_name}"</span>,</span>
|
<span> event.glue <span class="op">=</span> <span class="st">"{.value}____{redcap_event_name}"</span>,</span>
|
||||||
<span> inst.glue <span class="op">=</span> <span class="st">"{.value}_{redcap_repeat_instance}"</span></span>
|
<span> inst.glue <span class="op">=</span> <span class="st">"{.value}____{redcap_repeat_instance}"</span></span>
|
||||||
<span><span class="op">)</span></span></code></pre></div>
|
<span><span class="op">)</span></span></code></pre></div>
|
||||||
</div>
|
</div>
|
||||||
|
|
||||||
@ -99,10 +99,10 @@ split by <a href="REDCap_split.html">REDCap_split</a>.</p>
|
|||||||
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list1</span><span class="op">)</span></span></span>
|
<span class="r-in"><span><span class="fu">redcap_wider</span><span class="op">(</span><span class="va">list1</span><span class="op">)</span></span></span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 2 × 4</span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 2 × 4</span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> record_id age_baseline age_followup gender</span>
|
<span class="r-out co"><span class="r-pr">#></span> record_id age____baseline age____followup gender</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span> </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 1 25 27 male </span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 1 25 27 male </span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2 26 28 female</span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2 26 28 female</span>
|
||||||
<span class="r-in"><span><span class="co"># Simpel with two instruments</span></span></span>
|
<span class="r-in"><span><span class="co"># Simpel with two instruments</span></span></span>
|
||||||
<span class="r-in"><span><span class="va">list2</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span></span>
|
<span class="r-in"><span><span class="va">list2</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span></span></span>
|
||||||
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
|
<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span></span></span>
|
||||||
@ -155,12 +155,12 @@ split by <a href="REDCap_split.html">REDCap_split</a>.</p>
|
|||||||
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
||||||
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
<span class="r-msg co"><span class="r-pr">#></span> Joining with `by = join_by(record_id)`</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 2 × 8</span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 2 × 8</span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> record_id age_baseline age_followup dist_1_baseline dist_1_followup</span>
|
<span class="r-out co"><span class="r-pr">#></span> record_id age____baseline age____followup dist____1____baseline</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><dbl></span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 1 25 27 40 25</span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 1 25 27 40</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2 26 28 28 23</span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> 2 26 28 28</span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 3 more variables: dist_2_baseline <dbl>, dist_2_followup <dbl>,</span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 4 more variables: dist____1____followup <dbl>, dist____2____baseline <dbl>,</span></span>
|
||||||
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># gender <chr></span></span>
|
<span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># dist____2____followup <dbl>, gender <chr></span></span>
|
||||||
</code></pre></div>
|
</code></pre></div>
|
||||||
</div>
|
</div>
|
||||||
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||||
|
|||||||
100
reference/suffix2label.html
Normal file
100
reference/suffix2label.html
Normal file
@ -0,0 +1,100 @@
|
|||||||
|
<!DOCTYPE html>
|
||||||
|
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Transfer variable name suffix to label in widened data — suffix2label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Transfer variable name suffix to label in widened data — suffix2label"><meta name="description" content="Transfer variable name suffix to label in widened data"><meta property="og:description" content="Transfer variable name suffix to label in widened data"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
|
||||||
|
<a href="#main" class="visually-hidden-focusable">Skip to contents</a>
|
||||||
|
|
||||||
|
|
||||||
|
<nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
|
||||||
|
|
||||||
|
<a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
|
||||||
|
|
||||||
|
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.11.4</small>
|
||||||
|
|
||||||
|
|
||||||
|
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
|
||||||
|
<span class="navbar-toggler-icon"></span>
|
||||||
|
</button>
|
||||||
|
|
||||||
|
<div id="navbar" class="collapse navbar-collapse ms-3">
|
||||||
|
<ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/REDCapCAST.html">Get started</a></li>
|
||||||
|
<li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
|
||||||
|
<li class="nav-item dropdown">
|
||||||
|
<button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
|
||||||
|
<ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
|
||||||
|
<li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
|
||||||
|
</ul></li>
|
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|
<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
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</ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
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<input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
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<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
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||||||
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</ul></div>
|
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</div>
|
||||||
|
</nav><div class="container template-reference-topic">
|
||||||
|
<div class="row">
|
||||||
|
<main id="main" class="col-md-9"><div class="page-header">
|
||||||
|
<img src="../logo.png" class="logo" alt=""><h1>Transfer variable name suffix to label in widened data</h1>
|
||||||
|
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||||
|
<div class="d-none name"><code>suffix2label.Rd</code></div>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
<div class="ref-description section level2">
|
||||||
|
<p>Transfer variable name suffix to label in widened data</p>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
<div class="section level2">
|
||||||
|
<h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
|
||||||
|
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">suffix2label</span><span class="op">(</span></span>
|
||||||
|
<span> <span class="va">data</span>,</span>
|
||||||
|
<span> suffix.sep <span class="op">=</span> <span class="st">"____"</span>,</span>
|
||||||
|
<span> attr <span class="op">=</span> <span class="st">"label"</span>,</span>
|
||||||
|
<span> glue.str <span class="op">=</span> <span class="st">"{label} ({paste(suffixes,collapse=', ')})"</span></span>
|
||||||
|
<span><span class="op">)</span></span></code></pre></div>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
<div class="section level2">
|
||||||
|
<h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
|
||||||
|
|
||||||
|
|
||||||
|
<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
|
||||||
|
<dd><p>data.frame</p></dd>
|
||||||
|
|
||||||
|
|
||||||
|
<dt id="arg-suffix-sep">suffix.sep<a class="anchor" aria-label="anchor" href="#arg-suffix-sep"></a></dt>
|
||||||
|
<dd><p>string to split suffix(es). Passed to <a href="https://rdrr.io/r/base/strsplit.html" class="external-link">strsplit</a></p></dd>
|
||||||
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|
||||||
|
|
||||||
|
<dt id="arg-attr">attr<a class="anchor" aria-label="anchor" href="#arg-attr"></a></dt>
|
||||||
|
<dd><p>label attribute. Default is "label"</p></dd>
|
||||||
|
|
||||||
|
|
||||||
|
<dt id="arg-glue-str">glue.str<a class="anchor" aria-label="anchor" href="#arg-glue-str"></a></dt>
|
||||||
|
<dd><p>glue string for new label. Available variables are "label"
|
||||||
|
and "suffixes"</p></dd>
|
||||||
|
|
||||||
|
</dl></div>
|
||||||
|
<div class="section level2">
|
||||||
|
<h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
|
||||||
|
<p>data.frame</p>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
</main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
|
||||||
|
</nav></aside></div>
|
||||||
|
|
||||||
|
|
||||||
|
<footer><div class="pkgdown-footer-left">
|
||||||
|
<p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
<div class="pkgdown-footer-right">
|
||||||
|
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
|
||||||
|
</div>
|
||||||
|
|
||||||
|
</footer></div>
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
</body></html>
|
||||||
|
|
||||||
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@ -75,6 +75,7 @@
|
|||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html</loc></url>
|
||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html</loc></url>
|
||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html</loc></url>
|
||||||
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html</loc></url>
|
||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html</loc></url>
|
||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html</loc></url>
|
||||||
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html</loc></url>
|
<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html</loc></url>
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user