Deploying to gh-pages from @ agdamsbo/REDCapCAST@0f17301f8a 🚀

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agdamsbo 2023-12-20 15:02:38 +00:00
parent 105035c64d
commit f2a7360d3c
4 changed files with 109 additions and 108 deletions

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@ -98,23 +98,23 @@ demonstration of the functions.</p>
</h2> </h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
<div id="fctdbyyeeg" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"> <div id="keljelwies" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>#fctdbyyeeg table { <style>#keljelwies table {
font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji'; font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';
-webkit-font-smoothing: antialiased; -webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale; -moz-osx-font-smoothing: grayscale;
} }
#fctdbyyeeg thead, #fctdbyyeeg tbody, #fctdbyyeeg tfoot, #fctdbyyeeg tr, #fctdbyyeeg td, #fctdbyyeeg th { #keljelwies thead, #keljelwies tbody, #keljelwies tfoot, #keljelwies tr, #keljelwies td, #keljelwies th {
border-style: none; border-style: none;
} }
#fctdbyyeeg p { #keljelwies p {
margin: 0; margin: 0;
padding: 0; padding: 0;
} }
#fctdbyyeeg .gt_table { #keljelwies .gt_table {
display: table; display: table;
border-collapse: collapse; border-collapse: collapse;
line-height: normal; line-height: normal;
@ -140,12 +140,12 @@ demonstration of the functions.</p>
border-left-color: #D3D3D3; border-left-color: #D3D3D3;
} }
#fctdbyyeeg .gt_caption { #keljelwies .gt_caption {
padding-top: 4px; padding-top: 4px;
padding-bottom: 4px; padding-bottom: 4px;
} }
#fctdbyyeeg .gt_title { #keljelwies .gt_title {
color: #333333; color: #333333;
font-size: 125%; font-size: 125%;
font-weight: initial; font-weight: initial;
@ -157,7 +157,7 @@ demonstration of the functions.</p>
border-bottom-width: 0; border-bottom-width: 0;
} }
#fctdbyyeeg .gt_subtitle { #keljelwies .gt_subtitle {
color: #333333; color: #333333;
font-size: 85%; font-size: 85%;
font-weight: initial; font-weight: initial;
@ -169,7 +169,7 @@ demonstration of the functions.</p>
border-top-width: 0; border-top-width: 0;
} }
#fctdbyyeeg .gt_heading { #keljelwies .gt_heading {
background-color: #FFFFFF; background-color: #FFFFFF;
text-align: center; text-align: center;
border-bottom-color: #FFFFFF; border-bottom-color: #FFFFFF;
@ -181,13 +181,13 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#fctdbyyeeg .gt_bottom_border { #keljelwies .gt_bottom_border {
border-bottom-style: solid; border-bottom-style: solid;
border-bottom-width: 2px; border-bottom-width: 2px;
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#fctdbyyeeg .gt_col_headings { #keljelwies .gt_col_headings {
border-top-style: solid; border-top-style: solid;
border-top-width: 2px; border-top-width: 2px;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
@ -202,7 +202,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#fctdbyyeeg .gt_col_heading { #keljelwies .gt_col_heading {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -222,7 +222,7 @@ demonstration of the functions.</p>
overflow-x: hidden; overflow-x: hidden;
} }
#fctdbyyeeg .gt_column_spanner_outer { #keljelwies .gt_column_spanner_outer {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -234,15 +234,15 @@ demonstration of the functions.</p>
padding-right: 4px; padding-right: 4px;
} }
#fctdbyyeeg .gt_column_spanner_outer:first-child { #keljelwies .gt_column_spanner_outer:first-child {
padding-left: 0; padding-left: 0;
} }
#fctdbyyeeg .gt_column_spanner_outer:last-child { #keljelwies .gt_column_spanner_outer:last-child {
padding-right: 0; padding-right: 0;
} }
#fctdbyyeeg .gt_column_spanner { #keljelwies .gt_column_spanner {
border-bottom-style: solid; border-bottom-style: solid;
border-bottom-width: 2px; border-bottom-width: 2px;
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
@ -254,11 +254,11 @@ demonstration of the functions.</p>
width: 100%; width: 100%;
} }
#fctdbyyeeg .gt_spanner_row { #keljelwies .gt_spanner_row {
border-bottom-style: hidden; border-bottom-style: hidden;
} }
#fctdbyyeeg .gt_group_heading { #keljelwies .gt_group_heading {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -284,7 +284,7 @@ demonstration of the functions.</p>
text-align: left; text-align: left;
} }
#fctdbyyeeg .gt_empty_group_heading { #keljelwies .gt_empty_group_heading {
padding: 0.5px; padding: 0.5px;
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
@ -299,15 +299,15 @@ demonstration of the functions.</p>
vertical-align: middle; vertical-align: middle;
} }
#fctdbyyeeg .gt_from_md > :first-child { #keljelwies .gt_from_md > :first-child {
margin-top: 0; margin-top: 0;
} }
#fctdbyyeeg .gt_from_md > :last-child { #keljelwies .gt_from_md > :last-child {
margin-bottom: 0; margin-bottom: 0;
} }
#fctdbyyeeg .gt_row { #keljelwies .gt_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -326,7 +326,7 @@ demonstration of the functions.</p>
overflow-x: hidden; overflow-x: hidden;
} }
#fctdbyyeeg .gt_stub { #keljelwies .gt_stub {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -339,7 +339,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#fctdbyyeeg .gt_stub_row_group { #keljelwies .gt_stub_row_group {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -353,15 +353,15 @@ demonstration of the functions.</p>
vertical-align: top; vertical-align: top;
} }
#fctdbyyeeg .gt_row_group_first td { #keljelwies .gt_row_group_first td {
border-top-width: 2px; border-top-width: 2px;
} }
#fctdbyyeeg .gt_row_group_first th { #keljelwies .gt_row_group_first th {
border-top-width: 2px; border-top-width: 2px;
} }
#fctdbyyeeg .gt_summary_row { #keljelwies .gt_summary_row {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
text-transform: inherit; text-transform: inherit;
@ -371,16 +371,16 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#fctdbyyeeg .gt_first_summary_row { #keljelwies .gt_first_summary_row {
border-top-style: solid; border-top-style: solid;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
} }
#fctdbyyeeg .gt_first_summary_row.thick { #keljelwies .gt_first_summary_row.thick {
border-top-width: 2px; border-top-width: 2px;
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#fctdbyyeeg .gt_last_summary_row { #keljelwies .gt_last_summary_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -390,7 +390,7 @@ demonstration of the functions.</p>
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#fctdbyyeeg .gt_grand_summary_row { #keljelwies .gt_grand_summary_row {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
text-transform: inherit; text-transform: inherit;
@ -400,7 +400,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#fctdbyyeeg .gt_first_grand_summary_row { #keljelwies .gt_first_grand_summary_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -410,7 +410,7 @@ demonstration of the functions.</p>
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
} }
#fctdbyyeeg .gt_last_grand_summary_row_top { #keljelwies .gt_last_grand_summary_row_top {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -420,11 +420,11 @@ demonstration of the functions.</p>
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#fctdbyyeeg .gt_striped { #keljelwies .gt_striped {
background-color: rgba(128, 128, 128, 0.05); background-color: rgba(128, 128, 128, 0.05);
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#fctdbyyeeg .gt_table_body { #keljelwies .gt_table_body {
border-top-style: solid; border-top-style: solid;
border-top-width: 2px; border-top-width: 2px;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
@ -433,7 +433,7 @@ demonstration of the functions.</p>
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#fctdbyyeeg .gt_footnotes { #keljelwies .gt_footnotes {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
border-bottom-style: none; border-bottom-style: none;
@ -447,7 +447,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
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margin: 0px; margin: 0px;
font-size: 90%; font-size: 90%;
padding-top: 4px; padding-top: 4px;
@ -456,7 +456,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#fctdbyyeeg .gt_sourcenotes { #keljelwies .gt_sourcenotes {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
border-bottom-style: none; border-bottom-style: none;
@ -470,7 +470,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#fctdbyyeeg .gt_sourcenote { #keljelwies .gt_sourcenote {
font-size: 90%; font-size: 90%;
padding-top: 4px; padding-top: 4px;
padding-bottom: 4px; padding-bottom: 4px;
@ -478,63 +478,63 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#fctdbyyeeg .gt_left { #keljelwies .gt_left {
text-align: left; text-align: left;
} }
#fctdbyyeeg .gt_center { #keljelwies .gt_center {
text-align: center; text-align: center;
} }
#fctdbyyeeg .gt_right { #keljelwies .gt_right {
text-align: right; text-align: right;
font-variant-numeric: tabular-nums; font-variant-numeric: tabular-nums;
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font-weight: normal; font-weight: normal;
} }
#fctdbyyeeg .gt_font_bold { #keljelwies .gt_font_bold {
font-weight: bold; font-weight: bold;
} }
#fctdbyyeeg .gt_font_italic { #keljelwies .gt_font_italic {
font-style: italic; font-style: italic;
} }
#fctdbyyeeg .gt_super { #keljelwies .gt_super {
font-size: 65%; font-size: 65%;
} }
#fctdbyyeeg .gt_footnote_marks { #keljelwies .gt_footnote_marks {
font-size: 75%; font-size: 75%;
vertical-align: 0.4em; vertical-align: 0.4em;
position: initial; position: initial;
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#fctdbyyeeg .gt_asterisk { #keljelwies .gt_asterisk {
font-size: 100%; font-size: 100%;
vertical-align: 0; vertical-align: 0;
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text-indent: 5px; text-indent: 5px;
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text-indent: 10px; text-indent: 10px;
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text-indent: 15px; text-indent: 15px;
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text-indent: 20px; text-indent: 20px;
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#fctdbyyeeg .gt_indent_5 { #keljelwies .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
</style> </style>
@ -1001,23 +1001,23 @@ demonstration of the functions.</p>
</div> </div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
<div id="lvorqpvplf" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;"> <div id="iwvngtnhrf" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>#lvorqpvplf table { <style>#iwvngtnhrf table {
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-moz-osx-font-smoothing: grayscale; -moz-osx-font-smoothing: grayscale;
} }
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border-style: none; border-style: none;
} }
#lvorqpvplf p { #iwvngtnhrf p {
margin: 0; margin: 0;
padding: 0; padding: 0;
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#lvorqpvplf .gt_table { #iwvngtnhrf .gt_table {
display: table; display: table;
border-collapse: collapse; border-collapse: collapse;
line-height: normal; line-height: normal;
@ -1043,12 +1043,12 @@ demonstration of the functions.</p>
border-left-color: #D3D3D3; border-left-color: #D3D3D3;
} }
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color: #333333; color: #333333;
font-size: 125%; font-size: 125%;
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@ -1060,7 +1060,7 @@ demonstration of the functions.</p>
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} }
#lvorqpvplf .gt_subtitle { #iwvngtnhrf .gt_subtitle {
color: #333333; color: #333333;
font-size: 85%; font-size: 85%;
font-weight: initial; font-weight: initial;
@ -1072,7 +1072,7 @@ demonstration of the functions.</p>
border-top-width: 0; border-top-width: 0;
} }
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background-color: #FFFFFF; background-color: #FFFFFF;
text-align: center; text-align: center;
border-bottom-color: #FFFFFF; border-bottom-color: #FFFFFF;
@ -1084,13 +1084,13 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
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border-bottom-style: solid; border-bottom-style: solid;
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border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
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@ -1105,7 +1105,7 @@ demonstration of the functions.</p>
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@ -1125,7 +1125,7 @@ demonstration of the functions.</p>
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color: #333333; color: #333333;
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@ -1137,15 +1137,15 @@ demonstration of the functions.</p>
padding-right: 4px; padding-right: 4px;
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padding-left: 0; padding-left: 0;
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border-bottom-style: solid; border-bottom-style: solid;
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@ -1157,11 +1157,11 @@ demonstration of the functions.</p>
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@ -1187,7 +1187,7 @@ demonstration of the functions.</p>
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padding: 0.5px; padding: 0.5px;
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@ -1202,15 +1202,15 @@ demonstration of the functions.</p>
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@ -1229,7 +1229,7 @@ demonstration of the functions.</p>
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@ -1242,7 +1242,7 @@ demonstration of the functions.</p>
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@ -1256,15 +1256,15 @@ demonstration of the functions.</p>
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@ -116,6 +116,7 @@
<li><p><code>REDcap_split()</code>: Works largely as the original <code>REDCapRITS::REDCap_split()</code>. It takes a REDCap dataset and metadata (data dictionary) to split the data set into a list of dataframes of instruments.</p></li> <li><p><code>REDcap_split()</code>: Works largely as the original <code>REDCapRITS::REDCap_split()</code>. It takes a REDCap dataset and metadata (data dictionary) to split the data set into a list of dataframes of instruments.</p></li>
<li><p><code><a href="reference/read_redcap_tables.html">read_redcap_tables()</a></code>: wraps the use of <a href="https://github.com/OuhscBbmc/REDCapR" class="external-link"><code>REDCapR::redcap_read()</code></a> with <code><a href="reference/REDCap_split.html">REDCap_split()</a></code> to ease the export of REDCap data.</p></li> <li><p><code><a href="reference/read_redcap_tables.html">read_redcap_tables()</a></code>: wraps the use of <a href="https://github.com/OuhscBbmc/REDCapR" class="external-link"><code>REDCapR::redcap_read()</code></a> with <code><a href="reference/REDCap_split.html">REDCap_split()</a></code> to ease the export of REDCap data.</p></li>
<li><p><code><a href="reference/redcap_wider.html">redcap_wider()</a></code>: pivots each data frame with repeated instruments to a wide format utilizing the <a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link"><code>tidyr::pivot_wider()</code></a> from the <a href="https://www.tidyverse.org/" class="external-link">tidyverse</a>.</p></li> <li><p><code><a href="reference/redcap_wider.html">redcap_wider()</a></code>: pivots each data frame with repeated instruments to a wide format utilizing the <a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link"><code>tidyr::pivot_wider()</code></a> from the <a href="https://www.tidyverse.org/" class="external-link">tidyverse</a>.</p></li>
<li><p><code><a href="reference/easy_redcap.html">easy_redcap()</a></code>: combines secure API key storage with the <code>keyring</code>-package, focused data retrieval and optional widening. This is the recommended approach for easy data access and analysis.</p></li>
</ul> </ul>
<p>Compared to the original <code>REDCapRITS</code>, all matching functions are improved to accept column naming of REDCap data from manual download or API export.</p> <p>Compared to the original <code>REDCapRITS</code>, all matching functions are improved to accept column naming of REDCap data from manual download or API export.</p>
</div> </div>

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@ -3,7 +3,7 @@ pkgdown: 2.0.7
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articles: articles:
Introduction: Introduction.html Introduction: Introduction.html
last_built: 2023-12-20T14:54Z last_built: 2023-12-20T15:02Z
urls: urls:
reference: https://agdamsbo.github.io/REDCapCAST/reference reference: https://agdamsbo.github.io/REDCapCAST/reference
article: https://agdamsbo.github.io/REDCapCAST/articles article: https://agdamsbo.github.io/REDCapCAST/articles

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