mirror of
https://github.com/agdamsbo/REDCapCAST.git
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parent
d15c2d35ad
commit
cb253af3ba
@ -14,7 +14,8 @@ Suggests:
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httr,
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httr,
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jsonlite,
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jsonlite,
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testthat,
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testthat,
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Hmisc
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Hmisc,
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readr
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License: GPL-3
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License: GPL-3
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Encoding: UTF-8
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Encoding: UTF-8
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LazyData: true
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LazyData: true
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@ -89,6 +89,10 @@ REDCap_split <- function(records,
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records <- process_user_input(records)
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records <- process_user_input(records)
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metadata <- process_user_input(metadata)
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metadata <- process_user_input(metadata)
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# Remove "tbl_df" class from metadata, if present, due to difference in
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# `[.tbl_df` behavior as compared to `[.data.frame` behavior (see issue #12)
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if(inherits(metadata, "tbl_df")) class(metadata) <- "data.frame"
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# Get the variable names in the dataset
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# Get the variable names in the dataset
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vars_in_data <- names(records)
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vars_in_data <- names(records)
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@ -100,6 +104,15 @@ REDCap_split <- function(records,
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stop("There are no repeating instruments in this dataset.")
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stop("There are no repeating instruments in this dataset.")
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}
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}
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# Remove NAs from `redcap_repeat_instrument` (see issue #12)
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if(any(is.na(records$redcap_repeat_instrument))) {
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records$redcap_repeat_instrument <- ifelse(
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is.na(records$redcap_repeat_instrument),
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"",
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as.character(records$redcap_repeat_instrument)
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)
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}
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# Standardize variable names for metadata
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# Standardize variable names for metadata
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names(metadata) <- metadata_names
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names(metadata) <- metadata_names
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22
R/tests/testthat/test-readr.R
Normal file
22
R/tests/testthat/test-readr.R
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@ -0,0 +1,22 @@
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if (requireNamespace("readr", quietly = TRUE)) {
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context("Compatibility with readr")
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metadata <- readr::read_csv(
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get_data_location(
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"ExampleProject_DataDictionary_2018-06-07.csv"
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)
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)
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records <- readr::read_csv(
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get_data_location(
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"ExampleProject_DATA_2018-06-07_1129.csv"
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)
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)
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test_that("Data read in with `readr` will return correct result", {
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redcap_output_readr <- REDCap_split(records, metadata)
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expect_known_hash(redcap_output_readr, "bde303d330fba161ca500c10cfabb693")
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})
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}
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