From c142a2b4abb45a09b662ccd04a64f8551286ab42 Mon Sep 17 00:00:00 2001
From: agdamsbo <43278243+agdamsbo@users.noreply.github.com>
Date: Tue, 9 Jan 2024 09:43:27 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20agdamsbo?=
 =?UTF-8?q?/REDCapCAST@5eaa46a0f61f0d59e1bc7d05a60738995f3e6942=20?=
 =?UTF-8?q?=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 404.html                                 |   2 +-
 LICENSE.html                             |   2 +-
 articles/Introduction.html               | 214 +++++++++++------------
 articles/index.html                      |   2 +-
 authors.html                             |   6 +-
 index.html                               |   2 +-
 news/index.html                          |   2 +-
 pkgdown.yml                              |   2 +-
 reference/REDCap_split.html              |   2 +-
 reference/clean_redcap_name.html         |   2 +-
 reference/d2w.html                       |   2 +-
 reference/ds2dd.html                     |   2 +-
 reference/easy_redcap.html               |   2 +-
 reference/focused_metadata.html          |   2 +-
 reference/get_api_key.html               |   2 +-
 reference/index.html                     |   2 +-
 reference/match_fields_to_form.html      |   2 +-
 reference/read_redcap_tables.html        |   2 +-
 reference/redcap_wider.html              |   2 +-
 reference/redcapcast_data.html           |   2 +-
 reference/redcapcast_meta.html           |   2 +-
 reference/sanitize_split.html            |   2 +-
 reference/split_non_repeating_forms.html |   2 +-
 reference/strsplitx.html                 |   2 +-
 search.json                              |   2 +-
 25 files changed, 133 insertions(+), 133 deletions(-)

diff --git a/404.html b/404.html
index 68d4759..eafca54 100644
--- a/404.html
+++ b/404.html
@@ -31,7 +31,7 @@
     
     <a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/LICENSE.html b/LICENSE.html
index 581563c..b35405f 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/articles/Introduction.html b/articles/Introduction.html
index 1685c6f..77d1e2f 100644
--- a/articles/Introduction.html
+++ b/articles/Introduction.html
@@ -33,7 +33,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -98,23 +98,23 @@ demonstration of the functions.</p>
 </h2>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
-<div id="tpfauhgfiu" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
-<style>#tpfauhgfiu table {
+<div id="itsnstsaqt" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<style>#itsnstsaqt table {
   font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';
   -webkit-font-smoothing: antialiased;
   -moz-osx-font-smoothing: grayscale;
 }
 
-#tpfauhgfiu thead, #tpfauhgfiu tbody, #tpfauhgfiu tfoot, #tpfauhgfiu tr, #tpfauhgfiu td, #tpfauhgfiu th {
+#itsnstsaqt thead, #itsnstsaqt tbody, #itsnstsaqt tfoot, #itsnstsaqt tr, #itsnstsaqt td, #itsnstsaqt th {
   border-style: none;
 }
 
-#tpfauhgfiu p {
+#itsnstsaqt p {
   margin: 0;
   padding: 0;
 }
 
-#tpfauhgfiu .gt_table {
+#itsnstsaqt .gt_table {
   display: table;
   border-collapse: collapse;
   line-height: normal;
@@ -140,12 +140,12 @@ demonstration of the functions.</p>
   border-left-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_caption {
+#itsnstsaqt .gt_caption {
   padding-top: 4px;
   padding-bottom: 4px;
 }
 
-#tpfauhgfiu .gt_title {
+#itsnstsaqt .gt_title {
   color: #333333;
   font-size: 125%;
   font-weight: initial;
@@ -157,7 +157,7 @@ demonstration of the functions.</p>
   border-bottom-width: 0;
 }
 
-#tpfauhgfiu .gt_subtitle {
+#itsnstsaqt .gt_subtitle {
   color: #333333;
   font-size: 85%;
   font-weight: initial;
@@ -169,7 +169,7 @@ demonstration of the functions.</p>
   border-top-width: 0;
 }
 
-#tpfauhgfiu .gt_heading {
+#itsnstsaqt .gt_heading {
   background-color: #FFFFFF;
   text-align: center;
   border-bottom-color: #FFFFFF;
@@ -181,13 +181,13 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_bottom_border {
+#itsnstsaqt .gt_bottom_border {
   border-bottom-style: solid;
   border-bottom-width: 2px;
   border-bottom-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_col_headings {
+#itsnstsaqt .gt_col_headings {
   border-top-style: solid;
   border-top-width: 2px;
   border-top-color: #D3D3D3;
@@ -202,7 +202,7 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_col_heading {
+#itsnstsaqt .gt_col_heading {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -222,7 +222,7 @@ demonstration of the functions.</p>
   overflow-x: hidden;
 }
 
-#tpfauhgfiu .gt_column_spanner_outer {
+#itsnstsaqt .gt_column_spanner_outer {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -234,15 +234,15 @@ demonstration of the functions.</p>
   padding-right: 4px;
 }
 
-#tpfauhgfiu .gt_column_spanner_outer:first-child {
+#itsnstsaqt .gt_column_spanner_outer:first-child {
   padding-left: 0;
 }
 
-#tpfauhgfiu .gt_column_spanner_outer:last-child {
+#itsnstsaqt .gt_column_spanner_outer:last-child {
   padding-right: 0;
 }
 
-#tpfauhgfiu .gt_column_spanner {
+#itsnstsaqt .gt_column_spanner {
   border-bottom-style: solid;
   border-bottom-width: 2px;
   border-bottom-color: #D3D3D3;
@@ -254,11 +254,11 @@ demonstration of the functions.</p>
   width: 100%;
 }
 
-#tpfauhgfiu .gt_spanner_row {
+#itsnstsaqt .gt_spanner_row {
   border-bottom-style: hidden;
 }
 
-#tpfauhgfiu .gt_group_heading {
+#itsnstsaqt .gt_group_heading {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -284,7 +284,7 @@ demonstration of the functions.</p>
   text-align: left;
 }
 
-#tpfauhgfiu .gt_empty_group_heading {
+#itsnstsaqt .gt_empty_group_heading {
   padding: 0.5px;
   color: #333333;
   background-color: #FFFFFF;
@@ -299,15 +299,15 @@ demonstration of the functions.</p>
   vertical-align: middle;
 }
 
-#tpfauhgfiu .gt_from_md > :first-child {
+#itsnstsaqt .gt_from_md > :first-child {
   margin-top: 0;
 }
 
-#tpfauhgfiu .gt_from_md > :last-child {
+#itsnstsaqt .gt_from_md > :last-child {
   margin-bottom: 0;
 }
 
-#tpfauhgfiu .gt_row {
+#itsnstsaqt .gt_row {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -326,7 +326,7 @@ demonstration of the functions.</p>
   overflow-x: hidden;
 }
 
-#tpfauhgfiu .gt_stub {
+#itsnstsaqt .gt_stub {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -339,7 +339,7 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#tpfauhgfiu .gt_stub_row_group {
+#itsnstsaqt .gt_stub_row_group {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -353,15 +353,15 @@ demonstration of the functions.</p>
   vertical-align: top;
 }
 
-#tpfauhgfiu .gt_row_group_first td {
+#itsnstsaqt .gt_row_group_first td {
   border-top-width: 2px;
 }
 
-#tpfauhgfiu .gt_row_group_first th {
+#itsnstsaqt .gt_row_group_first th {
   border-top-width: 2px;
 }
 
-#tpfauhgfiu .gt_summary_row {
+#itsnstsaqt .gt_summary_row {
   color: #333333;
   background-color: #FFFFFF;
   text-transform: inherit;
@@ -371,16 +371,16 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#tpfauhgfiu .gt_first_summary_row {
+#itsnstsaqt .gt_first_summary_row {
   border-top-style: solid;
   border-top-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_first_summary_row.thick {
+#itsnstsaqt .gt_first_summary_row.thick {
   border-top-width: 2px;
 }
 
-#tpfauhgfiu .gt_last_summary_row {
+#itsnstsaqt .gt_last_summary_row {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -390,7 +390,7 @@ demonstration of the functions.</p>
   border-bottom-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_grand_summary_row {
+#itsnstsaqt .gt_grand_summary_row {
   color: #333333;
   background-color: #FFFFFF;
   text-transform: inherit;
@@ -400,7 +400,7 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#tpfauhgfiu .gt_first_grand_summary_row {
+#itsnstsaqt .gt_first_grand_summary_row {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -410,7 +410,7 @@ demonstration of the functions.</p>
   border-top-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_last_grand_summary_row_top {
+#itsnstsaqt .gt_last_grand_summary_row_top {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -420,11 +420,11 @@ demonstration of the functions.</p>
   border-bottom-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_striped {
+#itsnstsaqt .gt_striped {
   background-color: rgba(128, 128, 128, 0.05);
 }
 
-#tpfauhgfiu .gt_table_body {
+#itsnstsaqt .gt_table_body {
   border-top-style: solid;
   border-top-width: 2px;
   border-top-color: #D3D3D3;
@@ -433,7 +433,7 @@ demonstration of the functions.</p>
   border-bottom-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_footnotes {
+#itsnstsaqt .gt_footnotes {
   color: #333333;
   background-color: #FFFFFF;
   border-bottom-style: none;
@@ -447,7 +447,7 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_footnote {
+#itsnstsaqt .gt_footnote {
   margin: 0px;
   font-size: 90%;
   padding-top: 4px;
@@ -456,7 +456,7 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#tpfauhgfiu .gt_sourcenotes {
+#itsnstsaqt .gt_sourcenotes {
   color: #333333;
   background-color: #FFFFFF;
   border-bottom-style: none;
@@ -470,7 +470,7 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#tpfauhgfiu .gt_sourcenote {
+#itsnstsaqt .gt_sourcenote {
   font-size: 90%;
   padding-top: 4px;
   padding-bottom: 4px;
@@ -478,63 +478,63 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#tpfauhgfiu .gt_left {
+#itsnstsaqt .gt_left {
   text-align: left;
 }
 
-#tpfauhgfiu .gt_center {
+#itsnstsaqt .gt_center {
   text-align: center;
 }
 
-#tpfauhgfiu .gt_right {
+#itsnstsaqt .gt_right {
   text-align: right;
   font-variant-numeric: tabular-nums;
 }
 
-#tpfauhgfiu .gt_font_normal {
+#itsnstsaqt .gt_font_normal {
   font-weight: normal;
 }
 
-#tpfauhgfiu .gt_font_bold {
+#itsnstsaqt .gt_font_bold {
   font-weight: bold;
 }
 
-#tpfauhgfiu .gt_font_italic {
+#itsnstsaqt .gt_font_italic {
   font-style: italic;
 }
 
-#tpfauhgfiu .gt_super {
+#itsnstsaqt .gt_super {
   font-size: 65%;
 }
 
-#tpfauhgfiu .gt_footnote_marks {
+#itsnstsaqt .gt_footnote_marks {
   font-size: 75%;
   vertical-align: 0.4em;
   position: initial;
 }
 
-#tpfauhgfiu .gt_asterisk {
+#itsnstsaqt .gt_asterisk {
   font-size: 100%;
   vertical-align: 0;
 }
 
-#tpfauhgfiu .gt_indent_1 {
+#itsnstsaqt .gt_indent_1 {
   text-indent: 5px;
 }
 
-#tpfauhgfiu .gt_indent_2 {
+#itsnstsaqt .gt_indent_2 {
   text-indent: 10px;
 }
 
-#tpfauhgfiu .gt_indent_3 {
+#itsnstsaqt .gt_indent_3 {
   text-indent: 15px;
 }
 
-#tpfauhgfiu .gt_indent_4 {
+#itsnstsaqt .gt_indent_4 {
   text-indent: 20px;
 }
 
-#tpfauhgfiu .gt_indent_5 {
+#itsnstsaqt .gt_indent_5 {
   text-indent: 25px;
 }
 </style>
@@ -1001,23 +1001,23 @@ demonstration of the functions.</p>
 </div>
 <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
-<div id="htvfenxain" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
-<style>#htvfenxain table {
+<div id="ikrmebduof" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
+<style>#ikrmebduof table {
   font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';
   -webkit-font-smoothing: antialiased;
   -moz-osx-font-smoothing: grayscale;
 }
 
-#htvfenxain thead, #htvfenxain tbody, #htvfenxain tfoot, #htvfenxain tr, #htvfenxain td, #htvfenxain th {
+#ikrmebduof thead, #ikrmebduof tbody, #ikrmebduof tfoot, #ikrmebduof tr, #ikrmebduof td, #ikrmebduof th {
   border-style: none;
 }
 
-#htvfenxain p {
+#ikrmebduof p {
   margin: 0;
   padding: 0;
 }
 
-#htvfenxain .gt_table {
+#ikrmebduof .gt_table {
   display: table;
   border-collapse: collapse;
   line-height: normal;
@@ -1043,12 +1043,12 @@ demonstration of the functions.</p>
   border-left-color: #D3D3D3;
 }
 
-#htvfenxain .gt_caption {
+#ikrmebduof .gt_caption {
   padding-top: 4px;
   padding-bottom: 4px;
 }
 
-#htvfenxain .gt_title {
+#ikrmebduof .gt_title {
   color: #333333;
   font-size: 125%;
   font-weight: initial;
@@ -1060,7 +1060,7 @@ demonstration of the functions.</p>
   border-bottom-width: 0;
 }
 
-#htvfenxain .gt_subtitle {
+#ikrmebduof .gt_subtitle {
   color: #333333;
   font-size: 85%;
   font-weight: initial;
@@ -1072,7 +1072,7 @@ demonstration of the functions.</p>
   border-top-width: 0;
 }
 
-#htvfenxain .gt_heading {
+#ikrmebduof .gt_heading {
   background-color: #FFFFFF;
   text-align: center;
   border-bottom-color: #FFFFFF;
@@ -1084,13 +1084,13 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#htvfenxain .gt_bottom_border {
+#ikrmebduof .gt_bottom_border {
   border-bottom-style: solid;
   border-bottom-width: 2px;
   border-bottom-color: #D3D3D3;
 }
 
-#htvfenxain .gt_col_headings {
+#ikrmebduof .gt_col_headings {
   border-top-style: solid;
   border-top-width: 2px;
   border-top-color: #D3D3D3;
@@ -1105,7 +1105,7 @@ demonstration of the functions.</p>
   border-right-color: #D3D3D3;
 }
 
-#htvfenxain .gt_col_heading {
+#ikrmebduof .gt_col_heading {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -1125,7 +1125,7 @@ demonstration of the functions.</p>
   overflow-x: hidden;
 }
 
-#htvfenxain .gt_column_spanner_outer {
+#ikrmebduof .gt_column_spanner_outer {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -1137,15 +1137,15 @@ demonstration of the functions.</p>
   padding-right: 4px;
 }
 
-#htvfenxain .gt_column_spanner_outer:first-child {
+#ikrmebduof .gt_column_spanner_outer:first-child {
   padding-left: 0;
 }
 
-#htvfenxain .gt_column_spanner_outer:last-child {
+#ikrmebduof .gt_column_spanner_outer:last-child {
   padding-right: 0;
 }
 
-#htvfenxain .gt_column_spanner {
+#ikrmebduof .gt_column_spanner {
   border-bottom-style: solid;
   border-bottom-width: 2px;
   border-bottom-color: #D3D3D3;
@@ -1157,11 +1157,11 @@ demonstration of the functions.</p>
   width: 100%;
 }
 
-#htvfenxain .gt_spanner_row {
+#ikrmebduof .gt_spanner_row {
   border-bottom-style: hidden;
 }
 
-#htvfenxain .gt_group_heading {
+#ikrmebduof .gt_group_heading {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -1187,7 +1187,7 @@ demonstration of the functions.</p>
   text-align: left;
 }
 
-#htvfenxain .gt_empty_group_heading {
+#ikrmebduof .gt_empty_group_heading {
   padding: 0.5px;
   color: #333333;
   background-color: #FFFFFF;
@@ -1202,15 +1202,15 @@ demonstration of the functions.</p>
   vertical-align: middle;
 }
 
-#htvfenxain .gt_from_md > :first-child {
+#ikrmebduof .gt_from_md > :first-child {
   margin-top: 0;
 }
 
-#htvfenxain .gt_from_md > :last-child {
+#ikrmebduof .gt_from_md > :last-child {
   margin-bottom: 0;
 }
 
-#htvfenxain .gt_row {
+#ikrmebduof .gt_row {
   padding-top: 8px;
   padding-bottom: 8px;
   padding-left: 5px;
@@ -1229,7 +1229,7 @@ demonstration of the functions.</p>
   overflow-x: hidden;
 }
 
-#htvfenxain .gt_stub {
+#ikrmebduof .gt_stub {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -1242,7 +1242,7 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#htvfenxain .gt_stub_row_group {
+#ikrmebduof .gt_stub_row_group {
   color: #333333;
   background-color: #FFFFFF;
   font-size: 100%;
@@ -1256,15 +1256,15 @@ demonstration of the functions.</p>
   vertical-align: top;
 }
 
-#htvfenxain .gt_row_group_first td {
+#ikrmebduof .gt_row_group_first td {
   border-top-width: 2px;
 }
 
-#htvfenxain .gt_row_group_first th {
+#ikrmebduof .gt_row_group_first th {
   border-top-width: 2px;
 }
 
-#htvfenxain .gt_summary_row {
+#ikrmebduof .gt_summary_row {
   color: #333333;
   background-color: #FFFFFF;
   text-transform: inherit;
@@ -1274,16 +1274,16 @@ demonstration of the functions.</p>
   padding-right: 5px;
 }
 
-#htvfenxain .gt_first_summary_row {
+#ikrmebduof .gt_first_summary_row {
   border-top-style: solid;
   border-top-color: #D3D3D3;
 }
 
-#htvfenxain .gt_first_summary_row.thick {
+#ikrmebduof .gt_first_summary_row.thick {
   border-top-width: 2px;
 }
 
-#htvfenxain .gt_last_summary_row {
+#ikrmebduof .gt_last_summary_row {
   padding-top: 8px;
   padding-bottom: 8px;
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@@ -1293,7 +1293,7 @@ demonstration of the functions.</p>
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+#ikrmebduof .gt_grand_summary_row {
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@@ -1303,7 +1303,7 @@ demonstration of the functions.</p>
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+#ikrmebduof .gt_first_grand_summary_row {
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@@ -1313,7 +1313,7 @@ demonstration of the functions.</p>
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 }
 
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+#ikrmebduof .gt_last_grand_summary_row_top {
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@@ -1323,11 +1323,11 @@ demonstration of the functions.</p>
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 }
 
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+#ikrmebduof .gt_striped {
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@@ -1336,7 +1336,7 @@ demonstration of the functions.</p>
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+#ikrmebduof .gt_footnotes {
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@@ -1350,7 +1350,7 @@ demonstration of the functions.</p>
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 }
 
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+#ikrmebduof .gt_footnote {
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@@ -1359,7 +1359,7 @@ demonstration of the functions.</p>
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+#ikrmebduof .gt_sourcenotes {
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@@ -1373,7 +1373,7 @@ demonstration of the functions.</p>
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 }
 
-#htvfenxain .gt_sourcenote {
+#ikrmebduof .gt_sourcenote {
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   padding-bottom: 4px;
@@ -1381,63 +1381,63 @@ demonstration of the functions.</p>
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 }
 
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+#ikrmebduof .gt_left {
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diff --git a/articles/index.html b/articles/index.html
index bc74e84..c78798b 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/authors.html b/authors.html
index 61ff6c9..9816d28 100644
--- a/authors.html
+++ b/authors.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -68,13 +68,13 @@
 
       <p>Damsbo A, Egeler P (2024).
 <em>REDCapCAST: REDCap Castellated Data Handling</em>.
-R package version 23.12.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>. 
+R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>. 
 </p>
       <pre>@Manual{,
   title = {REDCapCAST: REDCap Castellated Data Handling},
   author = {Andreas Gammelgaard Damsbo and Paul Egeler},
   year = {2024},
-  note = {R package version 23.12.1, https://agdamsbo.github.io/REDCapCAST/},
+  note = {R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/},
   url = {https://github.com/agdamsbo/REDCapCAST},
 }</pre>
     </div>
diff --git a/index.html b/index.html
index e5ba5c9..b332018 100644
--- a/index.html
+++ b/index.html
@@ -59,7 +59,7 @@
     
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/news/index.html b/news/index.html
index a4a0a3b..3b4c638 100644
--- a/news/index.html
+++ b/news/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/pkgdown.yml b/pkgdown.yml
index 9f6ed37..e152aa7 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   Introduction: Introduction.html
-last_built: 2024-01-09T09:37Z
+last_built: 2024-01-09T09:43Z
 urls:
   reference: https://agdamsbo.github.io/REDCapCAST/reference
   article: https://agdamsbo.github.io/REDCapCAST/articles
diff --git a/reference/REDCap_split.html b/reference/REDCap_split.html
index 7d04a5c..7e40536 100644
--- a/reference/REDCap_split.html
+++ b/reference/REDCap_split.html
@@ -14,7 +14,7 @@ is used to determine which fields should be included in each resultant table."><
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/clean_redcap_name.html b/reference/clean_redcap_name.html
index b5fdde3..e74605d 100644
--- a/reference/clean_redcap_name.html
+++ b/reference/clean_redcap_name.html
@@ -14,7 +14,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/d2w.html b/reference/d2w.html
index 3fd2b94..db2b91b 100644
--- a/reference/d2w.html
+++ b/reference/d2w.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/ds2dd.html b/reference/ds2dd.html
index 649f996..d167e13 100644
--- a/reference/ds2dd.html
+++ b/reference/ds2dd.html
@@ -12,7 +12,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/easy_redcap.html b/reference/easy_redcap.html
index 2a0d38d..5c520e2 100644
--- a/reference/easy_redcap.html
+++ b/reference/easy_redcap.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/focused_metadata.html b/reference/focused_metadata.html
index e446427..126c170 100644
--- a/reference/focused_metadata.html
+++ b/reference/focused_metadata.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/get_api_key.html b/reference/get_api_key.html
index b7751a9..57d25cd 100644
--- a/reference/get_api_key.html
+++ b/reference/get_api_key.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/index.html b/reference/index.html
index fe20327..5fb1f02 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/match_fields_to_form.html b/reference/match_fields_to_form.html
index 4a2429e..bff94c7 100644
--- a/reference/match_fields_to_form.html
+++ b/reference/match_fields_to_form.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/read_redcap_tables.html b/reference/read_redcap_tables.html
index 141f151..682e5c9 100644
--- a/reference/read_redcap_tables.html
+++ b/reference/read_redcap_tables.html
@@ -18,7 +18,7 @@ instruments."><meta property="og:image" content="https://agdamsbo.github.io/REDC
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/redcap_wider.html b/reference/redcap_wider.html
index a6bcc9b..6b8f925 100644
--- a/reference/redcap_wider.html
+++ b/reference/redcap_wider.html
@@ -12,7 +12,7 @@ Handles longitudinal projects, but not yet repeated instruments."><meta property
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/redcapcast_data.html b/reference/redcapcast_data.html
index 06e4f96..69da605 100644
--- a/reference/redcapcast_data.html
+++ b/reference/redcapcast_data.html
@@ -12,7 +12,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/redcapcast_meta.html b/reference/redcapcast_meta.html
index 36dd97c..3b8b8bb 100644
--- a/reference/redcapcast_meta.html
+++ b/reference/redcapcast_meta.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/sanitize_split.html b/reference/sanitize_split.html
index 6d55810..457fe03 100644
--- a/reference/sanitize_split.html
+++ b/reference/sanitize_split.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/split_non_repeating_forms.html b/reference/split_non_repeating_forms.html
index a9335d8..c9e2a9c 100644
--- a/reference/split_non_repeating_forms.html
+++ b/reference/split_non_repeating_forms.html
@@ -10,7 +10,7 @@
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/reference/strsplitx.html b/reference/strsplitx.html
index 7326bfd..77b1a9f 100644
--- a/reference/strsplitx.html
+++ b/reference/strsplitx.html
@@ -12,7 +12,7 @@ easing the split around the defined delimiter, see example."><meta property="og:
     
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">23.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.1.1</small>
 
     
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
diff --git a/search.json b/search.json
index b241d8f..f1af72c 100644
--- a/search.json
+++ b/search.json
@@ -1 +1 @@
-[{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. 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States allow patents restrict development use software general-purpose computers, , wish avoid special danger patents applied free program make effectively proprietary. prevent , GPL assures patents used render program non-free. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions","title":"GNU General Public License","text":"“License” refers version 3 GNU General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. 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If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"splitting-the-dataset","dir":"Articles","previous_headings":"","what":"Splitting the dataset","title":"Introduction","text":"","code":"redcapcast_data |> gt::gt() redcapcast_meta |> gt::gt() list <-   REDCap_split(records = redcapcast_data,                            metadata = redcapcast_meta,                            forms = \"repeating\") str(list) #> List of 2 #>  $          :'data.frame':   9 obs. of  17 variables: #>   ..$ record_id                   : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name           : chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:9] \"1203401OB4\" \"0102342303\" NA \"2301569823\" ... #>   ..$ inclusion                   : Date[1:9], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ dob                         : Date[1:9], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:9] 83 89.1 NA 66.1 NA ... #>   ..$ age_integer                 : num [1:9] 83 89 NA 66 NA NA 117 NA 126 #>   ..$ sex                         : chr [1:9] \"female\" \"male\" NA \"male\" ... #>   ..$ cohabitation                : chr [1:9] \"Yes\" \"Yes\" NA \"No\" ... #>   ..$ hypertension                : chr [1:9] \"No\" \"No\" NA \"Yes\" ... #>   ..$ diabetes                    : chr [1:9] \"Yes\" \"No\" NA \"Yes\" ... #>   ..$ region                      : chr [1:9] \"East\" \"South\" NA \"North\" ... #>   ..$ baseline_data_start_complete: chr [1:9] \"Incomplete\" \"Incomplete\" NA \"Incomplete\" ... #>   ..$ mrs_assessed                : chr [1:9] \"Yes\" \"Yes\" \"Yes\" NA ... #>   ..$ mrs_date                    : Date[1:9], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score                   : num [1:9] 1 1 3 NA 2 1 NA NA NA #>   ..$ mrs_complete                : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event:'data.frame':   9 obs. of  7 variables: #>   ..$ record_id               : num [1:9] 2 3 3 3 3 3 4 4 4 #>   ..$ redcap_event_name       : chr [1:9] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:9] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:9] 1 1 2 1 2 3 1 2 3 #>   ..$ event_date              : Date[1:9], format: \"2023-03-13\" \"2022-11-08\" ... #>   ..$ event_type              : chr [1:9] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   ..$ new_event_complete      : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... list <-   REDCap_split(records = redcapcast_data,                            metadata = redcapcast_meta,                            forms = \"all\") str(list) #> List of 3 #>  $ baseline_data_start:'data.frame': 9 obs. of  13 variables: #>   ..$ record_id                   : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name           : chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:9] \"1203401OB4\" \"0102342303\" NA \"2301569823\" ... #>   ..$ inclusion                   : Date[1:9], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ dob                         : Date[1:9], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:9] 83 89.1 NA 66.1 NA ... #>   ..$ age_integer                 : num [1:9] 83 89 NA 66 NA NA 117 NA 126 #>   ..$ sex                         : chr [1:9] \"female\" \"male\" NA \"male\" ... #>   ..$ cohabitation                : chr [1:9] \"Yes\" \"Yes\" NA \"No\" ... #>   ..$ hypertension                : chr [1:9] \"No\" \"No\" NA \"Yes\" ... #>   ..$ diabetes                    : chr [1:9] \"Yes\" \"No\" NA \"Yes\" ... #>   ..$ region                      : chr [1:9] \"East\" \"South\" NA \"North\" ... #>   ..$ baseline_data_start_complete: chr [1:9] \"Incomplete\" \"Incomplete\" NA \"Incomplete\" ... #>  $ mrs                :'data.frame': 9 obs. of  6 variables: #>   ..$ record_id        : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name: chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ mrs_assessed     : chr [1:9] \"Yes\" \"Yes\" \"Yes\" NA ... #>   ..$ mrs_date         : Date[1:9], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score        : num [1:9] 1 1 3 NA 2 1 NA NA NA #>   ..$ mrs_complete     : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event          :'data.frame': 9 obs. of  7 variables: #>   ..$ record_id               : num [1:9] 2 3 3 3 3 3 4 4 4 #>   ..$ redcap_event_name       : chr [1:9] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:9] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:9] 1 1 2 1 2 3 1 2 3 #>   ..$ event_date              : Date[1:9], format: \"2023-03-13\" \"2022-11-08\" ... #>   ..$ event_type              : chr [1:9] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   ..$ new_event_complete      : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ..."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"reading-data-from-redcap","dir":"Articles","previous_headings":"","what":"Reading data from REDCap","title":"Introduction","text":"function wraps demonstrated function get dataset, metadata, apply REDCap_splitfunction bit cleaning. just cuts outs steps easier approach. function works similar REDCapR::redcap_read() allowing specify fields, events forms export instead exporting whole database filtering afterwards. believe better safer, focused approach.","code":"# read_redcap_tables(uri = \"YOUR URI\", token = \"YOUR TOKEN\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"pivotting-to-wider-format","dir":"Articles","previous_headings":"","what":"Pivotting to wider format","title":"Introduction","text":"","code":"# redcap_wider(ds)"},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Paul Egeler. Author.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo , Egeler P (2024). REDCapCAST: REDCap Castellated Data Handling. R package version 23.12.1, https://agdamsbo.github.io/REDCapCAST/, https://github.com/agdamsbo/REDCapCAST.","code":"@Manual{,   title = {REDCapCAST: REDCap Castellated Data Handling},   author = {Andreas Gammelgaard Damsbo and Paul Egeler},   year = {2024},   note = {R package version 23.12.1, https://agdamsbo.github.io/REDCapCAST/},   url = {https://github.com/agdamsbo/REDCapCAST}, }"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"redcapcast-package-","dir":"","previous_headings":"","what":"REDCap Castellated Data Handling","title":"REDCap Castellated Data Handling","text":"REDCap Castellated data handling using repeated instruments. package fork pegeler/REDCapRITS. REDCapRITS represents great extensive work handle castellated REDCap data different programming languages. fork purely minded R usage includes implementations main REDCap_split function. main goal project allow “minimal data” approach allowing filter records, instruments variables export download data needed. think approach desireable handling sensitive, clinical data. similar functionality available similar tools (like REDCapR REDCapTidieR). Please refer REDCap-Tools great tools.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"use-and-immprovements","dir":"","previous_headings":"","what":"Use and immprovements","title":"REDCap Castellated Data Handling","text":"package primarily relevant working longitudinal projects /projects using repeated instruments. just short descirption main functions: REDcap_split(): Works largely original REDCapRITS::REDCap_split(). takes REDCap dataset metadata (data dictionary) split data set list dataframes instruments. read_redcap_tables(): wraps use REDCapR::redcap_read() REDCap_split() ease export REDCap data. redcap_wider(): pivots data frame repeated instruments wide format utilizing tidyr::pivot_wider() tidyverse. easy_redcap(): combines secure API key storage keyring-package, focused data retrieval optional widening. recommended approach easy data access analysis. Compared original REDCapRITS, matching functions improved accept column naming REDCap data manual download API export.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"future","dir":"","previous_headings":"","what":"Future","title":"REDCap Castellated Data Handling","text":"plan package bundled Handbook working REDCap R. plan also include functionality assist casting (yes, pun intended) initial REDCap database.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"REDCap Castellated Data Handling","text":"package available CRAN. Install latest version: Install latest version directly GitHub:","code":"install.packages(\"REDCapCAST\") remotes::install_github(\"agdamsbo/REDCapCAST\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Split REDCap repeating instruments table into multiple tables — REDCap_split","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"take output REDCap export split base table child tables repeating instrument. Metadata used determine fields included resultant table.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"REDCap_split(   records,   metadata,   primary_table_name = \"\",   forms = c(\"repeating\", \"all\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"records Exported project records. May data.frame, response, character vector containing JSON API call. metadata Project metadata (data dictionary). May data.frame, response, character vector containing JSON API call. primary_table_name Name given list element primary output table (described README.md). Ignored forms = ''. forms Indicate whether create separate tables repeating instruments forms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"list \"data.frame\"s. number tables differ   depending forms option selected.  'repeating': one base table one     tables repeating instrument. '': data.frame instrument, regardless     whether repeating instrument .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"Paul W. Egeler, M.S., GStat","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"if (FALSE) { # Using an API call -------------------------------------------------------  library(RCurl)  # Get the records records <- postForm(   uri = api_url,     # Supply your site-specific URI   token = api_token, # Supply your own API token   content = 'record',   format = 'json',   returnFormat = 'json' )  # Get the metadata metadata <- postForm(   uri = api_url,     # Supply your site-specific URI   token = api_token, # Supply your own API token   content = 'metadata',   format = 'json' )  # Convert exported JSON strings into a list of data.frames REDCapRITS::REDCap_split(records, metadata)  # Using a raw data export -------------------------------------------------  # Get the records records <- read.csv(\"/path/to/data/ExampleProject_DATA_2018-06-03_1700.csv\")  # Get the metadata metadata <- read.csv( \"/path/to/data/ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapRITS::REDCap_split(records, metadata)  # In conjunction with the R export script ---------------------------------  # You must set the working directory first since the REDCap data export # script contains relative file references. old <- getwd() setwd(\"/path/to/data/\")  # Run the data export script supplied by REDCap. # This will create a data.frame of your records called 'data' source(\"ExampleProject_R_2018-06-03_1700.r\")  # Get the metadatan metadata <- read.csv(\"ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapRITS::REDCap_split(data, metadata) setwd(old) }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":null,"dir":"Reference","previous_headings":"","what":"clean_redcap_name — clean_redcap_name","title":"clean_redcap_name — clean_redcap_name","text":"Stepwise removal non-alphanumeric characters, trailing white space, substitutes spaces underscores converts lower case. Trying make different naming conventions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"clean_redcap_name — clean_redcap_name","text":"","code":"clean_redcap_name(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"clean_redcap_name — clean_redcap_name","text":"x vector data frame cleaning","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"clean_redcap_name — clean_redcap_name","text":"vector data frame, format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert single digits to words — d2w","title":"Convert single digits to words — d2w","text":"Convert single digits words","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert single digits to words — d2w","text":"","code":"d2w(x, lang = \"en\", neutrum = FALSE, everything = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert single digits to words — d2w","text":"x data. Handle vectors, data.frames lists lang language. Danish (da) English (en), Default \"en\" neutrum numbers depending counted word everything flag also split numbers >9 single digits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert single digits to words — d2w","text":"returns characters format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert single digits to words — d2w","text":"","code":"d2w(c(2:8,21)) #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" \"21\"    d2w(data.frame(2:7,3:8,1),lang=\"da\",neutrum=TRUE) #>   X2.7 X3.8 X1 #> 1   to  tre et #> 2  tre fire et #> 3 fire  fem et #> 4  fem seks et #> 5 seks  syv et #> 6  syv otte et  ## If everything=T, also larger numbers are reduced. ## Elements in the list are same length as input d2w(list(2:8,c(2,6,4,23),2), everything=TRUE) #> [[1]] #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" #>  #> [[2]] #> [1] \"two\"       \"six\"       \"four\"      \"two three\" #>  #> [[3]] #> [1] \"two\" #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set to data dictionary function — ds2dd","title":"Data set to data dictionary function — ds2dd","text":"Migrated stRoke ds2dd(). Fits better functionality 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE,   metadata = names(redcapcast_meta) )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload. metadata Metadata column names. Default included REDCapCAST::redcapcast_data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data set to data dictionary function — ds2dd","text":"","code":"redcapcast_data$record_id <- seq_len(nrow(redcapcast_data)) ds2dd(redcapcast_data, include.column.names=TRUE) #> $DataDictionary #>                      field_name form_name section_header field_type #> 1                     record_id     basis             NA       text #> 2             redcap_event_name     basis             NA       text #> 3      redcap_repeat_instrument     basis             NA       text #> 4        redcap_repeat_instance     basis             NA       text #> 5                           cpr     basis             NA       text #> 6                     inclusion     basis             NA       text #> 7                           dob     basis             NA       text #> 8                           age     basis             NA       text #> 9                   age_integer     basis             NA       text #> 10                          sex     basis             NA       text #> 11                 cohabitation     basis             NA       text #> 12                 hypertension     basis             NA       text #> 13                     diabetes     basis             NA       text #> 14                       region     basis             NA       text #> 15 baseline_data_start_complete     basis             NA       text #> 16                 mrs_assessed     basis             NA       text #> 17                     mrs_date     basis             NA       text #> 18                    mrs_score     basis             NA       text #> 19                 mrs_complete     basis             NA       text #> 20                   event_date     basis             NA       text #> 21                   event_type     basis             NA       text #> 22           new_event_complete     basis             NA       text #>                     field_label select_choices_or_calculations field_note #> 1                     record_id                             NA         NA #> 2             redcap_event_name                             NA         NA #> 3      redcap_repeat_instrument                             NA         NA #> 4        redcap_repeat_instance                             NA         NA #> 5                           cpr                             NA         NA #> 6                     inclusion                             NA         NA #> 7                           dob                             NA         NA #> 8                           age                             NA         NA #> 9                   age_integer                             NA         NA #> 10                          sex                             NA         NA #> 11                 cohabitation                             NA         NA #> 12                 hypertension                             NA         NA #> 13                     diabetes                             NA         NA #> 14                       region                             NA         NA #> 15 baseline_data_start_complete                             NA         NA #> 16                 mrs_assessed                             NA         NA #> 17                     mrs_date                             NA         NA #> 18                    mrs_score                             NA         NA #> 19                 mrs_complete                             NA         NA #> 20                   event_date                             NA         NA #> 21                   event_type                             NA         NA #> 22           new_event_complete                             NA         NA #>    text_validation_type_or_show_slider_number text_validation_min #> 1                                          NA                  NA #> 2                                          NA                  NA #> 3                                          NA                  NA #> 4                                          NA                  NA #> 5                                          NA                  NA #> 6                                          NA                  NA #> 7                                          NA                  NA #> 8                                          NA                  NA #> 9                                          NA                  NA #> 10                                         NA                  NA #> 11                                         NA                  NA #> 12                                         NA                  NA #> 13                                         NA                  NA #> 14                                         NA                  NA #> 15                                         NA                  NA #> 16                                         NA                  NA #> 17                                         NA                  NA #> 18                                         NA                  NA #> 19                                         NA                  NA #> 20                                         NA                  NA #> 21                                         NA                  NA #> 22                                         NA                  NA #>    text_validation_max identifier branching_logic required_field #> 1                   NA         NA              NA             NA #> 2                   NA         NA              NA             NA #> 3                   NA         NA              NA             NA #> 4                   NA         NA              NA             NA #> 5                   NA         NA              NA             NA #> 6                   NA         NA              NA             NA #> 7                   NA         NA              NA             NA #> 8                   NA         NA              NA             NA #> 9                   NA         NA              NA             NA #> 10                  NA         NA              NA             NA #> 11                  NA         NA              NA             NA #> 12                  NA         NA              NA             NA #> 13                  NA         NA              NA             NA #> 14                  NA         NA              NA             NA #> 15                  NA         NA              NA             NA #> 16                  NA         NA              NA             NA #> 17                  NA         NA              NA             NA #> 18                  NA         NA              NA             NA #> 19                  NA         NA              NA             NA #> 20                  NA         NA              NA             NA #> 21                  NA         NA              NA             NA #> 22                  NA         NA              NA             NA #>    custom_alignment question_number matrix_group_name matrix_ranking #> 1                NA              NA                NA             NA #> 2                NA              NA                NA             NA #> 3                NA              NA                NA             NA #> 4                NA              NA                NA             NA #> 5                NA              NA                NA             NA #> 6                NA              NA                NA             NA #> 7                NA              NA                NA             NA #> 8                NA              NA                NA             NA #> 9                NA              NA                NA             NA #> 10               NA              NA                NA             NA #> 11               NA              NA                NA             NA #> 12               NA              NA                NA             NA #> 13               NA              NA                NA             NA #> 14               NA              NA                NA             NA #> 15               NA              NA                NA             NA #> 16               NA              NA                NA             NA #> 17               NA              NA                NA             NA #> 18               NA              NA                NA             NA #> 19               NA              NA                NA             NA #> 20               NA              NA                NA             NA #> 21               NA              NA                NA             NA #> 22               NA              NA                NA             NA #>    field_annotation #> 1                NA #> 2                NA #> 3                NA #> 4                NA #> 5                NA #> 6                NA #> 7                NA #> 8                NA #> 9                NA #> 10               NA #> 11               NA #> 12               NA #> 13               NA #> 14               NA #> 15               NA #> 16               NA #> 17               NA #> 18               NA #> 19               NA #> 20               NA #> 21               NA #> 22               NA #>  #> $`Column names` #>  [1] \"record_id\"                    \"redcap_event_name\"            #>  [3] \"redcap_repeat_instrument\"     \"redcap_repeat_instance\"       #>  [5] \"cpr\"                          \"inclusion\"                    #>  [7] \"dob\"                          \"age\"                          #>  [9] \"age_integer\"                  \"sex\"                          #> [11] \"cohabitation\"                 \"hypertension\"                 #> [13] \"diabetes\"                     \"region\"                       #> [15] \"baseline_data_start_complete\" \"mrs_assessed\"                 #> [17] \"mrs_date\"                     \"mrs_score\"                    #> [19] \"mrs_complete\"                 \"event_date\"                   #> [21] \"event_type\"                   \"new_event_complete\"           #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"Secure API key storage and data acquisition in one — easy_redcap","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"Secure API key storage data acquisition one","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"easy_redcap(project.name, widen.data = TRUE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"project.name name current project (key storage `keyring::key_set()`) widen.data argument widen exported data ... arguments passed `REDCapCAST::read_redcap_tables()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"data.frame list depending widen.data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":null,"dir":"Reference","previous_headings":"","what":"focused_metadata — focused_metadata","title":"focused_metadata — focused_metadata","text":"Extracts limited metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"focused_metadata — focused_metadata","text":"","code":"focused_metadata(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"focused_metadata — focused_metadata","text":"metadata dataframe containing metadata vars_in_data Vector variable names dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"focused_metadata — focused_metadata","text":"dataframe containing metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":null,"dir":"Reference","previous_headings":"","what":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"Retrieve project API key stored, , set retrieve","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"","code":"get_api_key(key.name)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"key.name character vector key name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":null,"dir":"Reference","previous_headings":"","what":"Match fields to forms — match_fields_to_form","title":"Match fields to forms — match_fields_to_form","text":"Match fields forms","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match fields to forms — match_fields_to_form","text":"","code":"match_fields_to_form(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match fields to forms — match_fields_to_form","text":"metadata data frame containing field names form names vars_in_data character vector variable names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match fields to forms — match_fields_to_form","text":"data frame containing field names form names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":null,"dir":"Reference","previous_headings":"","what":"Download REDCap data — read_redcap_tables","title":"Download REDCap data — read_redcap_tables","text":"Implementation REDCap_split focused data acquisition approach using REDCapR::redcap_read downloading specified fields, forms /events using built-focused_metadata including clean-. Works classical longitudinal projects without repeating instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download REDCap data — read_redcap_tables","text":"","code":"read_redcap_tables(   uri,   token,   records = NULL,   fields = NULL,   events = NULL,   forms = NULL,   raw_or_label = \"label\",   split_forms = \"all\",   generics = c(\"record_id\", \"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download REDCap data — read_redcap_tables","text":"uri REDCap database uri token API token records records download fields fields download events events download forms forms download raw_or_label raw label tags split_forms Whether split \"repeating\" \"\" forms, default . generics vector auto-generated generic variable names ignore discarding empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download REDCap data — read_redcap_tables","text":"list instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download REDCap data — read_redcap_tables","text":"","code":"# Examples will be provided later"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":null,"dir":"Reference","previous_headings":"","what":"Redcap Wider — redcap_wider","title":"Redcap Wider — redcap_wider","text":"Converts list REDCap data frames long wide format. Handles longitudinal projects, yet repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Redcap Wider — redcap_wider","text":"","code":"redcap_wider(   list,   event.glue = \"{.value}_{redcap_event_name}\",   inst.glue = \"{.value}_{redcap_repeat_instance}\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Redcap Wider — redcap_wider","text":"list list data frames. event.glue dplyr::glue string repeated events naming inst.glue dplyr::glue string repeated instruments naming","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Redcap Wider — redcap_wider","text":"list data frames wide format.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Redcap Wider — redcap_wider","text":"","code":"list <- list(data.frame(record_id = c(1,2,1,2), redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"), age = c(25,26,27,28)), data.frame(record_id = c(1,2), redcap_event_name = c(\"baseline\", \"baseline\"), gender = c(\"male\", \"female\"))) redcap_wider(list) #> Joining with `by = join_by(record_id)` #>   record_id age_baseline age_followup gender #> 1         1           25           27   male #> 2         2           26           28 female"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set for demonstration — redcapcast_data","title":"Data set for demonstration — redcapcast_data","text":"small dataset REDCap database demonstrational purposes. Contains synthetic data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set for demonstration — redcapcast_data","text":"","code":"data(redcapcast_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data set for demonstration — redcapcast_data","text":"data frame 22 variables: record_id ID, numeric redcap_event_name Event name, character redcap_repeat_instrument Repeat instrument, character redcap_repeat_instance Repeat instance, numeric cpr CPR number, character inclusion Inclusion date, date dob Date birth, date age Age decimal, numeric age_integer Age integer, numeric sex Legal sex, character cohabitation Cohabitation status, character hypertension Hypertension, character diabetes diabetes, character region region, character baseline_data_start_complete Completed, character mrs_assessed mRS Assessed, character mrs_date Assesment date, date mrs_score Score, numeric mrs_complete Complete, numeric event_date Event date, date event_type Event type, character new_event_complete Completed, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCap metadata from data base — redcapcast_meta","title":"REDCap metadata from data base — redcapcast_meta","text":"metadata dataset REDCap database demonstrational purposes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"REDCap metadata from data base — redcapcast_meta","text":"","code":"data(redcapcast_meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"REDCap metadata from data base — redcapcast_meta","text":"data frame 22 variables: field_name field_name, character form_name form_name, character section_header section_header, character field_type field_type, character field_label field_label, character select_choices_or_calculations select_choices_or_calculations, character field_note field_note, character text_validation_type_or_show_slider_number text_validation_type_or_show_slider_number, character text_validation_min text_validation_min, character text_validation_max text_validation_max, character identifier identifier, character branching_logic branching_logic, character required_field required_field, character custom_alignment custom_alignment, character question_number question_number, character matrix_group_name matrix_group_name, character matrix_ranking matrix_ranking, character field_annotation field_annotation, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Sanitize list of data frames — sanitize_split","title":"Sanitize list of data frames — sanitize_split","text":"Removing empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sanitize list of data frames — sanitize_split","text":"","code":"sanitize_split(   l,   generic.names = c(\"record_id\", \"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sanitize list of data frames — sanitize_split","text":"l list data frames. generic.names vector generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sanitize list of data frames — sanitize_split","text":"list data frames generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":null,"dir":"Reference","previous_headings":"","what":"Split a data frame into separate tables for each form — split_non_repeating_forms","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"Split data frame separate tables form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"split_non_repeating_forms(table, universal_fields, fields)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"table data frame universal_fields character vector fields included every table fields two-column matrix containing names fields included form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"list data frames, one non-repeating form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"# Create a table table <- data.frame(   id = c(1, 2, 3, 4, 5),   form_a_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_a_age = c(25, 30, 25, 15, 20),   form_b_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_b_gender = c(\"M\", \"F\", \"M\", \"F\", \"F\") )  # Create the universal fields universal_fields <- c(\"id\")  # Create the fields fields <- matrix(   c(\"form_a_name\", \"form_a\",     \"form_a_age\", \"form_a\",     \"form_b_name\", \"form_b\",     \"form_b_gender\", \"form_b\"),   ncol = 2, byrow = TRUE )  # Split the table split_non_repeating_forms(table, universal_fields, fields) #> $form_a_age #>   id #> 1  1 #> 2  2 #> 3  3 #> 4  4 #> 5  5 #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended string splitting — strsplitx","title":"Extended string splitting — strsplitx","text":"Can used substitute base function. Main claim fame easing split around defined delimiter, see example.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended string splitting — strsplitx","text":"","code":"strsplitx(x, split, type = \"classic\", perl = FALSE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended string splitting — strsplitx","text":"x data split delimiter type Split type. Can c(\"classic\", \"\", \"\", \"around\") perl perl param strsplit() ... additional parameters passed base strsplit handling splits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended string splitting — strsplitx","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended string splitting — strsplitx","text":"","code":"test <- c(\"12 months follow-up\", \"3 steps\", \"mRS 6 weeks\", \"Counting to 231 now\") strsplitx(test,\"[0-9]\",type=\"around\") #> [[1]] #> [1] \"1\"                 \"2\"                 \" months follow-up\" #>  #> [[2]] #> [1] \"3\"      \" steps\" #>  #> [[3]] #> [1] \"mRS \"   \"6\"      \" weeks\" #>  #> [[4]] #> [1] \"Counting to \" \"2\"            \"3\"            \"1\"            \" now\"         #>"},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-1-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.1.1","text":"Fix: read_redcap_tables(): checking form names based data dictionary allow handling non-longitudinal projects. Prints invalid form names invalid event names. invalid form names supplied REDCapR::redcap_read() (backbone), forms exported, want focused approach. Invalid event names give output rather peculiar formatting. Checking field names validity also added.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-23121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.12.1","title":"REDCapCAST 23.12.1","text":"CRAN release: 2023-12-20 One new function ease secure dataset retrieval bug fixes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-12-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.12.1","text":"New: easy_redcap() function ease retrieval dataset read_redcap_tables() keyring-package based key storage, handles secure API set, storage retrieval. Relies small helper function, get_api_key(), wraps relevant keyring-functions. Includes option cast data wide format flag widen.data. Fix: REDCap_split(): using function , supplying data set check boxes fail metadata supplied tibble. Metadata now converted data.frame. Fixed. Fix: read_redcap_tables(): fixed bug supplying events.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2362","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.2","title":"REDCapCAST 23.6.2","text":"CRAN release: 2023-07-04 version marks introduction helper functions handle database creation.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.6.2","text":"New: ds2dd() function migrating stRoke-package. Assists building data dictionary REDCap dataset. New: strsplitx() function ease string splitting extension base::strsplit(). Inspiration https://stackoverflow.com//11014253/21019325 https://www.r-bloggers.com/2018/04/strsplit--keeping--delimiter/. New: d2n() function converts single digits written numbers. Used sanitize variable form names REDCap database creation. universal number word suggest english::word() xfun::numbers_to_words(), though testing .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2361","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.1","title":"REDCapCAST 23.6.1","text":"CRAN release: 2023-06-06","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-6-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.6.1","text":"Updated description. Look! hex icon! Heading CRAN.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-4-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.4.1","text":"Aiming CRAN","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-3-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.3.2","text":"Page added. Vignettes follow. GithubActions tests added code coverage assessed. Badge galore..","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"new-name-redcapcast-23-3-1","dir":"Changelog","previous_headings":"","what":"New name: REDCapCAST","title":"REDCapCAST 23.3.1","text":"reflect new functions limitation working R, changed naming fork, still, course, maintaining status fork. versioning moved monthly naming convention. main goal package keep option export defined subset whole dataset REDCap server made possible REDCapR::redcap_read() function, combine work put REDCapRITS package handling longitudinal projects /projects repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-3-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 23.3.1","text":"read_redcap_tables() NEW: function mainly implementation combined use REDCapR::readcap_read() REDCap_split() maintain focused nature REDCapR::readcap_read(), download specified data. Also implements tests valid form names event names. usual fall-back solution get data. redcap_wider() NEW: function pivots long data frames read_redcap_tables() using tidyr::pivot_wider(). focused_metadata() NEW: hidden helper function enable focused data acquisition approach handle subset metadata corresponding focused dataset.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"notes-23-3-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"REDCapCAST 23.3.1","text":"metadata handling IMPROVED: improved handling different column names matadata (DataDictionary) REDCap dependent whether acquired thorugh api og downloaded server.","code":""}]
+[{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. 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Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty","title":"GNU General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see <http://www.gnu.org/licenses/>. GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"splitting-the-dataset","dir":"Articles","previous_headings":"","what":"Splitting the dataset","title":"Introduction","text":"","code":"redcapcast_data |> gt::gt() redcapcast_meta |> gt::gt() list <-   REDCap_split(records = redcapcast_data,                            metadata = redcapcast_meta,                            forms = \"repeating\") str(list) #> List of 2 #>  $          :'data.frame':   9 obs. of  17 variables: #>   ..$ record_id                   : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name           : chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:9] \"1203401OB4\" \"0102342303\" NA \"2301569823\" ... #>   ..$ inclusion                   : Date[1:9], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ dob                         : Date[1:9], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:9] 83 89.1 NA 66.1 NA ... #>   ..$ age_integer                 : num [1:9] 83 89 NA 66 NA NA 117 NA 126 #>   ..$ sex                         : chr [1:9] \"female\" \"male\" NA \"male\" ... #>   ..$ cohabitation                : chr [1:9] \"Yes\" \"Yes\" NA \"No\" ... #>   ..$ hypertension                : chr [1:9] \"No\" \"No\" NA \"Yes\" ... #>   ..$ diabetes                    : chr [1:9] \"Yes\" \"No\" NA \"Yes\" ... #>   ..$ region                      : chr [1:9] \"East\" \"South\" NA \"North\" ... #>   ..$ baseline_data_start_complete: chr [1:9] \"Incomplete\" \"Incomplete\" NA \"Incomplete\" ... #>   ..$ mrs_assessed                : chr [1:9] \"Yes\" \"Yes\" \"Yes\" NA ... #>   ..$ mrs_date                    : Date[1:9], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score                   : num [1:9] 1 1 3 NA 2 1 NA NA NA #>   ..$ mrs_complete                : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event:'data.frame':   9 obs. of  7 variables: #>   ..$ record_id               : num [1:9] 2 3 3 3 3 3 4 4 4 #>   ..$ redcap_event_name       : chr [1:9] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:9] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:9] 1 1 2 1 2 3 1 2 3 #>   ..$ event_date              : Date[1:9], format: \"2023-03-13\" \"2022-11-08\" ... #>   ..$ event_type              : chr [1:9] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   ..$ new_event_complete      : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... list <-   REDCap_split(records = redcapcast_data,                            metadata = redcapcast_meta,                            forms = \"all\") str(list) #> List of 3 #>  $ baseline_data_start:'data.frame': 9 obs. of  13 variables: #>   ..$ record_id                   : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name           : chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:9] \"1203401OB4\" \"0102342303\" NA \"2301569823\" ... #>   ..$ inclusion                   : Date[1:9], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ dob                         : Date[1:9], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:9] 83 89.1 NA 66.1 NA ... #>   ..$ age_integer                 : num [1:9] 83 89 NA 66 NA NA 117 NA 126 #>   ..$ sex                         : chr [1:9] \"female\" \"male\" NA \"male\" ... #>   ..$ cohabitation                : chr [1:9] \"Yes\" \"Yes\" NA \"No\" ... #>   ..$ hypertension                : chr [1:9] \"No\" \"No\" NA \"Yes\" ... #>   ..$ diabetes                    : chr [1:9] \"Yes\" \"No\" NA \"Yes\" ... #>   ..$ region                      : chr [1:9] \"East\" \"South\" NA \"North\" ... #>   ..$ baseline_data_start_complete: chr [1:9] \"Incomplete\" \"Incomplete\" NA \"Incomplete\" ... #>  $ mrs                :'data.frame': 9 obs. of  6 variables: #>   ..$ record_id        : num [1:9] 1 2 2 3 3 3 4 4 5 #>   ..$ redcap_event_name: chr [1:9] \"inclusion\" \"inclusion\" \"follow1\" \"inclusion\" ... #>   ..$ mrs_assessed     : chr [1:9] \"Yes\" \"Yes\" \"Yes\" NA ... #>   ..$ mrs_date         : Date[1:9], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score        : num [1:9] 1 1 3 NA 2 1 NA NA NA #>   ..$ mrs_complete     : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event          :'data.frame': 9 obs. of  7 variables: #>   ..$ record_id               : num [1:9] 2 3 3 3 3 3 4 4 4 #>   ..$ redcap_event_name       : chr [1:9] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:9] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:9] 1 1 2 1 2 3 1 2 3 #>   ..$ event_date              : Date[1:9], format: \"2023-03-13\" \"2022-11-08\" ... #>   ..$ event_type              : chr [1:9] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   ..$ new_event_complete      : chr [1:9] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ..."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"reading-data-from-redcap","dir":"Articles","previous_headings":"","what":"Reading data from REDCap","title":"Introduction","text":"function wraps demonstrated function get dataset, metadata, apply REDCap_splitfunction bit cleaning. just cuts outs steps easier approach. function works similar REDCapR::redcap_read() allowing specify fields, events forms export instead exporting whole database filtering afterwards. believe better safer, focused approach.","code":"# read_redcap_tables(uri = \"YOUR URI\", token = \"YOUR TOKEN\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Introduction.html","id":"pivotting-to-wider-format","dir":"Articles","previous_headings":"","what":"Pivotting to wider format","title":"Introduction","text":"","code":"# redcap_wider(ds)"},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Paul Egeler. Author.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo , Egeler P (2024). REDCapCAST: REDCap Castellated Data Handling. R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/, https://github.com/agdamsbo/REDCapCAST.","code":"@Manual{,   title = {REDCapCAST: REDCap Castellated Data Handling},   author = {Andreas Gammelgaard Damsbo and Paul Egeler},   year = {2024},   note = {R package version 24.1.1, https://agdamsbo.github.io/REDCapCAST/},   url = {https://github.com/agdamsbo/REDCapCAST}, }"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"redcapcast-package-","dir":"","previous_headings":"","what":"REDCap Castellated Data Handling","title":"REDCap Castellated Data Handling","text":"REDCap Castellated data handling using repeated instruments. package fork pegeler/REDCapRITS. REDCapRITS represents great extensive work handle castellated REDCap data different programming languages. fork purely minded R usage includes implementations main REDCap_split function. main goal project allow “minimal data” approach allowing filter records, instruments variables export download data needed. think approach desireable handling sensitive, clinical data. similar functionality available similar tools (like REDCapR REDCapTidieR). Please refer REDCap-Tools great tools.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"use-and-immprovements","dir":"","previous_headings":"","what":"Use and immprovements","title":"REDCap Castellated Data Handling","text":"package primarily relevant working longitudinal projects /projects using repeated instruments. just short descirption main functions: REDcap_split(): Works largely original REDCapRITS::REDCap_split(). takes REDCap dataset metadata (data dictionary) split data set list dataframes instruments. read_redcap_tables(): wraps use REDCapR::redcap_read() REDCap_split() ease export REDCap data. redcap_wider(): pivots data frame repeated instruments wide format utilizing tidyr::pivot_wider() tidyverse. easy_redcap(): combines secure API key storage keyring-package, focused data retrieval optional widening. recommended approach easy data access analysis. Compared original REDCapRITS, matching functions improved accept column naming REDCap data manual download API export.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"future","dir":"","previous_headings":"","what":"Future","title":"REDCap Castellated Data Handling","text":"plan package bundled Handbook working REDCap R. plan also include functionality assist casting (yes, pun intended) initial REDCap database.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"REDCap Castellated Data Handling","text":"package available CRAN. Install latest version: Install latest version directly GitHub:","code":"install.packages(\"REDCapCAST\") remotes::install_github(\"agdamsbo/REDCapCAST\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Split REDCap repeating instruments table into multiple tables — REDCap_split","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"take output REDCap export split base table child tables repeating instrument. Metadata used determine fields included resultant table.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"REDCap_split(   records,   metadata,   primary_table_name = \"\",   forms = c(\"repeating\", \"all\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"records Exported project records. May data.frame, response, character vector containing JSON API call. metadata Project metadata (data dictionary). May data.frame, response, character vector containing JSON API call. primary_table_name Name given list element primary output table (described README.md). Ignored forms = ''. forms Indicate whether create separate tables repeating instruments forms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"list \"data.frame\"s. number tables differ   depending forms option selected.  'repeating': one base table one     tables repeating instrument. '': data.frame instrument, regardless     whether repeating instrument .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"Paul W. Egeler, M.S., GStat","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"if (FALSE) { # Using an API call -------------------------------------------------------  library(RCurl)  # Get the records records <- postForm(   uri = api_url,     # Supply your site-specific URI   token = api_token, # Supply your own API token   content = 'record',   format = 'json',   returnFormat = 'json' )  # Get the metadata metadata <- postForm(   uri = api_url,     # Supply your site-specific URI   token = api_token, # Supply your own API token   content = 'metadata',   format = 'json' )  # Convert exported JSON strings into a list of data.frames REDCapRITS::REDCap_split(records, metadata)  # Using a raw data export -------------------------------------------------  # Get the records records <- read.csv(\"/path/to/data/ExampleProject_DATA_2018-06-03_1700.csv\")  # Get the metadata metadata <- read.csv( \"/path/to/data/ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapRITS::REDCap_split(records, metadata)  # In conjunction with the R export script ---------------------------------  # You must set the working directory first since the REDCap data export # script contains relative file references. old <- getwd() setwd(\"/path/to/data/\")  # Run the data export script supplied by REDCap. # This will create a data.frame of your records called 'data' source(\"ExampleProject_R_2018-06-03_1700.r\")  # Get the metadatan metadata <- read.csv(\"ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapRITS::REDCap_split(data, metadata) setwd(old) }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":null,"dir":"Reference","previous_headings":"","what":"clean_redcap_name — clean_redcap_name","title":"clean_redcap_name — clean_redcap_name","text":"Stepwise removal non-alphanumeric characters, trailing white space, substitutes spaces underscores converts lower case. Trying make different naming conventions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"clean_redcap_name — clean_redcap_name","text":"","code":"clean_redcap_name(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"clean_redcap_name — clean_redcap_name","text":"x vector data frame cleaning","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"clean_redcap_name — clean_redcap_name","text":"vector data frame, format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert single digits to words — d2w","title":"Convert single digits to words — d2w","text":"Convert single digits words","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert single digits to words — d2w","text":"","code":"d2w(x, lang = \"en\", neutrum = FALSE, everything = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert single digits to words — d2w","text":"x data. Handle vectors, data.frames lists lang language. Danish (da) English (en), Default \"en\" neutrum numbers depending counted word everything flag also split numbers >9 single digits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert single digits to words — d2w","text":"returns characters format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert single digits to words — d2w","text":"","code":"d2w(c(2:8,21)) #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" \"21\"    d2w(data.frame(2:7,3:8,1),lang=\"da\",neutrum=TRUE) #>   X2.7 X3.8 X1 #> 1   to  tre et #> 2  tre fire et #> 3 fire  fem et #> 4  fem seks et #> 5 seks  syv et #> 6  syv otte et  ## If everything=T, also larger numbers are reduced. ## Elements in the list are same length as input d2w(list(2:8,c(2,6,4,23),2), everything=TRUE) #> [[1]] #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" #>  #> [[2]] #> [1] \"two\"       \"six\"       \"four\"      \"two three\" #>  #> [[3]] #> [1] \"two\" #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set to data dictionary function — ds2dd","title":"Data set to data dictionary function — ds2dd","text":"Migrated stRoke ds2dd(). Fits better functionality 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE,   metadata = names(redcapcast_meta) )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload. metadata Metadata column names. Default included REDCapCAST::redcapcast_data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Data set to data dictionary function — ds2dd","text":"","code":"redcapcast_data$record_id <- seq_len(nrow(redcapcast_data)) ds2dd(redcapcast_data, include.column.names=TRUE) #> $DataDictionary #>                      field_name form_name section_header field_type #> 1                     record_id     basis             NA       text #> 2             redcap_event_name     basis             NA       text #> 3      redcap_repeat_instrument     basis             NA       text #> 4        redcap_repeat_instance     basis             NA       text #> 5                           cpr     basis             NA       text #> 6                     inclusion     basis             NA       text #> 7                           dob     basis             NA       text #> 8                           age     basis             NA       text #> 9                   age_integer     basis             NA       text #> 10                          sex     basis             NA       text #> 11                 cohabitation     basis             NA       text #> 12                 hypertension     basis             NA       text #> 13                     diabetes     basis             NA       text #> 14                       region     basis             NA       text #> 15 baseline_data_start_complete     basis             NA       text #> 16                 mrs_assessed     basis             NA       text #> 17                     mrs_date     basis             NA       text #> 18                    mrs_score     basis             NA       text #> 19                 mrs_complete     basis             NA       text #> 20                   event_date     basis             NA       text #> 21                   event_type     basis             NA       text #> 22           new_event_complete     basis             NA       text #>                     field_label select_choices_or_calculations field_note #> 1                     record_id                             NA         NA #> 2             redcap_event_name                             NA         NA #> 3      redcap_repeat_instrument                             NA         NA #> 4        redcap_repeat_instance                             NA         NA #> 5                           cpr                             NA         NA #> 6                     inclusion                             NA         NA #> 7                           dob                             NA         NA #> 8                           age                             NA         NA #> 9                   age_integer                             NA         NA #> 10                          sex                             NA         NA #> 11                 cohabitation                             NA         NA #> 12                 hypertension                             NA         NA #> 13                     diabetes                             NA         NA #> 14                       region                             NA         NA #> 15 baseline_data_start_complete                             NA         NA #> 16                 mrs_assessed                             NA         NA #> 17                     mrs_date                             NA         NA #> 18                    mrs_score                             NA         NA #> 19                 mrs_complete                             NA         NA #> 20                   event_date                             NA         NA #> 21                   event_type                             NA         NA #> 22           new_event_complete                             NA         NA #>    text_validation_type_or_show_slider_number text_validation_min #> 1                                          NA                  NA #> 2                                          NA                  NA #> 3                                          NA                  NA #> 4                                          NA                  NA #> 5                                          NA                  NA #> 6                                          NA                  NA #> 7                                          NA                  NA #> 8                                          NA                  NA #> 9                                          NA                  NA #> 10                                         NA                  NA #> 11                                         NA                  NA #> 12                                         NA                  NA #> 13                                         NA                  NA #> 14                                         NA                  NA #> 15                                         NA                  NA #> 16                                         NA                  NA #> 17                                         NA                  NA #> 18                                         NA                  NA #> 19                                         NA                  NA #> 20                                         NA                  NA #> 21                                         NA                  NA #> 22                                         NA                  NA #>    text_validation_max identifier branching_logic required_field #> 1                   NA         NA              NA             NA #> 2                   NA         NA              NA             NA #> 3                   NA         NA              NA             NA #> 4                   NA         NA              NA             NA #> 5                   NA         NA              NA             NA #> 6                   NA         NA              NA             NA #> 7                   NA         NA              NA             NA #> 8                   NA         NA              NA             NA #> 9                   NA         NA              NA             NA #> 10                  NA         NA              NA             NA #> 11                  NA         NA              NA             NA #> 12                  NA         NA              NA             NA #> 13                  NA         NA              NA             NA #> 14                  NA         NA              NA             NA #> 15                  NA         NA              NA             NA #> 16                  NA         NA              NA             NA #> 17                  NA         NA              NA             NA #> 18                  NA         NA              NA             NA #> 19                  NA         NA              NA             NA #> 20                  NA         NA              NA             NA #> 21                  NA         NA              NA             NA #> 22                  NA         NA              NA             NA #>    custom_alignment question_number matrix_group_name matrix_ranking #> 1                NA              NA                NA             NA #> 2                NA              NA                NA             NA #> 3                NA              NA                NA             NA #> 4                NA              NA                NA             NA #> 5                NA              NA                NA             NA #> 6                NA              NA                NA             NA #> 7                NA              NA                NA             NA #> 8                NA              NA                NA             NA #> 9                NA              NA                NA             NA #> 10               NA              NA                NA             NA #> 11               NA              NA                NA             NA #> 12               NA              NA                NA             NA #> 13               NA              NA                NA             NA #> 14               NA              NA                NA             NA #> 15               NA              NA                NA             NA #> 16               NA              NA                NA             NA #> 17               NA              NA                NA             NA #> 18               NA              NA                NA             NA #> 19               NA              NA                NA             NA #> 20               NA              NA                NA             NA #> 21               NA              NA                NA             NA #> 22               NA              NA                NA             NA #>    field_annotation #> 1                NA #> 2                NA #> 3                NA #> 4                NA #> 5                NA #> 6                NA #> 7                NA #> 8                NA #> 9                NA #> 10               NA #> 11               NA #> 12               NA #> 13               NA #> 14               NA #> 15               NA #> 16               NA #> 17               NA #> 18               NA #> 19               NA #> 20               NA #> 21               NA #> 22               NA #>  #> $`Column names` #>  [1] \"record_id\"                    \"redcap_event_name\"            #>  [3] \"redcap_repeat_instrument\"     \"redcap_repeat_instance\"       #>  [5] \"cpr\"                          \"inclusion\"                    #>  [7] \"dob\"                          \"age\"                          #>  [9] \"age_integer\"                  \"sex\"                          #> [11] \"cohabitation\"                 \"hypertension\"                 #> [13] \"diabetes\"                     \"region\"                       #> [15] \"baseline_data_start_complete\" \"mrs_assessed\"                 #> [17] \"mrs_date\"                     \"mrs_score\"                    #> [19] \"mrs_complete\"                 \"event_date\"                   #> [21] \"event_type\"                   \"new_event_complete\"           #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"Secure API key storage and data acquisition in one — easy_redcap","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"Secure API key storage data acquisition one","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"easy_redcap(project.name, widen.data = TRUE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"project.name name current project (key storage `keyring::key_set()`) widen.data argument widen exported data ... arguments passed `REDCapCAST::read_redcap_tables()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"data.frame list depending widen.data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":null,"dir":"Reference","previous_headings":"","what":"focused_metadata — focused_metadata","title":"focused_metadata — focused_metadata","text":"Extracts limited metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"focused_metadata — focused_metadata","text":"","code":"focused_metadata(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"focused_metadata — focused_metadata","text":"metadata dataframe containing metadata vars_in_data Vector variable names dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"focused_metadata — focused_metadata","text":"dataframe containing metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":null,"dir":"Reference","previous_headings":"","what":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"Retrieve project API key stored, , set retrieve","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"","code":"get_api_key(key.name)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"key.name character vector key name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":null,"dir":"Reference","previous_headings":"","what":"Match fields to forms — match_fields_to_form","title":"Match fields to forms — match_fields_to_form","text":"Match fields forms","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match fields to forms — match_fields_to_form","text":"","code":"match_fields_to_form(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match fields to forms — match_fields_to_form","text":"metadata data frame containing field names form names vars_in_data character vector variable names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match fields to forms — match_fields_to_form","text":"data frame containing field names form names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":null,"dir":"Reference","previous_headings":"","what":"Download REDCap data — read_redcap_tables","title":"Download REDCap data — read_redcap_tables","text":"Implementation REDCap_split focused data acquisition approach using REDCapR::redcap_read downloading specified fields, forms /events using built-focused_metadata including clean-. Works classical longitudinal projects without repeating instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download REDCap data — read_redcap_tables","text":"","code":"read_redcap_tables(   uri,   token,   records = NULL,   fields = NULL,   events = NULL,   forms = NULL,   raw_or_label = \"label\",   split_forms = \"all\",   generics = c(\"record_id\", \"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download REDCap data — read_redcap_tables","text":"uri REDCap database uri token API token records records download fields fields download events events download forms forms download raw_or_label raw label tags split_forms Whether split \"repeating\" \"\" forms, default . generics vector auto-generated generic variable names ignore discarding empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download REDCap data — read_redcap_tables","text":"list instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download REDCap data — read_redcap_tables","text":"","code":"# Examples will be provided later"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":null,"dir":"Reference","previous_headings":"","what":"Redcap Wider — redcap_wider","title":"Redcap Wider — redcap_wider","text":"Converts list REDCap data frames long wide format. Handles longitudinal projects, yet repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Redcap Wider — redcap_wider","text":"","code":"redcap_wider(   list,   event.glue = \"{.value}_{redcap_event_name}\",   inst.glue = \"{.value}_{redcap_repeat_instance}\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Redcap Wider — redcap_wider","text":"list list data frames. event.glue dplyr::glue string repeated events naming inst.glue dplyr::glue string repeated instruments naming","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Redcap Wider — redcap_wider","text":"list data frames wide format.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Redcap Wider — redcap_wider","text":"","code":"list <- list(data.frame(record_id = c(1,2,1,2), redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"), age = c(25,26,27,28)), data.frame(record_id = c(1,2), redcap_event_name = c(\"baseline\", \"baseline\"), gender = c(\"male\", \"female\"))) redcap_wider(list) #> Joining with `by = join_by(record_id)` #>   record_id age_baseline age_followup gender #> 1         1           25           27   male #> 2         2           26           28 female"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set for demonstration — redcapcast_data","title":"Data set for demonstration — redcapcast_data","text":"small dataset REDCap database demonstrational purposes. Contains synthetic data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set for demonstration — redcapcast_data","text":"","code":"data(redcapcast_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data set for demonstration — redcapcast_data","text":"data frame 22 variables: record_id ID, numeric redcap_event_name Event name, character redcap_repeat_instrument Repeat instrument, character redcap_repeat_instance Repeat instance, numeric cpr CPR number, character inclusion Inclusion date, date dob Date birth, date age Age decimal, numeric age_integer Age integer, numeric sex Legal sex, character cohabitation Cohabitation status, character hypertension Hypertension, character diabetes diabetes, character region region, character baseline_data_start_complete Completed, character mrs_assessed mRS Assessed, character mrs_date Assesment date, date mrs_score Score, numeric mrs_complete Complete, numeric event_date Event date, date event_type Event type, character new_event_complete Completed, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCap metadata from data base — redcapcast_meta","title":"REDCap metadata from data base — redcapcast_meta","text":"metadata dataset REDCap database demonstrational purposes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"REDCap metadata from data base — redcapcast_meta","text":"","code":"data(redcapcast_meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"REDCap metadata from data base — redcapcast_meta","text":"data frame 22 variables: field_name field_name, character form_name form_name, character section_header section_header, character field_type field_type, character field_label field_label, character select_choices_or_calculations select_choices_or_calculations, character field_note field_note, character text_validation_type_or_show_slider_number text_validation_type_or_show_slider_number, character text_validation_min text_validation_min, character text_validation_max text_validation_max, character identifier identifier, character branching_logic branching_logic, character required_field required_field, character custom_alignment custom_alignment, character question_number question_number, character matrix_group_name matrix_group_name, character matrix_ranking matrix_ranking, character field_annotation field_annotation, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Sanitize list of data frames — sanitize_split","title":"Sanitize list of data frames — sanitize_split","text":"Removing empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sanitize list of data frames — sanitize_split","text":"","code":"sanitize_split(   l,   generic.names = c(\"record_id\", \"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sanitize list of data frames — sanitize_split","text":"l list data frames. generic.names vector generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sanitize list of data frames — sanitize_split","text":"list data frames generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":null,"dir":"Reference","previous_headings":"","what":"Split a data frame into separate tables for each form — split_non_repeating_forms","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"Split data frame separate tables form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"split_non_repeating_forms(table, universal_fields, fields)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"table data frame universal_fields character vector fields included every table fields two-column matrix containing names fields included form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"list data frames, one non-repeating form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"# Create a table table <- data.frame(   id = c(1, 2, 3, 4, 5),   form_a_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_a_age = c(25, 30, 25, 15, 20),   form_b_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_b_gender = c(\"M\", \"F\", \"M\", \"F\", \"F\") )  # Create the universal fields universal_fields <- c(\"id\")  # Create the fields fields <- matrix(   c(\"form_a_name\", \"form_a\",     \"form_a_age\", \"form_a\",     \"form_b_name\", \"form_b\",     \"form_b_gender\", \"form_b\"),   ncol = 2, byrow = TRUE )  # Split the table split_non_repeating_forms(table, universal_fields, fields) #> $form_a_age #>   id #> 1  1 #> 2  2 #> 3  3 #> 4  4 #> 5  5 #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended string splitting — strsplitx","title":"Extended string splitting — strsplitx","text":"Can used substitute base function. Main claim fame easing split around defined delimiter, see example.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended string splitting — strsplitx","text":"","code":"strsplitx(x, split, type = \"classic\", perl = FALSE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended string splitting — strsplitx","text":"x data split delimiter type Split type. Can c(\"classic\", \"\", \"\", \"around\") perl perl param strsplit() ... additional parameters passed base strsplit handling splits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended string splitting — strsplitx","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended string splitting — strsplitx","text":"","code":"test <- c(\"12 months follow-up\", \"3 steps\", \"mRS 6 weeks\", \"Counting to 231 now\") strsplitx(test,\"[0-9]\",type=\"around\") #> [[1]] #> [1] \"1\"                 \"2\"                 \" months follow-up\" #>  #> [[2]] #> [1] \"3\"      \" steps\" #>  #> [[3]] #> [1] \"mRS \"   \"6\"      \" weeks\" #>  #> [[4]] #> [1] \"Counting to \" \"2\"            \"3\"            \"1\"            \" now\"         #>"},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-1-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.1.1","text":"Fix: read_redcap_tables(): checking form names based data dictionary allow handling non-longitudinal projects. Prints invalid form names invalid event names. invalid form names supplied REDCapR::redcap_read() (backbone), forms exported, want focused approach. Invalid event names give output rather peculiar formatting. Checking field names validity also added.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-23121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.12.1","title":"REDCapCAST 23.12.1","text":"CRAN release: 2023-12-20 One new function ease secure dataset retrieval bug fixes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-12-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.12.1","text":"New: easy_redcap() function ease retrieval dataset read_redcap_tables() keyring-package based key storage, handles secure API set, storage retrieval. Relies small helper function, get_api_key(), wraps relevant keyring-functions. Includes option cast data wide format flag widen.data. Fix: REDCap_split(): using function , supplying data set check boxes fail metadata supplied tibble. Metadata now converted data.frame. Fixed. Fix: read_redcap_tables(): fixed bug supplying events.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2362","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.2","title":"REDCapCAST 23.6.2","text":"CRAN release: 2023-07-04 version marks introduction helper functions handle database creation.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.6.2","text":"New: ds2dd() function migrating stRoke-package. Assists building data dictionary REDCap dataset. New: strsplitx() function ease string splitting extension base::strsplit(). Inspiration https://stackoverflow.com//11014253/21019325 https://www.r-bloggers.com/2018/04/strsplit--keeping--delimiter/. New: d2n() function converts single digits written numbers. Used sanitize variable form names REDCap database creation. universal number word suggest english::word() xfun::numbers_to_words(), though testing .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2361","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.1","title":"REDCapCAST 23.6.1","text":"CRAN release: 2023-06-06","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-6-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.6.1","text":"Updated description. Look! hex icon! Heading CRAN.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-4-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.4.1","text":"Aiming CRAN","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-3-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.3.2","text":"Page added. Vignettes follow. GithubActions tests added code coverage assessed. Badge galore..","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"new-name-redcapcast-23-3-1","dir":"Changelog","previous_headings":"","what":"New name: REDCapCAST","title":"REDCapCAST 23.3.1","text":"reflect new functions limitation working R, changed naming fork, still, course, maintaining status fork. versioning moved monthly naming convention. main goal package keep option export defined subset whole dataset REDCap server made possible REDCapR::redcap_read() function, combine work put REDCapRITS package handling longitudinal projects /projects repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-3-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 23.3.1","text":"read_redcap_tables() NEW: function mainly implementation combined use REDCapR::readcap_read() REDCap_split() maintain focused nature REDCapR::readcap_read(), download specified data. Also implements tests valid form names event names. usual fall-back solution get data. redcap_wider() NEW: function pivots long data frames read_redcap_tables() using tidyr::pivot_wider(). focused_metadata() NEW: hidden helper function enable focused data acquisition approach handle subset metadata corresponding focused dataset.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"notes-23-3-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"REDCapCAST 23.3.1","text":"metadata handling IMPROVED: improved handling different column names matadata (DataDictionary) REDCap dependent whether acquired thorugh api og downloaded server.","code":""}]