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Andreas Gammelgaard Damsbo 2023-12-20 14:47:57 +01:00
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CRAN-SUBMISSION Normal file
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Version: 23.12.1
Date: 2023-12-20 11:25:34 UTC
SHA: 620612f341f34cf92a1c24e2118a635b75273880

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README.md
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@ -14,7 +14,7 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h
REDCap Castellated data handling when using repeated instruments.
This package is a fork of [SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS). The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main `REDCap_split` function.
This package is a fork of [pegeler/REDCapRITS](https://github.com/pegeler/REDCapRITS). The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main `REDCap_split` function.
The main goal for this project was to allow for a "minimal data" approach by allowing to filter records, instruments and variables in the export to only download data needed. I think this approach is desireable for handling sensitive, clinical data. No similar functionality is available from similar tools (like `REDCapR` or `REDCapTidieR`). Please refer to [REDCap-Tools](https://redcap-tools.github.io/) for other great tools.
@ -36,6 +36,12 @@ The plan with this package is to be bundled with a Handbook on working with REDC
## Installation
The package is available on CRAN. Install the latest version:
```
install.packages("REDCapCAST")
```
Install the latest version directly from GitHub:
```

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For a CRAN submission we recommend that you fix all NOTEs, WARNINGs and ERRORs.
## Test environments
- R-hub windows-x86_64-devel (r-devel)
- R-hub ubuntu-gcc-release (r-release)
- R-hub fedora-clang-devel (r-devel)
── R CMD check results ─────────────────────────────────── REDCapCAST 23.12.1 ────
Duration: 22.2s
## R CMD check results
❯ On windows-x86_64-devel (r-devel)
checking CRAN incoming feasibility ... [15s] NOTE
Maintainer: 'Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>'
0 errors ✔ | 0 warnings ✔ | 0 notes ✔
Found the following (possibly) invalid URLs:
URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
From: README.md
Status: 200
Message: OK
R CMD check succeeded
❯ On windows-x86_64-devel (r-devel)
checking for non-standard things in the check directory ... NOTE
❯ On windows-x86_64-devel (r-devel)
checking for detritus in the temp directory ... NOTE
Found the following files/directories:
'lastMiKTeXException'
❯ On ubuntu-gcc-release (r-release)
checking CRAN incoming feasibility ... [8s/35s] NOTE
Maintainer: ‘Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>’
Found the following (possibly) invalid URLs:
URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
From: README.md
Status: 200
Message: OK
❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
checking HTML version of manual ... NOTE
Skipping checking HTML validation: no command 'tidy' found
❯ On fedora-clang-devel (r-devel)
checking CRAN incoming feasibility ... [9s/44s] NOTE
Maintainer: ‘Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>’
Found the following (possibly) invalid URLs:
URL: https://agdamsbo.github.io/REDCapCAST/
From: DESCRIPTION
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://app.codecov.io/gh/agdamsbo/REDCapCAST?branch=master
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://doi.org/10.5281/zenodo.8013984
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/OuhscBbmc/REDCapR
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/agdamsbo/REDCapCAST
From: DESCRIPTION
README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/agdamsbo/REDCapCAST/issues
From: DESCRIPTION
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://github.com/pegeler/REDCapRITS
From: DESCRIPTION
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://lifecycle.r-lib.org/articles/stages.html
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://redcap-tools.github.io/
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://tidyr.tidyverse.org/reference/pivot_wider.html
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
URL: https://www.tidyverse.org/
From: README.md
Status: 200
Message: OK
CRAN URL not in canonical form
Canonical CRAN.R-project.org URLs use https.
Found the following (possibly) invalid ORCID iD:
iD: 0000-0002-7559-1154 (from: DESCRIPTION)
0 errors ✔ | 0 warnings ✔ | 6 notes ✖
Updated package version

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inst/WORDLIST
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@ -13,7 +13,6 @@ README
REDCap
REDCapR
REDCapRITS
SpectrumHealthResearch
al
api
da
@ -33,6 +32,7 @@ md
nad
og
param
pegeler
perl
redcapcast
stRoke

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test-data/test_splitr/debug.r
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# Installing the latest REDCapRITS from GitHub ------------------------------
#devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@s3methods")
devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@longitudinal-data")
#devtools::install_github("pegeler/REDCapRITS/R@s3methods")
#devtools::install_github("pegeler/REDCapRITS/R@longitudinal-data")
# Debugging reading in longitudinal datasets ------------------------------