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CRAN-SUBMISSION
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CRAN-SUBMISSION
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Version: 23.12.1
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Date: 2023-12-20 11:25:34 UTC
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SHA: 620612f341f34cf92a1c24e2118a635b75273880
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@ -14,7 +14,7 @@ experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](h
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REDCap Castellated data handling when using repeated instruments.
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REDCap Castellated data handling when using repeated instruments.
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This package is a fork of [SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS). The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main `REDCap_split` function.
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This package is a fork of [pegeler/REDCapRITS](https://github.com/pegeler/REDCapRITS). The REDCapRITS represents great and extensive work to handle castellated REDCap data in different programming languages. This fork is purely minded on R usage and includes a few implementations of the main `REDCap_split` function.
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The main goal for this project was to allow for a "minimal data" approach by allowing to filter records, instruments and variables in the export to only download data needed. I think this approach is desireable for handling sensitive, clinical data. No similar functionality is available from similar tools (like `REDCapR` or `REDCapTidieR`). Please refer to [REDCap-Tools](https://redcap-tools.github.io/) for other great tools.
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The main goal for this project was to allow for a "minimal data" approach by allowing to filter records, instruments and variables in the export to only download data needed. I think this approach is desireable for handling sensitive, clinical data. No similar functionality is available from similar tools (like `REDCapR` or `REDCapTidieR`). Please refer to [REDCap-Tools](https://redcap-tools.github.io/) for other great tools.
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@ -36,6 +36,12 @@ The plan with this package is to be bundled with a Handbook on working with REDC
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## Installation
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## Installation
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The package is available on CRAN. Install the latest version:
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```
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install.packages("REDCapCAST")
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```
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Install the latest version directly from GitHub:
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Install the latest version directly from GitHub:
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```
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```
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cran-comments.md
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cran-comments.md
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For a CRAN submission we recommend that you fix all NOTEs, WARNINGs and ERRORs.
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── R CMD check results ─────────────────────────────────── REDCapCAST 23.12.1 ────
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## Test environments
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Duration: 22.2s
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- R-hub windows-x86_64-devel (r-devel)
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- R-hub ubuntu-gcc-release (r-release)
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- R-hub fedora-clang-devel (r-devel)
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## R CMD check results
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0 errors ✔ | 0 warnings ✔ | 0 notes ✔
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❯ On windows-x86_64-devel (r-devel)
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checking CRAN incoming feasibility ... [15s] NOTE
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Maintainer: 'Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>'
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Found the following (possibly) invalid URLs:
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URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
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From: README.md
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Status: 200
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Message: OK
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❯ On windows-x86_64-devel (r-devel)
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R CMD check succeeded
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checking for non-standard things in the check directory ... NOTE
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❯ On windows-x86_64-devel (r-devel)
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checking for detritus in the temp directory ... NOTE
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Found the following files/directories:
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'lastMiKTeXException'
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❯ On ubuntu-gcc-release (r-release)
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Updated package version
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checking CRAN incoming feasibility ... [8s/35s] NOTE
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Maintainer: ‘Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>’
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Found the following (possibly) invalid URLs:
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URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
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From: README.md
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Status: 200
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Message: OK
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❯ On ubuntu-gcc-release (r-release), fedora-clang-devel (r-devel)
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checking HTML version of manual ... NOTE
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Skipping checking HTML validation: no command 'tidy' found
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❯ On fedora-clang-devel (r-devel)
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checking CRAN incoming feasibility ... [9s/44s] NOTE
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Maintainer: ‘Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>’
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Found the following (possibly) invalid URLs:
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URL: https://agdamsbo.github.io/REDCapCAST/
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From: DESCRIPTION
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://app.codecov.io/gh/agdamsbo/REDCapCAST?branch=master
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://doi.org/10.5281/zenodo.8013984
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/OuhscBbmc/REDCapR
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/SpectrumHealthResearch/REDCapRITS (moved to https://github.com/pegeler/REDCapRITS)
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/agdamsbo/REDCapCAST
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From: DESCRIPTION
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README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/agdamsbo/REDCapCAST/actions/workflows/R-CMD-check.yaml
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/agdamsbo/REDCapCAST/actions/workflows/pages/pages-build-deployment
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/agdamsbo/REDCapCAST/issues
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From: DESCRIPTION
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://github.com/pegeler/REDCapRITS
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From: DESCRIPTION
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://lifecycle.r-lib.org/articles/stages.html
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://redcap-tools.github.io/
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://tidyr.tidyverse.org/reference/pivot_wider.html
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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URL: https://www.tidyverse.org/
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From: README.md
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Status: 200
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Message: OK
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CRAN URL not in canonical form
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Canonical CRAN.R-project.org URLs use https.
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Found the following (possibly) invalid ORCID iD:
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iD: 0000-0002-7559-1154 (from: DESCRIPTION)
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0 errors ✔ | 0 warnings ✔ | 6 notes ✖
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@ -13,7 +13,6 @@ README
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REDCap
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REDCap
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REDCapR
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REDCapR
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REDCapRITS
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REDCapRITS
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SpectrumHealthResearch
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al
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al
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api
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api
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da
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da
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nad
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nad
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og
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og
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param
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param
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pegeler
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perl
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perl
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redcapcast
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redcapcast
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stRoke
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stRoke
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# Installing the latest REDCapRITS from GitHub ------------------------------
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# Installing the latest REDCapRITS from GitHub ------------------------------
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#devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@s3methods")
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#devtools::install_github("pegeler/REDCapRITS/R@s3methods")
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devtools::install_github("SpectrumHealthResearch/REDCapRITS/R@longitudinal-data")
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#devtools::install_github("pegeler/REDCapRITS/R@longitudinal-data")
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# Debugging reading in longitudinal datasets ------------------------------
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# Debugging reading in longitudinal datasets ------------------------------
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