diff --git a/404.html b/404.html
index 834cf34..631ac08 100644
--- a/404.html
+++ b/404.html
@@ -17,7 +17,6 @@
 <script src="https://agdamsbo.github.io/REDCapCAST/deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="https://agdamsbo.github.io/REDCapCAST/deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet">
 <link href="https://agdamsbo.github.io/REDCapCAST/deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet">
 <script src="https://agdamsbo.github.io/REDCapCAST/deps/headroom-0.11.0/headroom.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/search-1.0.0/fuse.min.js"></script><script src="https://agdamsbo.github.io/REDCapCAST/deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="https://agdamsbo.github.io/REDCapCAST/pkgdown.js"></script><meta property="og:title" content="Page not found (404)">
-<meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png">
 </head>
 <body>
     <a href="https://agdamsbo.github.io/REDCapCAST/#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -27,7 +26,7 @@
 
     <a class="navbar-brand me-2" href="https://agdamsbo.github.io/REDCapCAST/index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -60,7 +59,8 @@
 </nav><div class="container template-title-body">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="https://agdamsbo.github.io/REDCapCAST/logo.png" class="logo" alt=""><h1>Page not found (404)</h1>
+
+      <h1>Page not found (404)</h1>
 
     </div>
 
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index daf1fb8..29e7329 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Contributor Covenant Code of Conduct"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Contributor Covenant Code of Conduct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Contributor Covenant Code of Conduct"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-title-body">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="logo.png" class="logo" alt=""><h1>Contributor Covenant Code of Conduct</h1>
+
+      <h1>Contributor Covenant Code of Conduct</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/CODE_OF_CONDUCT.md" class="external-link"><code>CODE_OF_CONDUCT.md</code></a></small>
     </div>
 
diff --git a/LICENSE.html b/LICENSE.html
index 29be0fb..af988f0 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GNU General Public License • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="GNU General Public License"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>GNU General Public License • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="GNU General Public License"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-title-body">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="logo.png" class="logo" alt=""><h1>GNU General Public License</h1>
+
+      <h1>GNU General Public License</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
     </div>
 
diff --git a/articles/Database-creation.html b/articles/Database-creation.html
index f9fa27d..c39cd37 100644
--- a/articles/Database-creation.html
+++ b/articles/Database-creation.html
@@ -26,7 +26,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -63,7 +63,8 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Database-creation</h1>
+
+      <h1>Database-creation</h1>
             
       
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Database-creation.Rmd" class="external-link"><code>vignettes/Database-creation.Rmd</code></a></small>
@@ -73,9 +74,7 @@
     
     
 <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
-<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
-<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
 <div class="section level2">
 <h2 id="two-different-ways-to-create-a-data-base">Two different ways to create a data base<a class="anchor" aria-label="anchor" href="#two-different-ways-to-create-a-data-base"></a>
 </h2>
diff --git a/articles/REDCapCAST.html b/articles/REDCapCAST.html
index f1bc927..ee3d042 100644
--- a/articles/REDCapCAST.html
+++ b/articles/REDCapCAST.html
@@ -26,7 +26,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -63,7 +63,8 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>REDCapCAST</h1>
+
+      <h1>REDCapCAST</h1>
             
       
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/REDCapCAST.Rmd" class="external-link"><code>vignettes/REDCapCAST.Rmd</code></a></small>
@@ -73,9 +74,7 @@
     
     
 <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
-<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
-<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
 <p>This vignette covers the basics to get you started with the two basic
 features of REDCapCAST:</p>
 <ul>
@@ -100,8 +99,8 @@ version here</a> or launch it locally like this:</p>
 <p>To get you started, the easiest way possible, you can use the
 <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code> function (example below).</p>
 <p>You will need an API-key for your REDCap server, the uri/URL/address
-for the API connection (usually the adress used for accessing your
-institutions REDCap servar, with an appended “/api/”).</p>
+for the API connection (usually the address used for accessing your
+institutions REDCap server, with an appended “/api/”).</p>
 <p>This function includes a few convenience features to ease your
 further work.</p>
 <p>If your project uses repeating instruments possible as a longitudinal
diff --git a/articles/Shiny-app.html b/articles/Shiny-app.html
index 1c43f6d..4fc0cd2 100644
--- a/articles/Shiny-app.html
+++ b/articles/Shiny-app.html
@@ -26,7 +26,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -63,7 +63,8 @@
 
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Shiny-app</h1>
+
+      <h1>Shiny-app</h1>
             
       
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/vignettes/Shiny-app.Rmd" class="external-link"><code>vignettes/Shiny-app.Rmd</code></a></small>
@@ -82,8 +83,6 @@ and launch the app as follows:</p>
 <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>.</p>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
-<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
-<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span>
 <span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/REDCap_split.html">REDCap_split</a></span><span class="op">(</span></span>
 <span>    records <span class="op">=</span> <span class="va">redcapcast_data</span>,</span>
 <span>    metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>
diff --git a/articles/index.html b/articles/index.html
index 6191a28..d710dff 100644
--- a/articles/index.html
+++ b/articles/index.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Articles • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Articles"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Articles • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Articles"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-article-index">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Articles</h1>
+
+      <h1>Articles</h1>
     </div>
 
     <div class="section ">
diff --git a/authors.html b/authors.html
index d65c414..23d2943 100644
--- a/authors.html
+++ b/authors.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Authors and Citation • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Authors and Citation"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Authors and Citation • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="apple-touch-icon-60x60.png"><script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="Authors and Citation"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-citation-authors">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="logo.png" class="logo" alt=""><h1>Authors and Citation</h1>
+
+      <h1>Authors and Citation</h1>
     </div>
 
     <div class="section level2">
@@ -53,15 +54,15 @@
       <h2 id="citation">Citation</h2>
       <p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
 
-      <p>Damsbo A, Egeler P (2024).
+      <p>Damsbo A, Egeler P (2025).
 <em>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling</em>.
-R package version 24.12.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
+R package version 25.1.1, https://agdamsbo.github.io/REDCapCAST/, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
 </p>
       <pre>@Manual{,
   title = {REDCapCAST: REDCap Metadata Casting and Castellated Data Handling},
   author = {Andreas Gammelgaard Damsbo and Paul Egeler},
-  year = {2024},
-  note = {R package version 24.12.1, https://agdamsbo.github.io/REDCapCAST/},
+  year = {2025},
+  note = {R package version 25.1.1, https://agdamsbo.github.io/REDCapCAST/},
   url = {https://github.com/agdamsbo/REDCapCAST},
 }</pre>
     </div>
diff --git a/index.html b/index.html
index c4bbae1..2287df6 100644
--- a/index.html
+++ b/index.html
@@ -19,7 +19,6 @@
 <script src="deps/headroom-0.11.0/headroom.min.js"></script><script src="deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="deps/search-1.0.0/fuse.min.js"></script><script src="deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="REDCap Metadata Casting and Castellated Data Handling">
 <meta name="description" content="Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in REDCap. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
 <meta property="og:description" content="Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in REDCap. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of REDCapRITS by Paul Egeler. See &lt;https://github.com/pegeler/REDCapRITS&gt;. REDCap (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) &lt;doi:10.1016/j.jbi.2008.08.010&gt;; Harris et al (2019) &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
-<meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png">
 </head>
 <body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
@@ -29,7 +28,7 @@
 
     <a class="navbar-brand me-2" href="index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -64,10 +63,8 @@
   <main id="main" class="col-md-9">
 <!-- badges: end -->
 <div class="section level1">
-<div class="page-header">
-<img src="logo.png" class="logo" alt=""><h1 id="redcapcast-package-">REDCapCAST package <a class="anchor" aria-label="anchor" href="#redcapcast-package-"></a>
-</h1>
-</div>
+<div class="page-header"><h1 id="redcapcast-package-">REDCapCAST package <img src="reference/figures/logo.png" align="right"><a class="anchor" aria-label="anchor" href="#redcapcast-package-"></a>
+</h1></div>
 <p>Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in REDCap.</p>
 <p>This is implemented with</p>
 <ul>
diff --git a/news/index.html b/news/index.html
index 330037f..52de033 100644
--- a/news/index.html
+++ b/news/index.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Changelog"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Changelog • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Changelog"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,21 +33,25 @@
 </nav><div class="container template-news">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Changelog</h1>
+
+      <h1>Changelog</h1>
       <small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
     </div>
 
     <div class="section level2">
-<h2 class="pkg-version" data-toc-text="24.12.2" id="redcapcast-24122">REDCapCAST 24.12.2<a class="anchor" aria-label="anchor" href="#redcapcast-24122"></a></h2>
+<h2 class="pkg-version" data-toc-text="25.1.1" id="redcapcast-2511">REDCapCAST 25.1.1<a class="anchor" aria-label="anchor" href="#redcapcast-2511"></a></h2>
 <p>The newly introduced extension of <code><a href="https://forcats.tidyverse.org/reference/fct_drop.html" class="external-link">forcats::fct_drop()</a></code> has been corrected to work as intended as a method.</p>
+<p>Conversion of column names to <code>field_names</code> are aligning better with REDCap naming.</p>
+<p>Shorten variable names above 100 characters (REDCap criteria; note recommended variable name length is &lt;26)</p>
+<p>Fixed a params conflict in easy_redcap() when specifying raw_or_label.</p>
 </div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="24.12.1" id="redcapcast-24121">REDCapCAST 24.12.1<a class="anchor" aria-label="anchor" href="#redcapcast-24121"></a></h2><p class="text-muted">CRAN release: 2024-12-02</p>
 <p>This release attempts to solve problems hosting the shiny_cast app, while also implementing functions to preserve as much meta data as possible from the REDCap database when exporting data.</p>
 <p>The hosting on shinyapps.io has given a lot of trouble recently. Modified package structure a little around the <code><a href="../reference/shiny_cast.html">shiny_cast()</a></code>, to accommodate an alternative hosting approach with all package functions included in a script instead of requiring the package.</p>
-<ul><li><p>NEW: A new option to <code>raw_or_label</code> in <code>read_readcap_tables()</code> has been added: “both”. Get raw values with REDCap labels applied as labels. Use <code><a href="../reference/as_factor.html">as_factor()</a></code> to format factors with original labels and use the <code>gtsummary</code> package to easily get beautiful tables with original labels from REDCap. Use <code><a href="../reference/fct_drop.html">fct_drop()</a></code> to drop empty levels.</p></li>
+<ul><li><p>NEW: A new option to <code>raw_or_label</code> in <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> has been added: “both”. Get raw values with REDCap labels applied as labels. Use <code><a href="../reference/as_factor.html">as_factor()</a></code> to format factors with original labels and use the <code>gtsummary</code> package to easily get beautiful tables with original labels from REDCap. Use <code><a href="../reference/fct_drop.html">fct_drop()</a></code> to drop empty levels.</p></li>
 <li><p>NEW: fct_drop() has been added with an extension to <code><a href="https://forcats.tidyverse.org/reference/fct_drop.html" class="external-link">forcats::fct_drop()</a></code>, that works across data.frames. Use as <code><a href="../reference/fct_drop.html">fct_drop()</a></code>.</p></li>
-<li><p>CHANGE: the default data export method of <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code> has been changed to use the new labelled data export with <code>read_readcap_tables()</code>.</p></li>
+<li><p>CHANGE: the default data export method of <code><a href="../reference/easy_redcap.html">easy_redcap()</a></code> has been changed to use the new labelled data export with <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code>.</p></li>
 </ul></div>
     <div class="section level2">
 <h2 class="pkg-version" data-toc-text="24.11.3" id="redcapcast-24113">REDCapCAST 24.11.3<a class="anchor" aria-label="anchor" href="#redcapcast-24113"></a></h2>
@@ -179,7 +183,7 @@
 </div>
 <div class="section level4">
 <h4 id="functions-23-3-1">Functions:<a class="anchor" aria-label="anchor" href="#functions-23-3-1"></a></h4>
-<ul><li><p><code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> <strong>NEW</strong>: this function is mainly an implementation of the combined use of <code>REDCapR::readcap_read()</code> and <code><a href="../reference/REDCap_split.html">REDCap_split()</a></code> to maintain the focused nature of <code>REDCapR::readcap_read()</code>, to only download the specified data. Also implements tests of valid form names and event names. The usual fall-back solution was to get all data.</p></li>
+<ul><li><p><code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> <strong>NEW</strong>: this function is mainly an implementation of the combined use of <code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code> and <code><a href="../reference/REDCap_split.html">REDCap_split()</a></code> to maintain the focused nature of <code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code>, to only download the specified data. Also implements tests of valid form names and event names. The usual fall-back solution was to get all data.</p></li>
 <li><p><code><a href="../reference/redcap_wider.html">redcap_wider()</a></code> <strong>NEW</strong>: this function pivots the long data frames from <code><a href="../reference/read_redcap_tables.html">read_redcap_tables()</a></code> using <code><a href="https://tidyr.tidyverse.org/reference/pivot_wider.html" class="external-link">tidyr::pivot_wider()</a></code>.</p></li>
 <li><p><code><a href="../reference/focused_metadata.html">focused_metadata()</a></code> <strong>NEW</strong>: a hidden helper function to enable a focused data acquisition approach to handle only a subset of metadata corresponding to the focused dataset.</p></li>
 </ul></div>
diff --git a/pkgdown.yml b/pkgdown.yml
index 8356def..d3d37a4 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -5,7 +5,7 @@ articles:
   Database-creation: Database-creation.html
   REDCapCAST: REDCapCAST.html
   Shiny-app: Shiny-app.html
-last_built: 2024-12-19T20:23Z
+last_built: 2025-01-29T10:28Z
 urls:
   reference: https://agdamsbo.github.io/REDCapCAST/reference
   article: https://agdamsbo.github.io/REDCapCAST/articles
diff --git a/reference/REDCapCAST-package.html b/reference/REDCapCAST-package.html
index 0a55aae..8a03ddc 100644
--- a/reference/REDCapCAST-package.html
+++ b/reference/REDCapCAST-package.html
@@ -1,11 +1,9 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package"><meta name="description" content="
-Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package"><meta name="description" content="Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010
 ; Harris et al (2019) doi:10.1016/j.jbi.2019.103208
-)."><meta property="og:description" content="
-Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010
+)."><meta property="og:description" content="Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010
 ; Harris et al (2019) doi:10.1016/j.jbi.2019.103208
-)."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+)."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -13,7 +11,7 @@ Casting metadata for REDCap database creation and handling of castellated data u
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,14 +37,14 @@ Casting metadata for REDCap database creation and handling of castellated data u
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling</h1>
+
+      <h1>REDCapCAST: REDCap Metadata Casting and Castellated Data Handling</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCapCAST-package.R" class="external-link"><code>R/REDCapCAST-package.R</code></a></small>
       <div class="d-none name"><code>REDCapCAST-package.Rd</code></div>
     </div>
 
     <div class="ref-description section level2">
-    <p></p>
-<p>Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See <a href="https://github.com/pegeler/REDCapRITS" class="external-link">https://github.com/pegeler/REDCapRITS</a>. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <a href="https://doi.org/10.1016/j.jbi.2008.08.010" class="external-link">doi:10.1016/j.jbi.2008.08.010</a>
+    <p>Casting metadata for REDCap database creation and handling of castellated data using repeated instruments and longitudinal projects in 'REDCap'. Keeps a focused data export approach, by allowing to only export required data from the database. Also for casting new REDCap databases based on datasets from other sources. Originally forked from the R part of 'REDCapRITS' by Paul Egeler. See <a href="https://github.com/pegeler/REDCapRITS" class="external-link">https://github.com/pegeler/REDCapRITS</a>. 'REDCap' (Research Electronic Data Capture) is a secure, web-based software platform designed to support data capture for research studies, providing 1) an intuitive interface for validated data capture; 2) audit trails for tracking data manipulation and export procedures; 3) automated export procedures for seamless data downloads to common statistical packages; and 4) procedures for data integration and interoperability with external sources (Harris et al (2009) <a href="https://doi.org/10.1016/j.jbi.2008.08.010" class="external-link">doi:10.1016/j.jbi.2008.08.010</a>
 ; Harris et al (2019) <a href="https://doi.org/10.1016/j.jbi.2019.103208" class="external-link">doi:10.1016/j.jbi.2019.103208</a>
 ).</p>
     </div>
diff --git a/reference/REDCap_split.html b/reference/REDCap_split.html
index 3d032f3..ea4730e 100644
--- a/reference/REDCap_split.html
+++ b/reference/REDCap_split.html
@@ -3,7 +3,7 @@
 and child tables for each repeating instrument. Metadata
 is used to determine which fields should be included in each resultant table."><meta property="og:description" content="This will take output from a REDCap export and split it into a base table
 and child tables for each repeating instrument. Metadata
-is used to determine which fields should be included in each resultant table."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+is used to determine which fields should be included in each resultant table."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -11,7 +11,7 @@ is used to determine which fields should be included in each resultant table."><
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,7 +37,8 @@ is used to determine which fields should be included in each resultant table."><
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
+
+      <h1>Split REDCap repeating instruments table into multiple tables</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
       <div class="d-none name"><code>REDCap_split.Rd</code></div>
     </div>
diff --git a/reference/all_na.html b/reference/all_na.html
index 7654c35..487776c 100644
--- a/reference/all_na.html
+++ b/reference/all_na.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Check if vector is all NA — all_na • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Check if vector is all NA — all_na"><meta name="description" content="Check if vector is all NA"><meta property="og:description" content="Check if vector is all NA"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Check if vector is all NA — all_na • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Check if vector is all NA — all_na"><meta name="description" content="Check if vector is all NA"><meta property="og:description" content="Check if vector is all NA"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Check if vector is all NA</h1>
+
+      <h1>Check if vector is all NA</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>all_na.Rd</code></div>
     </div>
diff --git a/reference/apply_factor_labels.html b/reference/apply_factor_labels.html
index 8f2cddc..3af6512 100644
--- a/reference/apply_factor_labels.html
+++ b/reference/apply_factor_labels.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels"><meta name="description" content="Preserve all factor levels from REDCap data dictionary in data export"><meta property="og:description" content="Preserve all factor levels from REDCap data dictionary in data export"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels"><meta name="description" content="Preserve all factor levels from REDCap data dictionary in data export"><meta property="og:description" content="Preserve all factor levels from REDCap data dictionary in data export"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Preserve all factor levels from REDCap data dictionary in data export</h1>
+
+      <h1>Preserve all factor levels from REDCap data dictionary in data export</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
       <div class="d-none name"><code>apply_factor_labels.Rd</code></div>
     </div>
diff --git a/reference/apply_field_label.html b/reference/apply_field_label.html
index 57af935..bd33f35 100644
--- a/reference/apply_field_label.html
+++ b/reference/apply_field_label.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Apply REDCap filed labels to data frame — apply_field_label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Apply REDCap filed labels to data frame — apply_field_label"><meta name="description" content="Apply REDCap filed labels to data frame"><meta property="og:description" content="Apply REDCap filed labels to data frame"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Apply REDCap filed labels to data frame — apply_field_label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Apply REDCap filed labels to data frame — apply_field_label"><meta name="description" content="Apply REDCap filed labels to data frame"><meta property="og:description" content="Apply REDCap filed labels to data frame"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Apply REDCap filed labels to data frame</h1>
+
+      <h1>Apply REDCap filed labels to data frame</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
       <div class="d-none name"><code>apply_field_label.Rd</code></div>
     </div>
diff --git a/reference/as_factor.html b/reference/as_factor.html
index 206f48e..a846aae 100644
--- a/reference/as_factor.html
+++ b/reference/as_factor.html
@@ -3,7 +3,7 @@
 original attributes except for "class" after converting to factor to avoid
 ta loss in case of rich formatted and labelled data.'><meta property="og:description" content='This extends as_factor as well as as_factor, by appending
 original attributes except for "class" after converting to factor to avoid
-ta loss in case of rich formatted and labelled data.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+ta loss in case of rich formatted and labelled data.'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -11,7 +11,7 @@ ta loss in case of rich formatted and labelled data.'><meta property="og:image"
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,7 +37,8 @@ ta loss in case of rich formatted and labelled data.'><meta property="og:image"
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Convert labelled vectors to factors while preserving attributes</h1>
+
+      <h1>Convert labelled vectors to factors while preserving attributes</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>as_factor.Rd</code></div>
     </div>
diff --git a/reference/case_match_regex_list.html b/reference/case_match_regex_list.html
index 2c76882..7f5b207 100644
--- a/reference/case_match_regex_list.html
+++ b/reference/case_match_regex_list.html
@@ -7,7 +7,7 @@ naming."><meta property="og:description" content="Mimics case_when for list of r
 validation generation from name vector. Like case_when, the matches are in
 order of priority.
 Primarily used in REDCapCAST to do data type coding from systematic variable
-naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+naming."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -15,7 +15,7 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -41,7 +41,8 @@ naming."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAS
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>List-base regex case_when</h1>
+
+      <h1>List-base regex case_when</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>case_match_regex_list.Rd</code></div>
     </div>
diff --git a/reference/cast_data_overview.html b/reference/cast_data_overview.html
index 50ea081..552c981 100644
--- a/reference/cast_data_overview.html
+++ b/reference/cast_data_overview.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Overview of REDCapCAST data for shiny — cast_data_overview • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Overview of REDCapCAST data for shiny — cast_data_overview"><meta name="description" content="Overview of REDCapCAST data for shiny"><meta property="og:description" content="Overview of REDCapCAST data for shiny"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Overview of REDCapCAST data for shiny — cast_data_overview • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Overview of REDCapCAST data for shiny — cast_data_overview"><meta name="description" content="Overview of REDCapCAST data for shiny"><meta property="og:description" content="Overview of REDCapCAST data for shiny"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Overview of REDCapCAST data for shiny</h1>
+
+      <h1>Overview of REDCapCAST data for shiny</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>cast_data_overview.Rd</code></div>
     </div>
diff --git a/reference/cast_meta_overview.html b/reference/cast_meta_overview.html
index 2f60ae3..9a6ce12 100644
--- a/reference/cast_meta_overview.html
+++ b/reference/cast_meta_overview.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Overview of REDCapCAST meta data for shiny — cast_meta_overview • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Overview of REDCapCAST meta data for shiny — cast_meta_overview"><meta name="description" content="Overview of REDCapCAST meta data for shiny"><meta property="og:description" content="Overview of REDCapCAST meta data for shiny"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Overview of REDCapCAST meta data for shiny — cast_meta_overview • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Overview of REDCapCAST meta data for shiny — cast_meta_overview"><meta name="description" content="Overview of REDCapCAST meta data for shiny"><meta property="og:description" content="Overview of REDCapCAST meta data for shiny"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Overview of REDCapCAST meta data for shiny</h1>
+
+      <h1>Overview of REDCapCAST meta data for shiny</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>cast_meta_overview.Rd</code></div>
     </div>
diff --git a/reference/char2choice.html b/reference/char2choice.html
index ad8497d..4772da9 100644
--- a/reference/char2choice.html
+++ b/reference/char2choice.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple function to generate REDCap choices from character vector — char2choice • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple function to generate REDCap choices from character vector — char2choice"><meta name="description" content="Simple function to generate REDCap choices from character vector"><meta property="og:description" content="Simple function to generate REDCap choices from character vector"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple function to generate REDCap choices from character vector — char2choice • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple function to generate REDCap choices from character vector — char2choice"><meta name="description" content="Simple function to generate REDCap choices from character vector"><meta property="og:description" content="Simple function to generate REDCap choices from character vector"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap choices from character vector</h1>
+
+      <h1>Simple function to generate REDCap choices from character vector</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>char2choice.Rd</code></div>
     </div>
diff --git a/reference/char2cond.html b/reference/char2cond.html
index eb252bc..9e97c2e 100644
--- a/reference/char2cond.html
+++ b/reference/char2cond.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple function to generate REDCap branching logic from character vector — char2cond • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple function to generate REDCap branching logic from character vector — char2cond"><meta name="description" content="Simple function to generate REDCap branching logic from character vector"><meta property="og:description" content="Simple function to generate REDCap branching logic from character vector"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple function to generate REDCap branching logic from character vector — char2cond • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple function to generate REDCap branching logic from character vector — char2cond"><meta name="description" content="Simple function to generate REDCap branching logic from character vector"><meta property="og:description" content="Simple function to generate REDCap branching logic from character vector"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Simple function to generate REDCap branching logic from character vector</h1>
+
+      <h1>Simple function to generate REDCap branching logic from character vector</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>char2cond.Rd</code></div>
     </div>
diff --git a/reference/clean_field_label.html b/reference/clean_field_label.html
index 40eee60..33e2113 100644
--- a/reference/clean_field_label.html
+++ b/reference/clean_field_label.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Very simple function to remove rich text formatting from field label and save the first paragraph ('&lt;p&gt;...&lt;/p&gt;'). — clean_field_label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Very simple function to remove rich text formatting from field label and save the first paragraph ('&lt;p&gt;...&lt;/p&gt;'). — clean_field_label"><meta name="description" content="Very simple function to remove rich text formatting from field label
 and save the first paragraph ('&amp;lt;p&amp;gt;...&amp;lt;/p&amp;gt;')."><meta property="og:description" content="Very simple function to remove rich text formatting from field label
-and save the first paragraph ('&amp;lt;p&amp;gt;...&amp;lt;/p&amp;gt;')."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+and save the first paragraph ('&amp;lt;p&amp;gt;...&amp;lt;/p&amp;gt;')."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ and save the first paragraph ('&amp;lt;p&amp;gt;...&amp;lt;/p&amp;gt;')."><meta
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ and save the first paragraph ('&amp;lt;p&amp;gt;...&amp;lt;/p&amp;gt;')."><meta
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Very simple function to remove rich text formatting from field label and save the first paragraph ('&lt;p&gt;...&lt;/p&gt;').</h1>
+
+      <h1>Very simple function to remove rich text formatting from field label and save the first paragraph ('&lt;p&gt;...&lt;/p&gt;').</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
       <div class="d-none name"><code>clean_field_label.Rd</code></div>
     </div>
diff --git a/reference/clean_redcap_name.html b/reference/clean_redcap_name.html
index aa7e44c..1758d1b 100644
--- a/reference/clean_redcap_name.html
+++ b/reference/clean_redcap_name.html
@@ -3,7 +3,7 @@
 substitutes spaces for underscores and converts to lower case.
 Trying to make up for different naming conventions."><meta property="og:description" content="Stepwise removal on non-alphanumeric characters, trailing white space,
 substitutes spaces for underscores and converts to lower case.
-Trying to make up for different naming conventions."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+Trying to make up for different naming conventions."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -11,7 +11,7 @@ Trying to make up for different naming conventions."><meta property="og:image" c
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,7 +37,8 @@ Trying to make up for different naming conventions."><meta property="og:image" c
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>clean_redcap_name</h1>
+
+      <h1>clean_redcap_name</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>clean_redcap_name.Rd</code></div>
     </div>
@@ -66,6 +67,12 @@ Trying to make up for different naming conventions.</p>
     <p>vector or data frame, same format as input</p>
     </div>
 
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"Research!, ne:ws? and c;l-.ls"</span> <span class="op">|&gt;</span> <span class="fu">clean_redcap_name</span><span class="op">(</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "research_news_and_clls"</span>
+</code></pre></div>
+    </div>
   </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside></div>
 
diff --git a/reference/compact_vec.html b/reference/compact_vec.html
index 21501bf..5c6be4d 100644
--- a/reference/compact_vec.html
+++ b/reference/compact_vec.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Compacting a vector of any length with or without names — compact_vec • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Compacting a vector of any length with or without names — compact_vec"><meta name="description" content="Compacting a vector of any length with or without names"><meta property="og:description" content="Compacting a vector of any length with or without names"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Compacting a vector of any length with or without names — compact_vec • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Compacting a vector of any length with or without names — compact_vec"><meta name="description" content="Compacting a vector of any length with or without names"><meta property="og:description" content="Compacting a vector of any length with or without names"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Compacting a vector of any length with or without names</h1>
+
+      <h1>Compacting a vector of any length with or without names</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>compact_vec.Rd</code></div>
     </div>
diff --git a/reference/create_html_table.html b/reference/create_html_table.html
index 0a89aec..0d03a59 100644
--- a/reference/create_html_table.html
+++ b/reference/create_html_table.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create two-column HTML table for data piping in REDCap instruments — create_html_table • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create two-column HTML table for data piping in REDCap instruments — create_html_table"><meta name="description" content="Create two-column HTML table for data piping in REDCap instruments"><meta property="og:description" content="Create two-column HTML table for data piping in REDCap instruments"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Create two-column HTML table for data piping in REDCap instruments — create_html_table • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Create two-column HTML table for data piping in REDCap instruments — create_html_table"><meta name="description" content="Create two-column HTML table for data piping in REDCap instruments"><meta property="og:description" content="Create two-column HTML table for data piping in REDCap instruments"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Create two-column HTML table for data piping in REDCap instruments</h1>
+
+      <h1>Create two-column HTML table for data piping in REDCap instruments</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
       <div class="d-none name"><code>create_html_table.Rd</code></div>
     </div>
diff --git a/reference/create_instrument_meta.html b/reference/create_instrument_meta.html
index 0786b4d..df9364b 100644
--- a/reference/create_instrument_meta.html
+++ b/reference/create_instrument_meta.html
@@ -5,7 +5,7 @@ function can be used to create (an) instrument(s) to add to a project in
 production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
 initial design phase. If you want to later add new instruments, this
 function can be used to create (an) instrument(s) to add to a project in
-production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+production."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -13,7 +13,7 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,7 +39,8 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>DEPRICATED Create zips file with necessary content based on data set</h1>
+
+      <h1>DEPRICATED Create zips file with necessary content based on data set</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
       <div class="d-none name"><code>create_instrument_meta.Rd</code></div>
     </div>
diff --git a/reference/cut_string_length.html b/reference/cut_string_length.html
new file mode 100644
index 0000000..0b035f1
--- /dev/null
+++ b/reference/cut_string_length.html
@@ -0,0 +1,93 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Cut string to desired length — cut_string_length • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Cut string to desired length — cut_string_length"><meta name="description" content="Cut string to desired length"><meta property="og:description" content="Cut string to desired length"></head><body>
+    <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
+
+
+    <nav class="navbar navbar-expand-lg fixed-top bg-light" data-bs-theme="light" aria-label="Site navigation"><div class="container">
+
+    <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
+
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
+
+
+    <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
+      <span class="navbar-toggler-icon"></span>
+    </button>
+
+    <div id="navbar" class="collapse navbar-collapse ms-3">
+      <ul class="navbar-nav me-auto"><li class="nav-item"><a class="nav-link" href="../articles/REDCapCAST.html">Get started</a></li>
+<li class="active nav-item"><a class="nav-link" href="../reference/index.html">Reference</a></li>
+<li class="nav-item dropdown">
+  <button class="nav-link dropdown-toggle" type="button" id="dropdown-articles" data-bs-toggle="dropdown" aria-expanded="false" aria-haspopup="true">Articles</button>
+  <ul class="dropdown-menu" aria-labelledby="dropdown-articles"><li><a class="dropdown-item" href="../articles/Database-creation.html">Database-creation</a></li>
+    <li><a class="dropdown-item" href="../articles/Shiny-app.html">Shiny-app</a></li>
+  </ul></li>
+<li class="nav-item"><a class="nav-link" href="../news/index.html">Changelog</a></li>
+      </ul><ul class="navbar-nav"><li class="nav-item"><form class="form-inline" role="search">
+ <input class="form-control" type="search" name="search-input" id="search-input" autocomplete="off" aria-label="Search site" placeholder="Search for" data-search-index="../search.json"></form></li>
+<li class="nav-item"><a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="GitHub"><span class="fa fab fa-github fa-lg"></span></a></li>
+      </ul></div>
+
+
+  </div>
+</nav><div class="container template-reference-topic">
+<div class="row">
+  <main id="main" class="col-md-9"><div class="page-header">
+
+      <h1>Cut string to desired length</h1>
+      <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
+      <div class="d-none name"><code>cut_string_length.Rd</code></div>
+    </div>
+
+    <div class="ref-description section level2">
+    <p>Cut string to desired length</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">cut_string_length</span><span class="op">(</span><span class="va">data</span>, l <span class="op">=</span> <span class="fl">100</span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div class="section level2">
+    <h2 id="arguments">Arguments<a class="anchor" aria-label="anchor" href="#arguments"></a></h2>
+
+
+<dl><dt id="arg-data">data<a class="anchor" aria-label="anchor" href="#arg-data"></a></dt>
+<dd><p>data</p></dd>
+
+
+<dt id="arg-l">l<a class="anchor" aria-label="anchor" href="#arg-l"></a></dt>
+<dd><p>length</p></dd>
+
+</dl></div>
+    <div class="section level2">
+    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
+    <p>character string of length l</p>
+    </div>
+
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="st">"length"</span> <span class="op">|&gt;</span> <span class="fu">cut_string_length</span><span class="op">(</span>l<span class="op">=</span><span class="fl">3</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> [1] "len"</span>
+</code></pre></div>
+    </div>
+  </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
+    </nav></aside></div>
+
+
+    <footer><div class="pkgdown-footer-left">
+  <p>Developed by Andreas Gammelgaard Damsbo, Paul Egeler.</p>
+</div>
+
+<div class="pkgdown-footer-right">
+  <p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.1.1.</p>
+</div>
+
+    </footer></div>
+
+
+
+
+
+  </body></html>
+
diff --git a/reference/d2w.html b/reference/d2w.html
index 8305809..3bb442d 100644
--- a/reference/d2w.html
+++ b/reference/d2w.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert single digits to words — d2w • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convert single digits to words — d2w"><meta name="description" content="Convert single digits to words"><meta property="og:description" content="Convert single digits to words"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert single digits to words — d2w • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convert single digits to words — d2w"><meta name="description" content="Convert single digits to words"><meta property="og:description" content="Convert single digits to words"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Convert single digits to words</h1>
+
+      <h1>Convert single digits to words</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>d2w.Rd</code></div>
     </div>
diff --git a/reference/doc2dd.html b/reference/doc2dd.html
index 138294d..ec93818 100644
--- a/reference/doc2dd.html
+++ b/reference/doc2dd.html
@@ -9,7 +9,7 @@ Allows defining a database in a text document (see provided template) for
 an easier to use data base creation. This approach allows easier
 collaboration when defining the database. The generic case is a data frame
 with variable names as values in a column. This is a format like the REDCap
-data dictionary, but gives a few options for formatting."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+data dictionary, but gives a few options for formatting."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -17,7 +17,7 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -43,7 +43,8 @@ data dictionary, but gives a few options for formatting."><meta property="og:ima
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
+
+      <h1>Doc table to data dictionary - EARLY, DOCS MISSING</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>doc2dd.Rd</code></div>
     </div>
diff --git a/reference/ds2dd.html b/reference/ds2dd.html
index e44d67c..2dab209 100644
--- a/reference/ds2dd.html
+++ b/reference/ds2dd.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>(DEPRECATED) Data set to data dictionary function — ds2dd • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="(DEPRECATED) Data set to data dictionary function — ds2dd"><meta name="description" content="Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
 for a more advanced function."><meta property="og:description" content="Creates a very basic data dictionary skeleton. Please see `ds2dd_detailed()`
-for a more advanced function."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+for a more advanced function."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ for a more advanced function."><meta property="og:image" content="https://agdams
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ for a more advanced function."><meta property="og:image" content="https://agdams
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>(DEPRECATED) Data set to data dictionary function</h1>
+
+      <h1>(DEPRECATED) Data set to data dictionary function</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>ds2dd.Rd</code></div>
     </div>
diff --git a/reference/ds2dd_detailed.html b/reference/ds2dd_detailed.html
index bfd304b..f89e9ce 100644
--- a/reference/ds2dd_detailed.html
+++ b/reference/ds2dd_detailed.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extract data from stata file for data dictionary — ds2dd_detailed • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extract data from stata file for data dictionary — ds2dd_detailed"><meta name="description" content="Extract data from stata file for data dictionary"><meta property="og:description" content="Extract data from stata file for data dictionary"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extract data from stata file for data dictionary — ds2dd_detailed • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extract data from stata file for data dictionary — ds2dd_detailed"><meta name="description" content="Extract data from stata file for data dictionary"><meta property="og:description" content="Extract data from stata file for data dictionary"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Extract data from stata file for data dictionary</h1>
+
+      <h1>Extract data from stata file for data dictionary</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>ds2dd_detailed.Rd</code></div>
     </div>
@@ -164,8 +165,8 @@ Please, do always inspect the data dictionary before upload.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 15 more rows</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 16 more variables: cohabitation &lt;chr&gt;, hypertension &lt;chr&gt;, diabetes &lt;chr&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   region &lt;chr&gt;, baseline_data_start_complete &lt;chr&gt;, mrs_assessed &lt;chr&gt;,</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   mrs_date &lt;date&gt;, mrs_score &lt;dbl&gt;, mrs_complete &lt;chr&gt;, con_mrs &lt;fct&gt;,</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   con_calc &lt;fct&gt;, consensus_complete &lt;chr&gt;, event_datetime &lt;dttm&gt;,</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   mrs_date &lt;date&gt;, mrs_score &lt;dbl&gt;, mrs_complete &lt;chr&gt;, con_mrs &lt;dbl&gt;,</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   con_calc &lt;dbl&gt;, consensus_complete &lt;chr&gt;, event_datetime &lt;dttm&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   event_age &lt;dbl&gt;, event_type &lt;chr&gt;, new_event_complete &lt;chr&gt;</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
@@ -197,30 +198,30 @@ Please, do always inspect the data dictionary before upload.</p>
 <span class="r-in"><span><span class="va">iris</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>    record_id sepal.length sepal.width petal.length petal.width species</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>  </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1          5.1         3.5          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2          4.9         3            1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3          4.7         3.2          1.3         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4          4.6         3.1          1.5         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5          5           3.6          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6          5.4         3.9          1.7         0.4 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7          4.6         3.4          1.4         0.3 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8          5           3.4          1.5         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9          4.4         2.9          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10          4.9         3.1          1.5         0.1 setosa </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>    record_id sepallength sepalwidth petallength petalwidth species</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1         5.1        3.5         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2         4.9        3           1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3         4.7        3.2         1.3        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4         4.6        3.1         1.5        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5         5          3.6         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6         5.4        3.9         1.7        0.4       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7         4.6        3.4         1.4        0.3       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8         5          3.4         1.5        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9         4.4        2.9         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10         4.9        3.1         1.5        0.1       1</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 140 more rows</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name   form_name section_header field_type field_label </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id    data      <span style="color: #BB0000;">NA</span>             text       record_id   </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length data      <span style="color: #BB0000;">NA</span>             text       Sepal.Length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width  data      <span style="color: #BB0000;">NA</span>             text       Sepal.Width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length data      <span style="color: #BB0000;">NA</span>             text       Petal.Length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width  data      <span style="color: #BB0000;">NA</span>             text       Petal.Width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species      data      <span style="color: #BB0000;">NA</span>             radio      Species     </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name  form_name section_header field_type field_label </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id   data      <span style="color: #BB0000;">NA</span>             text       record_id   </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepallength data      <span style="color: #BB0000;">NA</span>             text       Sepal.Length</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepalwidth  data      <span style="color: #BB0000;">NA</span>             text       Sepal.Width </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petallength data      <span style="color: #BB0000;">NA</span>             text       Petal.Length</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petalwidth  data      <span style="color: #BB0000;">NA</span>             text       Petal.Width </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species     data      <span style="color: #BB0000;">NA</span>             radio      Species     </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
@@ -239,35 +240,35 @@ Please, do always inspect the data dictionary before upload.</p>
 <span class="r-in"><span>  <span class="op">)</span> <span class="op">|&gt;</span></span></span>
 <span class="r-in"><span>  <span class="fu">purrr</span><span class="fu">::</span><span class="fu"><a href="https://purrr.tidyverse.org/reference/pluck.html" class="external-link">pluck</a></span><span class="op">(</span><span class="st">"meta"</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name   form_name section_header field_type field_label </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id    b         <span style="color: #BB0000;">NA</span>             text       record_id   </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length c         <span style="color: #BB0000;">NA</span>             text       Sepal.Length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width  b         <span style="color: #BB0000;">NA</span>             text       Sepal.Width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length c         <span style="color: #BB0000;">NA</span>             text       Petal.Length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width  b         <span style="color: #BB0000;">NA</span>             text       Petal.Width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species      c         <span style="color: #BB0000;">NA</span>             radio      Species     </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name  form_name section_header field_type field_label </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id   b         <span style="color: #BB0000;">NA</span>             text       record_id   </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepallength c         <span style="color: #BB0000;">NA</span>             text       Sepal.Length</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepalwidth  b         <span style="color: #BB0000;">NA</span>             text       Sepal.Width </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petallength c         <span style="color: #BB0000;">NA</span>             text       Petal.Length</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petalwidth  b         <span style="color: #BB0000;">NA</span>             text       Petal.Width </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species     c         <span style="color: #BB0000;">NA</span>             radio      Species     </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   branching_logic &lt;lgl&gt;, required_field &lt;lgl&gt;, custom_alignment &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   question_number &lt;lgl&gt;, matrix_group_name &lt;lgl&gt;, matrix_ranking &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   field_annotation &lt;lgl&gt;</span></span>
-<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span> <span class="fu"><a href="numchar2fct.html">numchar2fct</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>add.auto.id <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 32 × 12</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    record_id   mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;int&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1  21       6  160    110  3.9   2.62  16.5     0     1     4     4</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2  21       6  160    110  3.9   2.88  17.0     0     1     4     4</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3  22.8     4  108     93  3.85  2.32  18.6     1     1     4     1</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6  18.1     6  225    105  2.76  3.46  20.2     1     0     3     1</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7  14.3     8  360    245  3.21  3.57  15.8     0     0     3     4</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8  24.4     4  147.    62  3.69  3.19  20       1     0     4     2</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9  22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10  19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1  21       2  160    110  3.9   2.62  16.5     1     2     2     4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2  21       2  160    110  3.9   2.88  17.0     1     2     2     4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3  22.8     1  108     93  3.85  2.32  18.6     2     2     2     1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4  21.4     2  258    110  3.08  3.22  19.4     2     1     1     1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5  18.7     3  360    175  3.15  3.44  17.0     1     1     1     2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6  18.1     2  225    105  2.76  3.46  20.2     2     1     1     1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7  14.3     3  360    245  3.21  3.57  15.8     1     1     1     4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8  24.4     1  147.    62  3.69  3.19  20       2     1     2     2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9  22.8     1  141.    95  3.92  3.15  22.9     2     1     2     2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10  19.2     2  168.   123  3.92  3.44  18.3     2     1     2     4</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 22 more rows</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
@@ -276,17 +277,17 @@ Please, do always inspect the data dictionary before upload.</p>
 <span class="r-out co"><span class="r-pr">#&gt;</span>    <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span> record_id  data      <span style="color: #BB0000;">NA</span>             text       record_id  </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span> mpg        data      <span style="color: #BB0000;">NA</span>             text       mpg        </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> cyl        data      <span style="color: #BB0000;">NA</span>             text       cyl        </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span> cyl        data      <span style="color: #BB0000;">NA</span>             radio      cyl        </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span> disp       data      <span style="color: #BB0000;">NA</span>             text       disp       </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span> hp         data      <span style="color: #BB0000;">NA</span>             text       hp         </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span> drat       data      <span style="color: #BB0000;">NA</span>             text       drat       </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span> wt         data      <span style="color: #BB0000;">NA</span>             text       wt         </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span> qsec       data      <span style="color: #BB0000;">NA</span>             text       qsec       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> vs         data      <span style="color: #BB0000;">NA</span>             text       vs         </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> am         data      <span style="color: #BB0000;">NA</span>             text       am         </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> gear       data      <span style="color: #BB0000;">NA</span>             text       gear       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> carb       data      <span style="color: #BB0000;">NA</span>             text       carb       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span> vs         data      <span style="color: #BB0000;">NA</span>             radio      vs         </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span> am         data      <span style="color: #BB0000;">NA</span>             radio      am         </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">11</span> gear       data      <span style="color: #BB0000;">NA</span>             radio      gear       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">12</span> carb       data      <span style="color: #BB0000;">NA</span>             radio      carb       </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   branching_logic &lt;lgl&gt;, required_field &lt;lgl&gt;, custom_alignment &lt;lgl&gt;,</span></span>
@@ -305,31 +306,31 @@ Please, do always inspect the data dictionary before upload.</p>
 <span class="r-in"><span><span class="va">data</span> <span class="op">|&gt;</span> <span class="fu">ds2dd_detailed</span><span class="op">(</span>form.sep <span class="op">=</span> <span class="st">"__"</span><span class="op">)</span></span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $data</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 150 × 6</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>    record_id sepal.length sepal.width petal.length petal.width species</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span>  </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1          5.1         3.5          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2          4.9         3            1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3          4.7         3.2          1.3         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4          4.6         3.1          1.5         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5          5           3.6          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6          5.4         3.9          1.7         0.4 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7          4.6         3.4          1.4         0.3 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8          5           3.4          1.5         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9          4.4         2.9          1.4         0.2 setosa </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10          4.9         3.1          1.5         0.1 setosa </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>    record_id sepallength sepalwidth petallength petalwidth species</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;int&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>         1         5.1        3.5         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>         2         4.9        3           1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>         3         4.7        3.2         1.3        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>         4         4.6        3.1         1.5        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>         5         5          3.6         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>         6         5.4        3.9         1.7        0.4       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>         7         4.6        3.4         1.4        0.3       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>         8         5          3.4         1.5        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>         9         4.4        2.9         1.4        0.2       1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>        10         4.9        3.1         1.5        0.1       1</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 140 more rows</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> </span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> $meta</span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 6 × 18</span></span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name   form_name section_header field_type field_label </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>        <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id    b         <span style="color: #BB0000;">NA</span>             text       record_id   </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepal.length a         <span style="color: #BB0000;">NA</span>             text       sepal.length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepal.width  b         <span style="color: #BB0000;">NA</span>             text       sepal.width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petal.length a         <span style="color: #BB0000;">NA</span>             text       petal.length</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petal.width  b         <span style="color: #BB0000;">NA</span>             text       petal.width </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species      a         <span style="color: #BB0000;">NA</span>             radio      species     </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;chr&gt;, field_note &lt;lgl&gt;,</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   field_name  form_name section_header field_type field_label</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>   <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>       <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>     <span style="color: #949494; font-style: italic;">&lt;lgl&gt;</span>          <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      <span style="color: #949494; font-style: italic;">&lt;chr&gt;</span>      </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">1</span> record_id   b         <span style="color: #BB0000;">NA</span>             text       record_id  </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">2</span> sepallength a         <span style="color: #BB0000;">NA</span>             text       sepallength</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">3</span> sepalwidth  b         <span style="color: #BB0000;">NA</span>             text       sepalwidth </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">4</span> petallength a         <span style="color: #BB0000;">NA</span>             text       petallength</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">5</span> petalwidth  b         <span style="color: #BB0000;">NA</span>             text       petalwidth </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">6</span> species     a         <span style="color: #BB0000;">NA</span>             text       species    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 13 more variables: select_choices_or_calculations &lt;lgl&gt;, field_note &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_type_or_show_slider_number &lt;chr&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   text_validation_min &lt;lgl&gt;, text_validation_max &lt;lgl&gt;, identifier &lt;lgl&gt;,</span></span>
 <span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;">#   branching_logic &lt;lgl&gt;, required_field &lt;lgl&gt;, custom_alignment &lt;lgl&gt;,</span></span>
diff --git a/reference/easy_redcap.html b/reference/easy_redcap.html
index ce51319..776e2a1 100644
--- a/reference/easy_redcap.html
+++ b/reference/easy_redcap.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Secure API key storage and data acquisition in one — easy_redcap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Secure API key storage and data acquisition in one — easy_redcap"><meta name="description" content="Secure API key storage and data acquisition in one"><meta property="og:description" content="Secure API key storage and data acquisition in one"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Secure API key storage and data acquisition in one — easy_redcap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Secure API key storage and data acquisition in one — easy_redcap"><meta name="description" content="Secure API key storage and data acquisition in one"><meta property="og:description" content="Secure API key storage and data acquisition in one"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Secure API key storage and data acquisition in one</h1>
+
+      <h1>Secure API key storage and data acquisition in one</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
       <div class="d-none name"><code>easy_redcap.Rd</code></div>
     </div>
@@ -44,7 +45,7 @@
 
     <div class="section level2">
     <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
-    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">easy_redcap</span><span class="op">(</span><span class="va">project.name</span>, widen.data <span class="op">=</span> <span class="cn">TRUE</span>, <span class="va">uri</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">easy_redcap</span><span class="op">(</span><span class="va">project.name</span>, widen.data <span class="op">=</span> <span class="cn">TRUE</span>, <span class="va">uri</span>, raw_or_label <span class="op">=</span> <span class="st">"both"</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div class="section level2">
@@ -64,6 +65,12 @@
 <dd><p>REDCap database API uri</p></dd>
 
 
+<dt id="arg-raw-or-label">raw_or_label<a class="anchor" aria-label="anchor" href="#arg-raw-or-label"></a></dt>
+<dd><p>argument passed on to
+<a href="read_redcap_tables.html">read_redcap_tables</a>. Default is "both" to get labelled
+data.</p></dd>
+
+
 <dt id="arg--">...<a class="anchor" aria-label="anchor" href="#arg--"></a></dt>
 <dd><p>arguments passed on to <a href="read_redcap_tables.html">read_redcap_tables</a>.</p></dd>
 
@@ -76,7 +83,7 @@
     <div class="section level2">
     <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
     <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span> <span class="co"># \dontrun{</span></span></span>
-<span class="r-in"><span><span class="fu">easy_redcap</span><span class="op">(</span><span class="st">"My_new_project"</span>,fields<span class="op">=</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>,<span class="st">"age"</span>,<span class="st">"hypertension"</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-in"><span><span class="fu">easy_redcap</span><span class="op">(</span><span class="st">"My_new_project"</span>, fields <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"record_id"</span>, <span class="st">"age"</span>, <span class="st">"hypertension"</span><span class="op">)</span><span class="op">)</span></span></span>
 <span class="r-in"><span><span class="op">}</span> <span class="co"># }</span></span></span>
 </code></pre></div>
     </div>
diff --git a/reference/export_redcap_instrument.html b/reference/export_redcap_instrument.html
index 235b55f..97ed803 100644
--- a/reference/export_redcap_instrument.html
+++ b/reference/export_redcap_instrument.html
@@ -5,7 +5,7 @@ function can be used to create (an) instrument(s) to add to a project in
 production."><meta property="og:description" content="Metadata can be added by editing the data dictionary of a project in the
 initial design phase. If you want to later add new instruments, this
 function can be used to create (an) instrument(s) to add to a project in
-production."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+production."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -13,7 +13,7 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,7 +39,8 @@ production."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Creates zip-file with necessary content to manually add instrument to database</h1>
+
+      <h1>Creates zip-file with necessary content to manually add instrument to database</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/export_redcap_instrument.R" class="external-link"><code>R/export_redcap_instrument.R</code></a></small>
       <div class="d-none name"><code>export_redcap_instrument.Rd</code></div>
     </div>
diff --git a/reference/fct2num.html b/reference/fct2num.html
index 18c7b76..dd6f432 100644
--- a/reference/fct2num.html
+++ b/reference/fct2num.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Allows conversion of factor to numeric values preserving original levels — fct2num • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Allows conversion of factor to numeric values preserving original levels — fct2num"><meta name="description" content="Allows conversion of factor to numeric values preserving original levels"><meta property="og:description" content="Allows conversion of factor to numeric values preserving original levels"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Allows conversion of factor to numeric values preserving original levels — fct2num • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Allows conversion of factor to numeric values preserving original levels — fct2num"><meta name="description" content="Allows conversion of factor to numeric values preserving original levels"><meta property="og:description" content="Allows conversion of factor to numeric values preserving original levels"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Allows conversion of factor to numeric values preserving original levels</h1>
+
+      <h1>Allows conversion of factor to numeric values preserving original levels</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>fct2num.Rd</code></div>
     </div>
diff --git a/reference/fct_drop.html b/reference/fct_drop.html
index db5feaa..c7f9de2 100644
--- a/reference/fct_drop.html
+++ b/reference/fct_drop.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Drop unused levels preserving label data — fct_drop • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Drop unused levels preserving label data — fct_drop"><meta name="description" content="This extends [forcats::fct_drop()] to natively work across a data.frame and
 replaces [base::droplevels()]."><meta property="og:description" content="This extends [forcats::fct_drop()] to natively work across a data.frame and
-replaces [base::droplevels()]."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+replaces [base::droplevels()]."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ replaces [base::droplevels()]."><meta property="og:image" content="https://agdam
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ replaces [base::droplevels()]."><meta property="og:image" content="https://agdam
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Drop unused levels preserving label data</h1>
+
+      <h1>Drop unused levels preserving label data</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/fct_drop.R" class="external-link"><code>R/fct_drop.R</code></a></small>
       <div class="d-none name"><code>fct_drop.Rd</code></div>
     </div>
diff --git a/reference/file_extension.html b/reference/file_extension.html
index 1e40471..a7d2bf0 100644
--- a/reference/file_extension.html
+++ b/reference/file_extension.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRECATED Helper to import files correctly — file_extension • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRECATED Helper to import files correctly — file_extension"><meta name="description" content="DEPRECATED Helper to import files correctly"><meta property="og:description" content="DEPRECATED Helper to import files correctly"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>DEPRECATED Helper to import files correctly — file_extension • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="DEPRECATED Helper to import files correctly — file_extension"><meta name="description" content="DEPRECATED Helper to import files correctly"><meta property="og:description" content="DEPRECATED Helper to import files correctly"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>DEPRECATED Helper to import files correctly</h1>
+
+      <h1>DEPRECATED Helper to import files correctly</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>file_extension.Rd</code></div>
     </div>
diff --git a/reference/focused_metadata.html b/reference/focused_metadata.html
index 1ec46c7..2c0c53e 100644
--- a/reference/focused_metadata.html
+++ b/reference/focused_metadata.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>focused_metadata — focused_metadata • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="focused_metadata — focused_metadata"><meta name="description" content="Extracts limited metadata for variables in a dataset"><meta property="og:description" content="Extracts limited metadata for variables in a dataset"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>focused_metadata — focused_metadata • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="focused_metadata — focused_metadata"><meta name="description" content="Extracts limited metadata for variables in a dataset"><meta property="og:description" content="Extracts limited metadata for variables in a dataset"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>focused_metadata</h1>
+
+      <h1>focused_metadata</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>focused_metadata.Rd</code></div>
     </div>
diff --git a/reference/format_redcap_factor.html b/reference/format_redcap_factor.html
index 16e16c1..468c305 100644
--- a/reference/format_redcap_factor.html
+++ b/reference/format_redcap_factor.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor"><meta name="description" content="Applying as_factor to the data.frame or variable, will
 coerce to a factor."><meta property="og:description" content="Applying as_factor to the data.frame or variable, will
-coerce to a factor."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+coerce to a factor."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ coerce to a factor."><meta property="og:image" content="https://agdamsbo.github.
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ coerce to a factor."><meta property="og:image" content="https://agdamsbo.github.
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Converts REDCap choices to factor levels and stores in labels attribute</h1>
+
+      <h1>Converts REDCap choices to factor levels and stores in labels attribute</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
       <div class="d-none name"><code>format_redcap_factor.Rd</code></div>
     </div>
diff --git a/reference/format_subheader.html b/reference/format_subheader.html
index 3a3eb9a..1209182 100644
--- a/reference/format_subheader.html
+++ b/reference/format_subheader.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Sub-header formatting wrapper — format_subheader • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Sub-header formatting wrapper — format_subheader"><meta name="description" content="Sub-header formatting wrapper"><meta property="og:description" content="Sub-header formatting wrapper"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Sub-header formatting wrapper — format_subheader • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Sub-header formatting wrapper — format_subheader"><meta name="description" content="Sub-header formatting wrapper"><meta property="og:description" content="Sub-header formatting wrapper"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Sub-header formatting wrapper</h1>
+
+      <h1>Sub-header formatting wrapper</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
       <div class="d-none name"><code>format_subheader.Rd</code></div>
     </div>
diff --git a/reference/get_api_key.html b/reference/get_api_key.html
index 231d2f6..e90d152 100644
--- a/reference/get_api_key.html
+++ b/reference/get_api_key.html
@@ -3,7 +3,7 @@
 sense. Wrapping key_get and key_set using the
 key_list to check if key is in storage already."><meta property="og:description" content="Attempting to make secure API key storage so simple, that no other way makes
 sense. Wrapping key_get and key_set using the
-key_list to check if key is in storage already."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+key_list to check if key is in storage already."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -11,7 +11,7 @@ key_list to check if key is in storage already."><meta property="og:image" conte
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -37,7 +37,8 @@ key_list to check if key is in storage already."><meta property="og:image" conte
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Retrieve project API key if stored, if not, set and retrieve</h1>
+
+      <h1>Retrieve project API key if stored, if not, set and retrieve</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/easy_redcap.R" class="external-link"><code>R/easy_redcap.R</code></a></small>
       <div class="d-none name"><code>get_api_key.Rd</code></div>
     </div>
diff --git a/reference/get_attr.html b/reference/get_attr.html
index 2ba4c40..2a441f8 100644
--- a/reference/get_attr.html
+++ b/reference/get_attr.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extract attribute. Returns NA if none — get_attr • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extract attribute. Returns NA if none — get_attr"><meta name="description" content="Extract attribute. Returns NA if none"><meta property="og:description" content="Extract attribute. Returns NA if none"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extract attribute. Returns NA if none — get_attr • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extract attribute. Returns NA if none — get_attr"><meta name="description" content="Extract attribute. Returns NA if none"><meta property="og:description" content="Extract attribute. Returns NA if none"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Extract attribute. Returns NA if none</h1>
+
+      <h1>Extract attribute. Returns NA if none</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>get_attr.Rd</code></div>
     </div>
diff --git a/reference/get_id_name.html b/reference/get_id_name.html
index c2ea9b6..7b7d559 100644
--- a/reference/get_id_name.html
+++ b/reference/get_id_name.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the id name — get_id_name • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Get the id name — get_id_name"><meta name="description" content="Get the id name"><meta property="og:description" content="Get the id name"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get the id name — get_id_name • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Get the id name — get_id_name"><meta name="description" content="Get the id name"><meta property="og:description" content="Get the id name"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Get the id name</h1>
+
+      <h1>Get the id name</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>get_id_name.Rd</code></div>
     </div>
diff --git a/reference/guess_time_only.html b/reference/guess_time_only.html
index 2ce8682..b170570 100644
--- a/reference/guess_time_only.html
+++ b/reference/guess_time_only.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Guess time variables based on naming pattern — guess_time_only • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Guess time variables based on naming pattern — guess_time_only"><meta name="description" content='This is for repairing data with time variables with appended "1970-01-01"'><meta property="og:description" content='This is for repairing data with time variables with appended "1970-01-01"'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Guess time variables based on naming pattern — guess_time_only • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Guess time variables based on naming pattern — guess_time_only"><meta name="description" content='This is for repairing data with time variables with appended "1970-01-01"'><meta property="og:description" content='This is for repairing data with time variables with appended "1970-01-01"'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Guess time variables based on naming pattern</h1>
+
+      <h1>Guess time variables based on naming pattern</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>guess_time_only.Rd</code></div>
     </div>
diff --git a/reference/guess_time_only_filter.html b/reference/guess_time_only_filter.html
index 4dca1c2..effced8 100644
--- a/reference/guess_time_only_filter.html
+++ b/reference/guess_time_only_filter.html
@@ -5,7 +5,7 @@ data format natively, so the "hms" class from `readr` is used. This
 has to be converted to character class before REDCap upload.'><meta property="og:description" content='This is just a try at guessing data type based on data class and column names
 hoping for a tiny bit of naming consistency. R does not include a time-only
 data format natively, so the "hms" class from `readr` is used. This
-has to be converted to character class before REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+has to be converted to character class before REDCap upload.'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -13,7 +13,7 @@ has to be converted to character class before REDCap upload.'><meta property="og
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,7 +39,8 @@ has to be converted to character class before REDCap upload.'><meta property="og
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Try at determining which are true time only variables</h1>
+
+      <h1>Try at determining which are true time only variables</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>guess_time_only_filter.Rd</code></div>
     </div>
diff --git a/reference/haven_all_levels.html b/reference/haven_all_levels.html
index c9571e5..3b16195 100644
--- a/reference/haven_all_levels.html
+++ b/reference/haven_all_levels.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Finish incomplete haven attributes substituting missings with values — haven_all_levels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Finish incomplete haven attributes substituting missings with values — haven_all_levels"><meta name="description" content="Finish incomplete haven attributes substituting missings with values"><meta property="og:description" content="Finish incomplete haven attributes substituting missings with values"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Finish incomplete haven attributes substituting missings with values — haven_all_levels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Finish incomplete haven attributes substituting missings with values — haven_all_levels"><meta name="description" content="Finish incomplete haven attributes substituting missings with values"><meta property="og:description" content="Finish incomplete haven attributes substituting missings with values"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Finish incomplete haven attributes substituting missings with values</h1>
+
+      <h1>Finish incomplete haven attributes substituting missings with values</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>haven_all_levels.Rd</code></div>
     </div>
diff --git a/reference/hms2character.html b/reference/hms2character.html
index e80bb0b..2e22779 100644
--- a/reference/hms2character.html
+++ b/reference/hms2character.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Change "hms" to "character" for REDCap upload. — hms2character • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Change " hms to for redcap upload. hms2character><meta name="description" content='Change "hms" to "character" for REDCap upload.'><meta property="og:description" content='Change "hms" to "character" for REDCap upload.'><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Change "hms" to "character" for REDCap upload. — hms2character • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Change " hms to for redcap upload. hms2character><meta name="description" content='Change "hms" to "character" for REDCap upload.'><meta property="og:description" content='Change "hms" to "character" for REDCap upload.'></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Change "hms" to "character" for REDCap upload.</h1>
+
+      <h1>Change "hms" to "character" for REDCap upload.</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>hms2character.Rd</code></div>
     </div>
diff --git a/reference/html_tag_wrap.html b/reference/html_tag_wrap.html
index e0c038c..cd50588 100644
--- a/reference/html_tag_wrap.html
+++ b/reference/html_tag_wrap.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple html tag wrapping for REDCap text formatting — html_tag_wrap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple html tag wrapping for REDCap text formatting — html_tag_wrap"><meta name="description" content="Simple html tag wrapping for REDCap text formatting"><meta property="og:description" content="Simple html tag wrapping for REDCap text formatting"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Simple html tag wrapping for REDCap text formatting — html_tag_wrap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Simple html tag wrapping for REDCap text formatting — html_tag_wrap"><meta name="description" content="Simple html tag wrapping for REDCap text formatting"><meta property="og:description" content="Simple html tag wrapping for REDCap text formatting"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Simple html tag wrapping for REDCap text formatting</h1>
+
+      <h1>Simple html tag wrapping for REDCap text formatting</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/html_styling.R" class="external-link"><code>R/html_styling.R</code></a></small>
       <div class="d-none name"><code>html_tag_wrap.Rd</code></div>
     </div>
diff --git a/reference/index.html b/reference/index.html
index 988092e..fc0be22 100644
--- a/reference/index.html
+++ b/reference/index.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Package index"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Package index • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Package index"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-index">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Package index</h1>
+
+      <h1>Package index</h1>
     </div>
 
     <div class="section level2">
@@ -139,6 +140,12 @@
         <dd>DEPRICATED Create zips file with necessary content based on data set</dd>
       </dl><dl><dt>
 
+          <code><a href="cut_string_length.html">cut_string_length()</a></code>
+
+        </dt>
+        <dd>Cut string to desired length</dd>
+      </dl><dl><dt>
+
           <code><a href="d2w.html">d2w()</a></code>
 
         </dt>
diff --git a/reference/is.labelled.html b/reference/is.labelled.html
index 2f1acdd..814aacd 100644
--- a/reference/is.labelled.html
+++ b/reference/is.labelled.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Tests for multiple label classes — is.labelled • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Tests for multiple label classes — is.labelled"><meta name="description" content="Tests for multiple label classes"><meta property="og:description" content="Tests for multiple label classes"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Tests for multiple label classes — is.labelled • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Tests for multiple label classes — is.labelled"><meta name="description" content="Tests for multiple label classes"><meta property="og:description" content="Tests for multiple label classes"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Tests for multiple label classes</h1>
+
+      <h1>Tests for multiple label classes</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>is.labelled.Rd</code></div>
     </div>
diff --git a/reference/is_missing.html b/reference/is_missing.html
index b90d207..4d23d3e 100644
--- a/reference/is_missing.html
+++ b/reference/is_missing.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta name="description" content="Multi missing check"><meta property="og:description" content="Multi missing check"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Multi missing check — is_missing • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Multi missing check — is_missing"><meta name="description" content="Multi missing check"><meta property="og:description" content="Multi missing check"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Multi missing check</h1>
+
+      <h1>Multi missing check</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>is_missing.Rd</code></div>
     </div>
diff --git a/reference/is_repeated_longitudinal.html b/reference/is_repeated_longitudinal.html
index fc2949a..9616cce 100644
--- a/reference/is_repeated_longitudinal.html
+++ b/reference/is_repeated_longitudinal.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if repeatable or longitudinal — is_repeated_longitudinal • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test if repeatable or longitudinal — is_repeated_longitudinal"><meta name="description" content="Test if repeatable or longitudinal"><meta property="og:description" content="Test if repeatable or longitudinal"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if repeatable or longitudinal — is_repeated_longitudinal • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test if repeatable or longitudinal — is_repeated_longitudinal"><meta name="description" content="Test if repeatable or longitudinal"><meta property="og:description" content="Test if repeatable or longitudinal"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Test if repeatable or longitudinal</h1>
+
+      <h1>Test if repeatable or longitudinal</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>is_repeated_longitudinal.Rd</code></div>
     </div>
diff --git a/reference/mark_complete.html b/reference/mark_complete.html
index 59aad72..724abd9 100644
--- a/reference/mark_complete.html
+++ b/reference/mark_complete.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Completion marking based on completed upload — mark_complete • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Completion marking based on completed upload — mark_complete"><meta name="description" content="Completion marking based on completed upload"><meta property="og:description" content="Completion marking based on completed upload"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Completion marking based on completed upload — mark_complete • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Completion marking based on completed upload — mark_complete"><meta name="description" content="Completion marking based on completed upload"><meta property="og:description" content="Completion marking based on completed upload"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Completion marking based on completed upload</h1>
+
+      <h1>Completion marking based on completed upload</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>mark_complete.Rd</code></div>
     </div>
diff --git a/reference/match_fields_to_form.html b/reference/match_fields_to_form.html
index f57bfcf..8e7d285 100644
--- a/reference/match_fields_to_form.html
+++ b/reference/match_fields_to_form.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Match fields to forms — match_fields_to_form • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Match fields to forms — match_fields_to_form"><meta name="description" content="Match fields to forms"><meta property="og:description" content="Match fields to forms"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Match fields to forms — match_fields_to_form • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Match fields to forms — match_fields_to_form"><meta name="description" content="Match fields to forms"><meta property="og:description" content="Match fields to forms"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Match fields to forms</h1>
+
+      <h1>Match fields to forms</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>match_fields_to_form.Rd</code></div>
     </div>
diff --git a/reference/mtcars_redcap.html b/reference/mtcars_redcap.html
index 498b69f..8297e84 100644
--- a/reference/mtcars_redcap.html
+++ b/reference/mtcars_redcap.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap"><meta name="description" content="mtcars dataset slightly modified to use for Shiny app upload demonstration"><meta property="og:description" content="mtcars dataset slightly modified to use for Shiny app upload demonstration"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap"><meta name="description" content="mtcars dataset slightly modified to use for Shiny app upload demonstration"><meta property="og:description" content="mtcars dataset slightly modified to use for Shiny app upload demonstration"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
+
+      <h1>mtcars dataset slightly modified to use for Shiny app upload demonstration</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/mtcars_redcap.R" class="external-link"><code>R/mtcars_redcap.R</code></a></small>
       <div class="d-none name"><code>mtcars_redcap.Rd</code></div>
     </div>
diff --git a/reference/named_levels.html b/reference/named_levels.html
index d4dded2..b44820b 100644
--- a/reference/named_levels.html
+++ b/reference/named_levels.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get named vector of factor levels and values — named_levels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Get named vector of factor levels and values — named_levels"><meta name="description" content="Get named vector of factor levels and values"><meta property="og:description" content="Get named vector of factor levels and values"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Get named vector of factor levels and values — named_levels • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Get named vector of factor levels and values — named_levels"><meta name="description" content="Get named vector of factor levels and values"><meta property="og:description" content="Get named vector of factor levels and values"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Get named vector of factor levels and values</h1>
+
+      <h1>Get named vector of factor levels and values</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>named_levels.Rd</code></div>
     </div>
diff --git a/reference/nav_bar_page.html b/reference/nav_bar_page.html
index 0bb31f6..014f642 100644
--- a/reference/nav_bar_page.html
+++ b/reference/nav_bar_page.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Nav_bar defining function for shiny ui — nav_bar_page • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Nav_bar defining function for shiny ui — nav_bar_page"><meta name="description" content="Nav_bar defining function for shiny ui"><meta property="og:description" content="Nav_bar defining function for shiny ui"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Nav_bar defining function for shiny ui — nav_bar_page • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Nav_bar defining function for shiny ui — nav_bar_page"><meta name="description" content="Nav_bar defining function for shiny ui"><meta property="og:description" content="Nav_bar defining function for shiny ui"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Nav_bar defining function for shiny ui</h1>
+
+      <h1>Nav_bar defining function for shiny ui</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>nav_bar_page.Rd</code></div>
     </div>
diff --git a/reference/numchar2fct.html b/reference/numchar2fct.html
index 7bef45e..965e7a0 100644
--- a/reference/numchar2fct.html
+++ b/reference/numchar2fct.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Applying var2fct across data set — numchar2fct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Applying var2fct across data set — numchar2fct"><meta name="description" content="Individual thresholds for character and numeric columns"><meta property="og:description" content="Individual thresholds for character and numeric columns"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Applying var2fct across data set — numchar2fct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Applying var2fct across data set — numchar2fct"><meta name="description" content="Individual thresholds for character and numeric columns"><meta property="og:description" content="Individual thresholds for character and numeric columns"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Applying var2fct across data set</h1>
+
+      <h1>Applying var2fct across data set</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>numchar2fct.Rd</code></div>
     </div>
diff --git a/reference/parse_data.html b/reference/parse_data.html
index 9c6cd48..3d19e3f 100644
--- a/reference/parse_data.html
+++ b/reference/parse_data.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Helper to auto-parse un-formatted data with haven and readr — parse_data • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Helper to auto-parse un-formatted data with haven and readr — parse_data"><meta name="description" content="Helper to auto-parse un-formatted data with haven and readr"><meta property="og:description" content="Helper to auto-parse un-formatted data with haven and readr"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Helper to auto-parse un-formatted data with haven and readr — parse_data • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Helper to auto-parse un-formatted data with haven and readr — parse_data"><meta name="description" content="Helper to auto-parse un-formatted data with haven and readr"><meta property="og:description" content="Helper to auto-parse un-formatted data with haven and readr"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Helper to auto-parse un-formatted data with haven and readr</h1>
+
+      <h1>Helper to auto-parse un-formatted data with haven and readr</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>parse_data.Rd</code></div>
     </div>
diff --git a/reference/possibly_numeric.html b/reference/possibly_numeric.html
index 225b11f..b9c2bc1 100644
--- a/reference/possibly_numeric.html
+++ b/reference/possibly_numeric.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric"><meta name="description" content="Tests if vector can be interpreted as numeric without introducing NAs by
 coercion"><meta property="og:description" content="Tests if vector can be interpreted as numeric without introducing NAs by
-coercion"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+coercion"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ coercion"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCA
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ coercion"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCA
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Tests if vector can be interpreted as numeric without introducing NAs by coercion</h1>
+
+      <h1>Tests if vector can be interpreted as numeric without introducing NAs by coercion</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>possibly_numeric.Rd</code></div>
     </div>
diff --git a/reference/possibly_roman.html b/reference/possibly_roman.html
index 0e6fb7d..b90b458 100644
--- a/reference/possibly_roman.html
+++ b/reference/possibly_roman.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if vector can be interpreted as roman numerals — possibly_roman • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test if vector can be interpreted as roman numerals — possibly_roman"><meta name="description" content="Test if vector can be interpreted as roman numerals"><meta property="og:description" content="Test if vector can be interpreted as roman numerals"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Test if vector can be interpreted as roman numerals — possibly_roman • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Test if vector can be interpreted as roman numerals — possibly_roman"><meta name="description" content="Test if vector can be interpreted as roman numerals"><meta property="og:description" content="Test if vector can be interpreted as roman numerals"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Test if vector can be interpreted as roman numerals</h1>
+
+      <h1>Test if vector can be interpreted as roman numerals</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>possibly_roman.Rd</code></div>
     </div>
diff --git a/reference/process_user_input.character.html b/reference/process_user_input.character.html
index 80c796f..6fc03d4 100644
--- a/reference/process_user_input.character.html
+++ b/reference/process_user_input.character.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing character — process_user_input.character • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing character — process_user_input.character"><meta name="description" content="User input processing character"><meta property="og:description" content="User input processing character"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing character — process_user_input.character • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing character — process_user_input.character"><meta name="description" content="User input processing character"><meta property="og:description" content="User input processing character"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>User input processing character</h1>
+
+      <h1>User input processing character</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
       <div class="d-none name"><code>process_user_input.character.Rd</code></div>
     </div>
diff --git a/reference/process_user_input.data.frame.html b/reference/process_user_input.data.frame.html
index 71e0337..c4f8d85 100644
--- a/reference/process_user_input.data.frame.html
+++ b/reference/process_user_input.data.frame.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing data.frame — process_user_input.data.frame • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing data.frame — process_user_input.data.frame"><meta name="description" content="User input processing data.frame"><meta property="og:description" content="User input processing data.frame"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing data.frame — process_user_input.data.frame • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing data.frame — process_user_input.data.frame"><meta name="description" content="User input processing data.frame"><meta property="og:description" content="User input processing data.frame"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>User input processing data.frame</h1>
+
+      <h1>User input processing data.frame</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
       <div class="d-none name"><code>process_user_input.data.frame.Rd</code></div>
     </div>
diff --git a/reference/process_user_input.default.html b/reference/process_user_input.default.html
index 40c09df..90828f7 100644
--- a/reference/process_user_input.default.html
+++ b/reference/process_user_input.default.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing default — process_user_input.default • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing default — process_user_input.default"><meta name="description" content="User input processing default"><meta property="og:description" content="User input processing default"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing default — process_user_input.default • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing default — process_user_input.default"><meta name="description" content="User input processing default"><meta property="og:description" content="User input processing default"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>User input processing default</h1>
+
+      <h1>User input processing default</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
       <div class="d-none name"><code>process_user_input.default.Rd</code></div>
     </div>
diff --git a/reference/process_user_input.html b/reference/process_user_input.html
index d4e8a3c..8fda790 100644
--- a/reference/process_user_input.html
+++ b/reference/process_user_input.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing — process_user_input • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing — process_user_input"><meta name="description" content="User input processing"><meta property="og:description" content="User input processing"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing — process_user_input • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing — process_user_input"><meta name="description" content="User input processing"><meta property="og:description" content="User input processing"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>User input processing</h1>
+
+      <h1>User input processing</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
       <div class="d-none name"><code>process_user_input.Rd</code></div>
     </div>
diff --git a/reference/process_user_input.response.html b/reference/process_user_input.response.html
index c0f755c..143014b 100644
--- a/reference/process_user_input.response.html
+++ b/reference/process_user_input.response.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing response — process_user_input.response • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing response — process_user_input.response"><meta name="description" content="User input processing response"><meta property="og:description" content="User input processing response"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>User input processing response — process_user_input.response • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="User input processing response — process_user_input.response"><meta name="description" content="User input processing response"><meta property="og:description" content="User input processing response"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>User input processing response</h1>
+
+      <h1>User input processing response</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/process_user_input.r" class="external-link"><code>R/process_user_input.r</code></a></small>
       <div class="d-none name"><code>process_user_input.response.Rd</code></div>
     </div>
diff --git a/reference/read_input.html b/reference/read_input.html
index b4806f4..25856f6 100644
--- a/reference/read_input.html
+++ b/reference/read_input.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Flexible file import based on extension — read_input • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Flexible file import based on extension — read_input"><meta name="description" content="Flexible file import based on extension"><meta property="og:description" content="Flexible file import based on extension"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Flexible file import based on extension — read_input • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Flexible file import based on extension — read_input"><meta name="description" content="Flexible file import based on extension"><meta property="og:description" content="Flexible file import based on extension"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Flexible file import based on extension</h1>
+
+      <h1>Flexible file import based on extension</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>read_input.Rd</code></div>
     </div>
diff --git a/reference/read_redcap_instrument.html b/reference/read_redcap_instrument.html
index eb807e7..90cb406 100644
--- a/reference/read_redcap_instrument.html
+++ b/reference/read_redcap_instrument.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument"><meta name="description" content="Convenience function to download complete instrument, using token storage
 in keyring."><meta property="og:description" content="Convenience function to download complete instrument, using token storage
-in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+in keyring."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ in keyring."><meta property="og:image" content="https://agdamsbo.github.io/REDCa
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
+
+      <h1>Convenience function to download complete instrument, using token storage in keyring.</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_instrument.R" class="external-link"><code>R/read_redcap_instrument.R</code></a></small>
       <div class="d-none name"><code>read_redcap_instrument.Rd</code></div>
     </div>
diff --git a/reference/read_redcap_tables.html b/reference/read_redcap_tables.html
index c166ee2..83ee1ea 100644
--- a/reference/read_redcap_tables.html
+++ b/reference/read_redcap_tables.html
@@ -11,7 +11,7 @@ only downloading specified fields, forms and/or events using the built-in
 focused_metadata including some clean-up.
 Works with classical and longitudinal projects with or without repeating
 instruments.
-Will preserve metadata in the data.frames as labels."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+Will preserve metadata in the data.frames as labels."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -19,7 +19,7 @@ Will preserve metadata in the data.frames as labels."><meta property="og:image"
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -45,7 +45,8 @@ Will preserve metadata in the data.frames as labels."><meta property="og:image"
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Download REDCap data</h1>
+
+      <h1>Download REDCap data</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
       <div class="d-none name"><code>read_redcap_tables.Rd</code></div>
     </div>
diff --git a/reference/redcap_wider.html b/reference/redcap_wider.html
index f7dc0c6..a95d293 100644
--- a/reference/redcap_wider.html
+++ b/reference/redcap_wider.html
@@ -5,7 +5,7 @@ on a REDCap output (from read_redcap_tables) or manually
 split by REDCap_split."><meta property="og:description" content="Converts a list of REDCap data.frames from long to wide format.
 In essence it is a wrapper for the pivot_wider function applied
 on a REDCap output (from read_redcap_tables) or manually
-split by REDCap_split."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+split by REDCap_split."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -13,7 +13,7 @@ split by REDCap_split."><meta property="og:image" content="https://agdamsbo.gith
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -39,7 +39,8 @@ split by REDCap_split."><meta property="og:image" content="https://agdamsbo.gith
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Transforms list of REDCap data.frames to a single wide data.frame</h1>
+
+      <h1>Transforms list of REDCap data.frames to a single wide data.frame</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
       <div class="d-none name"><code>redcap_wider.Rd</code></div>
     </div>
diff --git a/reference/redcapcast_data.html b/reference/redcapcast_data.html
index 84cd772..37686f4 100644
--- a/reference/redcapcast_data.html
+++ b/reference/redcapcast_data.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Data set for demonstration — redcapcast_data • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Data set for demonstration — redcapcast_data"><meta name="description" content="This is a small dataset from a REDCap database for demonstrational purposes.
 Contains only synthetic data."><meta property="og:description" content="This is a small dataset from a REDCap database for demonstrational purposes.
-Contains only synthetic data."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+Contains only synthetic data."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ Contains only synthetic data."><meta property="og:image" content="https://agdams
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Data set for demonstration</h1>
+
+      <h1>Data set for demonstration</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
       <div class="d-none name"><code>redcapcast_data.Rd</code></div>
     </div>
diff --git a/reference/redcapcast_meta.html b/reference/redcapcast_meta.html
index 95791f2..27cda40 100644
--- a/reference/redcapcast_meta.html
+++ b/reference/redcapcast_meta.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCap metadata from data base — redcapcast_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap metadata from data base — redcapcast_meta"><meta name="description" content="This metadata dataset from a REDCap database is for demonstration purposes."><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstration purposes."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>REDCap metadata from data base — redcapcast_meta • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap metadata from data base — redcapcast_meta"><meta name="description" content="This metadata dataset from a REDCap database is for demonstration purposes."><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstration purposes."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>REDCap metadata from data base</h1>
+
+      <h1>REDCap metadata from data base</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
       <div class="d-none name"><code>redcapcast_meta.Rd</code></div>
     </div>
diff --git a/reference/replace_curly_quote.html b/reference/replace_curly_quote.html
index af6ecb1..3f147dd 100644
--- a/reference/replace_curly_quote.html
+++ b/reference/replace_curly_quote.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Replace curly apostrophes and quotes from word — replace_curly_quote • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Replace curly apostrophes and quotes from word — replace_curly_quote"><meta name="description" content="Copied from textclean, which has not been updated since 2018 and is not
 on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:description" content="Copied from textclean, which has not been updated since 2018 and is not
-on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+on CRAN. Github:https://github.com/trinker/textclean"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:image"
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ on CRAN. Github:https://github.com/trinker/textclean"><meta property="og:image"
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Replace curly apostrophes and quotes from word</h1>
+
+      <h1>Replace curly apostrophes and quotes from word</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/doc2dd.R" class="external-link"><code>R/doc2dd.R</code></a></small>
       <div class="d-none name"><code>replace_curly_quote.Rd</code></div>
     </div>
diff --git a/reference/sanitize_split.html b/reference/sanitize_split.html
index 9d5cc85..a56ed82 100644
--- a/reference/sanitize_split.html
+++ b/reference/sanitize_split.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Sanitize list of data frames — sanitize_split • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Sanitize list of data frames — sanitize_split"><meta name="description" content="Removing empty rows"><meta property="og:description" content="Removing empty rows"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Sanitize list of data frames — sanitize_split • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Sanitize list of data frames — sanitize_split"><meta name="description" content="Removing empty rows"><meta property="og:description" content="Removing empty rows"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Sanitize list of data frames</h1>
+
+      <h1>Sanitize list of data frames</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>sanitize_split.Rd</code></div>
     </div>
diff --git a/reference/set_attr.html b/reference/set_attr.html
index f337c4a..36b05b0 100644
--- a/reference/set_attr.html
+++ b/reference/set_attr.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Set attributes for named attribute. Appends if attr is NULL — set_attr • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Set attributes for named attribute. Appends if attr is NULL — set_attr"><meta name="description" content="Set attributes for named attribute. Appends if attr is NULL"><meta property="og:description" content="Set attributes for named attribute. Appends if attr is NULL"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Set attributes for named attribute. Appends if attr is NULL — set_attr • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Set attributes for named attribute. Appends if attr is NULL — set_attr"><meta name="description" content="Set attributes for named attribute. Appends if attr is NULL"><meta property="og:description" content="Set attributes for named attribute. Appends if attr is NULL"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Set attributes for named attribute. Appends if attr is NULL</h1>
+
+      <h1>Set attributes for named attribute. Appends if attr is NULL</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/as_factor.R" class="external-link"><code>R/as_factor.R</code></a></small>
       <div class="d-none name"><code>set_attr.Rd</code></div>
     </div>
diff --git a/reference/shiny_cast.html b/reference/shiny_cast.html
index 6deaeef..84d3b71 100644
--- a/reference/shiny_cast.html
+++ b/reference/shiny_cast.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Launch the included Shiny-app for database casting and upload — shiny_cast • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Launch the included Shiny-app for database casting and upload — shiny_cast"><meta name="description" content="Wraps shiny::runApp()"><meta property="og:description" content="Wraps shiny::runApp()"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Launch the included Shiny-app for database casting and upload — shiny_cast • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Launch the included Shiny-app for database casting and upload — shiny_cast"><meta name="description" content="Wraps shiny::runApp()"><meta property="og:description" content="Wraps shiny::runApp()"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Launch the included Shiny-app for database casting and upload</h1>
+
+      <h1>Launch the included Shiny-app for database casting and upload</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/shiny_cast.R" class="external-link"><code>R/shiny_cast.R</code></a></small>
       <div class="d-none name"><code>shiny_cast.Rd</code></div>
     </div>
diff --git a/reference/split_non_repeating_forms.html b/reference/split_non_repeating_forms.html
index f337dd8..b2ffbd4 100644
--- a/reference/split_non_repeating_forms.html
+++ b/reference/split_non_repeating_forms.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split a data frame into separate tables for each form — split_non_repeating_forms • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split a data frame into separate tables for each form — split_non_repeating_forms"><meta name="description" content="Split a data frame into separate tables for each form"><meta property="og:description" content="Split a data frame into separate tables for each form"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Split a data frame into separate tables for each form — split_non_repeating_forms • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Split a data frame into separate tables for each form — split_non_repeating_forms"><meta name="description" content="Split a data frame into separate tables for each form"><meta property="og:description" content="Split a data frame into separate tables for each form"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
+
+      <h1>Split a data frame into separate tables for each form</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
     </div>
diff --git a/reference/strsplitx.html b/reference/strsplitx.html
index f0afc1b..99a0f28 100644
--- a/reference/strsplitx.html
+++ b/reference/strsplitx.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Extended string splitting — strsplitx • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Extended string splitting — strsplitx"><meta name="description" content="Can be used as a substitute of the base function. Main claim to fame is
 easing the split around the defined delimiter, see example."><meta property="og:description" content="Can be used as a substitute of the base function. Main claim to fame is
-easing the split around the defined delimiter, see example."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+easing the split around the defined delimiter, see example."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ easing the split around the defined delimiter, see example."><meta property="og:
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ easing the split around the defined delimiter, see example."><meta property="og:
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Extended string splitting</h1>
+
+      <h1>Extended string splitting</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
       <div class="d-none name"><code>strsplitx.Rd</code></div>
     </div>
diff --git a/reference/suffix2label.html b/reference/suffix2label.html
index 30034ce..1395024 100644
--- a/reference/suffix2label.html
+++ b/reference/suffix2label.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Transfer variable name suffix to label in widened data — suffix2label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Transfer variable name suffix to label in widened data — suffix2label"><meta name="description" content="Transfer variable name suffix to label in widened data"><meta property="og:description" content="Transfer variable name suffix to label in widened data"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Transfer variable name suffix to label in widened data — suffix2label • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Transfer variable name suffix to label in widened data — suffix2label"><meta name="description" content="Transfer variable name suffix to label in widened data"><meta property="og:description" content="Transfer variable name suffix to label in widened data"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Transfer variable name suffix to label in widened data</h1>
+
+      <h1>Transfer variable name suffix to label in widened data</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
       <div class="d-none name"><code>suffix2label.Rd</code></div>
     </div>
diff --git a/reference/time_only_correction.html b/reference/time_only_correction.html
index e7088fd..65013fe 100644
--- a/reference/time_only_correction.html
+++ b/reference/time_only_correction.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Correction based on time_only_filter function — time_only_correction • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Correction based on time_only_filter function — time_only_correction"><meta name="description" content="Correction based on time_only_filter function"><meta property="og:description" content="Correction based on time_only_filter function"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Correction based on time_only_filter function — time_only_correction • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Correction based on time_only_filter function — time_only_correction"><meta name="description" content="Correction based on time_only_filter function"><meta property="og:description" content="Correction based on time_only_filter function"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -7,7 +7,7 @@
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -33,7 +33,8 @@
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Correction based on time_only_filter function</h1>
+
+      <h1>Correction based on time_only_filter function</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>time_only_correction.Rd</code></div>
     </div>
diff --git a/reference/var2fct.html b/reference/var2fct.html
index 8688341..8b16683 100644
--- a/reference/var2fct.html
+++ b/reference/var2fct.html
@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Convert vector to factor based on threshold of number of unique levels — var2fct • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Convert vector to factor based on threshold of number of unique levels — var2fct"><meta name="description" content="This is a wrapper of forcats::as_factor, which sorts numeric vectors before
 factoring, but levels character vectors in order of appearance."><meta property="og:description" content="This is a wrapper of forcats::as_factor, which sorts numeric vectors before
-factoring, but levels character vectors in order of appearance."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+factoring, but levels character vectors in order of appearance."></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -9,7 +9,7 @@ factoring, but levels character vectors in order of appearance."><meta property=
 
     <a class="navbar-brand me-2" href="../index.html">REDCapCAST</a>
 
-    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">24.12.1</small>
+    <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">25.1.1</small>
 
 
     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -35,7 +35,8 @@ factoring, but levels character vectors in order of appearance."><meta property=
 </nav><div class="container template-reference-topic">
 <div class="row">
   <main id="main" class="col-md-9"><div class="page-header">
-      <img src="../logo.png" class="logo" alt=""><h1>Convert vector to factor based on threshold of number of unique levels</h1>
+
+      <h1>Convert vector to factor based on threshold of number of unique levels</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>var2fct.Rd</code></div>
     </div>
diff --git a/reference/vec2choice.html b/reference/vec2choice.html
index 4fe3854..03620d6 100644
--- a/reference/vec2choice.html
+++ b/reference/vec2choice.html
@@ -1,5 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice"><meta name="description" content="Named vector to REDCap choices (`wrapping compact_vec()`)"><meta property="og:description" content="Named vector to REDCap choices (`wrapping compact_vec()`)"><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
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-      <img src="../logo.png" class="logo" alt=""><h1>Named vector to REDCap choices (`wrapping compact_vec()`)</h1>
+
+      <h1>Named vector to REDCap choices (`wrapping compact_vec()`)</h1>
       <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/main/R/ds2dd_detailed.R" class="external-link"><code>R/ds2dd_detailed.R</code></a></small>
       <div class="d-none name"><code>vec2choice.Rd</code></div>
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diff --git a/search.json b/search.json
index 8a5384b..a7901b6 100644
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Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty","title":"GNU General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see <http://www.gnu.org/licenses/>. GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"two-different-ways-to-create-a-data-base","dir":"Articles","previous_headings":"","what":"Two different ways to create a data base","title":"Database-creation","text":"REDCapCAST provides two approaches creating data dictionary aimed helping two different cases: Easily create REDCap data base existing data set. Create table Word describing variables data base use create data base. following try come suggestions use approaches.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"easy-data-set-to-data-base-workflow","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Easy data set to data base workflow","title":"Database-creation","text":"first iteration dataset data dictionary function ds2dd(), creates basic data dictionary variables stored text. sufficient just storing old datasets/spreadsheets securely REDCap. advanced ds2dd_detailed() natural development. try apply common data classes data validation assume first column id number. outputs list dataset modified variable names comply REDCap naming conventions data dictionary. dataset correctly formatted data dictionary preserve much information possible. Additional specifications DataDictionary can made manually, can uploaded modified manually graphical user interface REDCap server.","code":"d1 <- mtcars |>   dplyr::mutate(record_id = seq_len(dplyr::n())) |>   ds2dd()   d1 |>   gt::gt() d2 <- REDCapCAST::redcapcast_data |>    dplyr::mutate(record_id = seq_len(dplyr::n()),                 region=factor(region)) |>   dplyr::select(record_id, dplyr::everything()) |>   (\\(.x){     .x[!grepl(\"_complete$\",names(.x))]   })() |>    (\\(.x){     .x[!grepl(\"^redcap\",names(.x))]   })() |>     ds2dd_detailed() |>    purrr::pluck(\"meta\")   d2 |>    gt::gt()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"data-base-from-table","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Data base from table","title":"Database-creation","text":"…instructions examples coming…","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"meta-data-and-data-upload","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Meta data and data upload","title":"Database-creation","text":"Now DataDictionary can exported spreadsheet uploaded can uploaded using REDCapR package (projects “Development” status). Use one two approaches :","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"manual-upload","dir":"Articles","previous_headings":"Two different ways to create a data base > Meta data and data upload","what":"Manual upload","title":"Database-creation","text":"","code":"write.csv(dd_ls$meta, \"datadictionary.csv\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"upload-with-redcapr","dir":"Articles","previous_headings":"Two different ways to create a data base > Meta data and data upload","what":"Upload with REDCapR","title":"Database-creation","text":"“REDCap R Handbook” written interfacing REDCap R using library(keyring)store credentials chapter 1.1.","code":"REDCapR::redcap_metadata_write(   dd_ls$meta,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"step-4---data-upload","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Step 4 - Data upload","title":"Database-creation","text":"two options available data upload meta data upload: manual REDCapR. latter shown .","code":"REDCapR::redcap_write(   dd_ls$data,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"casting-meta-data","dir":"Articles","previous_headings":"","what":"Casting meta data","title":"REDCapCAST","text":"easiest way use shiny_cast(). can access hosted version launch locally like :","code":"shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"reading-data-from-redcap","dir":"Articles","previous_headings":"","what":"Reading data from REDCap","title":"REDCapCAST","text":"get started, easiest way possible, can use easy_redcap() function (example ). need API-key REDCap server, uri/URL/address API connection (usually adress used accessing institutions REDCap servar, appended “/api/”). function includes convenience features ease work. project uses repeating instruments possible longitudinal project, can choose widen data. , result list instrument chosen extract data . Make sure specify fields instruments need, avoid save data locally, always source REDCap avoid possibly insecure local storage sensitive data.","code":"easy_redcap(   uri = \"YOUR URI\",   project.name = \"MY_PROJECT\",   widen.data = TRUE,   fields = c(\"record_id\", \"OTHER FIELDS\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"splitting-the-dataset","dir":"Articles","previous_headings":"","what":"Splitting the dataset","title":"REDCapCAST","text":"easy_redcap() function things hood. examples show nicely formatted output achieved. sample dataset Data Dictionary/metadata provided demonstration: save metadata labels dataset, can save field labels choices radio buttons dropdown features: REDCap_split function splits data set list data.frames. easy_redcap() (optionally) continue widen data, transforming list data.frames single data.frame one row subject/record_id (wide data format): Transfer suffixes labels:","code":"redcapcast_data |> gt::gt() redcapcast_meta |> gt::gt() labelled_data <-   apply_field_label(     data = redcapcast_data,     meta = redcapcast_meta   ) |>   apply_factor_labels(meta = redcapcast_meta) list <-   REDCap_split(     records = labelled_data,     metadata = redcapcast_meta,     forms = \"all\"   ) |>   # Next steps cleans up and removes generic columns   sanitize_split() str(list) #> List of 3 #>  $ baseline_data_start: tibble [6 × 14] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id                   : num [1:6] 1 2 3 4 5 6 #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name           : chr [1:6] \"inclusion\" \"inclusion\" \"inclusion\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:6] \"1203401OB4\" \"0102342303\" \"2301569823\" \"0204051342\" ... #>   .. ..- attr(*, \"label\")= chr \"CPR (Danish civil registration number)\" #>   ..$ inclusion                   : Date[1:6], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ inclusion_time              : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ... #>   .. ..- attr(*, \"units\")= chr \"secs\" #>   ..$ dob                         : Date[1:6], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:6] 83 89.1 66.1 117.9 126.2 ... #>   .. ..- attr(*, \"label\")= chr \"Age\\r\\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in\"| __truncated__ #>   ..$ age_integer                 : num [1:6] 83 89 66 117 126 91 #>   .. ..- attr(*, \"label\")= chr \"Age integer\\r\\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C\"| __truncated__ #>   ..$ sex                         : chr [1:6] \"female\" \"male\" \"male\" \"female\" ... #>   .. ..- attr(*, \"label\")= chr \"Legal sex\" #>   ..$ cohabitation                : 'labelled' chr [1:6] \"Yes\" \"Yes\" \"No\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Cohabitation\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ hypertension                : 'labelled' chr [1:6] \"No\" \"No\" \"Yes\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Hypertension\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ diabetes                    : 'labelled' chr [1:6] \"Yes\" \"No\" \"Yes\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Diabetes\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ region                      : 'labelled' chr [1:6] \"East\" \"South\" \"North\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Region\" #>   .. ..- attr(*, \"labels\")= Named chr [1:4] \"1\" \"2\" \"3\" \"4\" #>   .. .. ..- attr(*, \"names\")= chr [1:4] \"North\" \"East\" \"South\" \"West\" #>   ..$ baseline_data_start_complete: chr [1:6] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ mrs                : tibble [5 × 6] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id        : num [1:5] 1 2 2 3 3 #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name: chr [1:5] \"inclusion\" \"inclusion\" \"follow1\" \"follow1\" ... #>   ..$ mrs_assessed     : 'labelled' chr [1:5] \"Yes\" \"Yes\" \"Yes\" \"Yes\" ... #>   .. ..- attr(*, \"label\")= chr \"Assesed\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ mrs_date         : Date[1:5], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score        : 'labelled' num [1:5] 1 1 3 2 1 #>   .. ..- attr(*, \"label\")= chr \"mRS score\" #>   .. ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   ..$ mrs_complete     : chr [1:5] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event          : tibble [13 × 8] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id               : num [1:13] 2 3 3 3 3 3 4 4 4 4 ... #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name       : chr [1:13] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:13] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:13] 1 1 2 1 2 3 1 2 1 2 ... #>   ..$ event_datetime          : POSIXct[1:13], format: \"2024-01-18 12:49:42\" \"2024-01-18 12:49:58\" ... #>   ..$ event_age               : num [1:13] NA NA NA NA NA NA 96 105 118 118 ... #>   .. ..- attr(*, \"label\")= chr \"Age at event\" #>   ..$ event_type              : 'labelled' chr [1:13] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   .. ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   .. ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>   ..$ new_event_complete      : chr [1:13] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... wide_data <- redcap_wider(list,   event.glue = \"{.value}____{redcap_event_name}\",   inst.glue = \"{.value}____{redcap_repeat_instance}\" ) #> Joining with `by = join_by(record_id)` #> Joining with `by = join_by(record_id)` wide_data |> str() #> tibble [6 × 49] (S3: tbl_df/tbl/data.frame) #>  $ record_id                         : num [1:6] 1 2 3 4 5 6 #>   ..- attr(*, \"label\")= chr \"ID\" #>  $ cpr                               : chr [1:6] \"1203401OB4\" \"0102342303\" \"2301569823\" \"0204051342\" ... #>   ..- attr(*, \"label\")= chr \"CPR (Danish civil registration number)\" #>  $ inclusion                         : Date[1:6], format: \"2023-03-13\" \"2023-03-01\" ... #>  $ inclusion_time                    : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ... #>   ..- attr(*, \"units\")= chr \"secs\" #>  $ dob                               : Date[1:6], format: \"1940-03-12\" \"1934-02-01\" ... #>  $ age                               : num [1:6] 83 89.1 66.1 117.9 126.2 ... #>   ..- attr(*, \"label\")= chr \"Age\\r\\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in\"| __truncated__ #>  $ age_integer                       : num [1:6] 83 89 66 117 126 91 #>   ..- attr(*, \"label\")= chr \"Age integer\\r\\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C\"| __truncated__ #>  $ sex                               : chr [1:6] \"female\" \"male\" \"male\" \"female\" ... #>   ..- attr(*, \"label\")= chr \"Legal sex\" #>  $ cohabitation                      : 'labelled' chr [1:6] \"Yes\" \"Yes\" \"No\" NA ... #>   ..- attr(*, \"label\")= chr \"Cohabitation\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ hypertension                      : 'labelled' chr [1:6] \"No\" \"No\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Hypertension\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ diabetes                          : 'labelled' chr [1:6] \"Yes\" \"No\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Diabetes\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ region                            : 'labelled' chr [1:6] \"East\" \"South\" \"North\" NA ... #>   ..- attr(*, \"label\")= chr \"Region\" #>   ..- attr(*, \"labels\")= Named chr [1:4] \"1\" \"2\" \"3\" \"4\" #>   .. ..- attr(*, \"names\")= chr [1:4] \"North\" \"East\" \"South\" \"West\" #>  $ baseline_data_start_complete      : chr [1:6] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ mrs_assessed____inclusion         : 'labelled' chr [1:6] \"Yes\" \"Yes\" NA NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_assessed____follow1           : 'labelled' chr [1:6] NA \"Yes\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_assessed____follow2           : 'labelled' chr [1:6] NA NA \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_date____inclusion             : Date[1:6], format: \"2023-03-13\" \"2023-03-07\" ... #>  $ mrs_date____follow1               : Date[1:6], format: NA \"2023-03-09\" ... #>  $ mrs_date____follow2               : Date[1:6], format: NA NA ... #>  $ mrs_score____inclusion            : 'labelled' num [1:6] 1 1 NA NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_score____follow1              : 'labelled' num [1:6] NA 3 2 NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_score____follow2              : 'labelled' num [1:6] NA NA 1 NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_complete____inclusion         : chr [1:6] \"Incomplete\" \"Incomplete\" NA NA ... #>  $ mrs_complete____follow1           : chr [1:6] NA \"Incomplete\" \"Incomplete\" NA ... #>  $ mrs_complete____follow2           : chr [1:6] NA NA \"Incomplete\" NA ... #>  $ event_datetime____1____follow1    : POSIXct[1:6], format: NA \"2024-01-18 12:49:42\" ... #>  $ event_datetime____1____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_age____1____follow1         : num [1:6] NA NA NA 96 127 NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____1____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_type____1____follow1        : 'labelled' chr [1:6] NA \"TIA\" \"AIS\" \"TIA\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____1____follow2        : 'labelled' chr [1:6] NA NA \"ICH\" \"AIS\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ new_event_complete____1____follow1: chr [1:6] NA \"Incomplete\" \"Incomplete\" \"Complete\" ... #>  $ new_event_complete____1____follow2: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... #>  $ event_datetime____2____follow1    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____2____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____3____follow1    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____3____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_age____2____follow1         : num [1:6] NA NA NA 105 127 NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____2____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____3____follow1         : num [1:6] NA NA NA NA NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____3____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_type____2____follow1        : 'labelled' chr [1:6] NA NA \"ICH\" \"TIA\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____2____follow2        : 'labelled' chr [1:6] NA NA \"TIA\" \"ICH\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____3____follow1        : 'labelled' chr [1:6] NA NA NA NA ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____3____follow2        : 'labelled' chr [1:6] NA NA \"AIS\" \"Unknown\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ new_event_complete____2____follow1: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... #>  $ new_event_complete____2____follow2: chr [1:6] NA NA \"Incomplete\" \"Incomplete\" ... #>  $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ... #>  $ new_event_complete____3____follow2: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... wide_data_suffixes <- wide_data |> suffix2label()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"creating-a-nice-table","dir":"Articles","previous_headings":"","what":"Creating a nice table","title":"REDCapCAST","text":"","code":"wide_data_suffixes |>    as_factor()|>   dplyr::select(sex, hypertension, diabetes,mrs_score____follow2) |>   gtsummary::tbl_summary(type = gtsummary::all_dichotomous() ~ \"categorical\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Paul Egeler. Author.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo , Egeler P (2024). REDCapCAST: REDCap Metadata Casting Castellated Data Handling. R package version 24.12.1, https://agdamsbo.github.io/REDCapCAST/, https://github.com/agdamsbo/REDCapCAST.","code":"@Manual{,   title = {REDCapCAST: REDCap Metadata Casting and Castellated Data Handling},   author = {Andreas Gammelgaard Damsbo and Paul Egeler},   year = {2024},   note = {R package version 24.12.1, https://agdamsbo.github.io/REDCapCAST/},   url = {https://github.com/agdamsbo/REDCapCAST}, }"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"redcapcast-package-","dir":"","previous_headings":"","what":"REDCap Metadata Casting and Castellated Data Handling","title":"REDCap Metadata Casting and Castellated Data Handling","text":"Casting metadata REDCap database creation handling castellated data using repeated instruments longitudinal projects REDCap. implemented app-interface easy database creation accessible available run locally shiny_cast() allowing easily create REDCap database based existing spreadsheet. Export data REDCap different formats handling castellated data, default export requested data, mainly read_redcap_tables(). REDCapCAST initially build , still includes code pegeler/REDCapRITS, relies functions REDCapR-project","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"history","dir":"","previous_headings":"","what":"History","title":"REDCap Metadata Casting and Castellated Data Handling","text":"package originally forked pegeler/REDCapRITS. REDCapRITS represents great extensive work handle castellated REDCap data different programming languages. REDCapCAST evolved much just handling castellated data detatched original project still relying main REDCap_split function. access REDCap database build outstanding work REDCapR. package really started frustration PhD health science hearing colleagues complaining “castellated” data formatting REDCap exports longitudinal projects used wide data. led bad decisions building databases avoiding repeated instruments. package solves challenges, solutions also implemented else like redcapAPI REDCapTidieR packages, bigger project. help new PhD students researchers, also worked creating helper/wrapper-functions ease data access. Documentation ’s way. advanced uses, consider using redcapAPI REDCapR packages.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"future","dir":"","previous_headings":"","what":"Future","title":"REDCap Metadata Casting and Castellated Data Handling","text":"plan package bundled Handbook working REDCap R. work progress limited time available. Please feel free contact create issue ideas future additions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"installation-and-use","dir":"","previous_headings":"","what":"Installation and use","title":"REDCap Metadata Casting and Castellated Data Handling","text":"package available CRAN. Install latest version: Install latest version directly GitHub: Launch REDCapCAST app interface directly machine:","code":"install.packages(\"REDCapCAST\") require(\"remotes\") remotes::install_github(\"agdamsbo/REDCapCAST\") REDCapCAST::shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"REDCap Metadata Casting and Castellated Data Handling","text":"Please note REDCapCAST project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCapCAST-package.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","title":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","text":"Casting metadata REDCap database creation handling castellated data using repeated instruments longitudinal projects 'REDCap'. Keeps focused data export approach, allowing export required data database. Also casting new REDCap databases based datasets sources. Originally forked R part 'REDCapRITS' Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) secure, web-based software platform designed support data capture research studies, providing 1) intuitive interface validated data capture; 2) audit trails tracking data manipulation export procedures; 3) automated export procedures seamless data downloads common statistical packages; 4) procedures data integration interoperability external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010 ; Harris et al (2019) doi:10.1016/j.jbi.2019.103208 ).","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCapCAST-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","text":"Maintainer: Andreas Gammelgaard Damsbo agdamsbo@clin.au.dk (ORCID) Authors: Paul Egeler paulegeler@gmail.com (ORCID)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Split REDCap repeating instruments table into multiple tables — REDCap_split","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"take output REDCap export split base table child tables repeating instrument. Metadata used determine fields included resultant table.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"REDCap_split(   records,   metadata,   primary_table_name = \"\",   forms = c(\"repeating\", \"all\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"records Exported project records. May data.frame, response, character vector containing JSON API call. metadata Project metadata (data dictionary). May data.frame, response, character vector containing JSON API call. primary_table_name Name given list element primary output table. Ignored forms = ''. forms Indicate whether create separate tables repeating instruments forms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"list \"data.frame\"s. number tables differ   depending forms option selected. 'repeating': one base table one     tables repeating instrument. '': data.frame instrument, regardless     whether repeating instrument .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"Paul W. Egeler","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"if (FALSE) { # \\dontrun{ # Using an API call -------------------------------------------------------  library(RCurl)  # Get the records records <- postForm(   uri = api_url, # Supply your site-specific URI   token = api_token, # Supply your own API token   content = \"record\",   format = \"json\",   returnFormat = \"json\" )  # Get the metadata metadata <- postForm(   uri = api_url, # Supply your site-specific URI   token = api_token, # Supply your own API token   content = \"metadata\",   format = \"json\" )  # Convert exported JSON strings into a list of data.frames REDCapCAST::REDCap_split(records, metadata)  # Using a raw data export -------------------------------------------------  # Get the records records <- read.csv(\"/path/to/data/ExampleProject_DATA_2018-06-03_1700.csv\")  # Get the metadata metadata <- read.csv(   \"/path/to/data/ExampleProject_DataDictionary_2018-06-03.csv\" )  # Split the tables REDCapCAST::REDCap_split(records, metadata)  # In conjunction with the R export script ---------------------------------  # You must set the working directory first since the REDCap data export # script contains relative file references. old <- getwd() setwd(\"/path/to/data/\")  # Run the data export script supplied by REDCap. # This will create a data.frame of your records called 'data' source(\"ExampleProject_R_2018-06-03_1700.r\")  # Get the metadatan metadata <- read.csv(\"ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapCAST::REDCap_split(data, metadata) setwd(old) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if vector is all NA — all_na","title":"Check if vector is all NA — all_na","text":"Check vector NA","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if vector is all NA — all_na","text":"","code":"all_na(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if vector is all NA — all_na","text":"data vector data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if vector is all NA — all_na","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if vector is all NA — all_na","text":"","code":"rep(NA, 4) |> all_na() #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"Preserve factor levels REDCap data dictionary data export","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"","code":"apply_factor_labels(data, meta = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"data REDCap exported data set meta REDCap data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Apply REDCap filed labels to data frame — apply_field_label","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"Apply REDCap filed labels data frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"","code":"apply_field_label(data, meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"data REDCap exported data set meta REDCap data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert labelled vectors to factors while preserving attributes — as_factor","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"extends as_factor well as_factor, appending original attributes except \"class\" converting factor avoid ta loss case rich formatted labelled data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"","code":"as_factor(x, ...)  # S3 method for class 'factor' as_factor(x, ...)  # S3 method for class 'logical' as_factor(x, ...)  # S3 method for class 'numeric' as_factor(x, ...)  # S3 method for class 'character' as_factor(x, ...)  # S3 method for class 'haven_labelled' as_factor(   x,   levels = c(\"default\", \"labels\", \"values\", \"both\"),   ordered = FALSE,   ... )  # S3 method for class 'labelled' as_factor(   x,   levels = c(\"default\", \"labels\", \"values\", \"both\"),   ordered = FALSE,   ... )  # S3 method for class 'data.frame' as_factor(x, ..., only_labelled = TRUE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"x Object coerce factor. ... arguments passed method. levels create levels generated factor: * \"default\": uses labels available, otherwise values.     Labels sorted value.   * \"\": like \"default\", pastes together level value   * \"label\": use labels; unlabelled values become `NA`   * \"values\": use values ordered `TRUE` create ordered (ordinal) factor, `FALSE` (default) create regular (nominal) factor. only_labelled apply labelled columns?","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"Please refer parent functions extended documentation. avoid redundancy calls errors, functions copy-pasted ","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"","code":"# will preserve all attributes c(1, 4, 3, \"A\", 7, 8, 1) |> as_factor() #> [1] 1 4 3 A 7 8 1 #> Levels: 1 4 3 A 7 8 structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10) ) |>   as_factor() |>   dput() #> structure(c(1L, 2L, 3L, 2L, 5L, 4L), levels = c(\"1\", \"2\", \"3\",  #> \"9\", \"10\"), class = \"factor\", labels = c(Unknown = 9, Refused = 10 #> ))  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() #> [1] 1       2       3       2       Refused Unknown #> attr(,\"labels\") #> Unknown Refused  #>       9      10  #> Levels: 1 2 3 Unknown Refused"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":null,"dir":"Reference","previous_headings":"","what":"List-base regex case_when — case_match_regex_list","title":"List-base regex case_when — case_match_regex_list","text":"Mimics case_when list regex patterns values. Used date/time validation generation name vector. Like case_when, matches order priority. Primarily used REDCapCAST data type coding systematic variable naming.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List-base regex case_when — case_match_regex_list","text":"","code":"case_match_regex_list(data, match.list, .default = NA)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List-base regex case_when — case_match_regex_list","text":"data vector match.list list case matches .default Default value non-matches. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List-base regex case_when — case_match_regex_list","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List-base regex case_when — case_match_regex_list","text":"","code":"case_match_regex_list(   c(\"test_date\", \"test_time\", \"test_tida\", \"test_tid\"),   list(date_dmy = \"_dat[eo]$\", time_hh_mm_ss = \"_ti[md]e?$\") ) #> [1] \"date_dmy\"      \"time_hh_mm_ss\" NA              \"time_hh_mm_ss\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":null,"dir":"Reference","previous_headings":"","what":"Overview of REDCapCAST data for shiny — cast_data_overview","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"Overview REDCapCAST data shiny","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"","code":"cast_data_overview(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"data list class 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"gt object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":null,"dir":"Reference","previous_headings":"","what":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"Overview REDCapCAST meta data shiny","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"","code":"cast_meta_overview(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"data list class 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"gt object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to generate REDCap choices from character vector — char2choice","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"Simple function generate REDCap choices character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"","code":"char2choice(data, char.split = \"/\", raw = NULL, .default = NA)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"data vector char.split splitting character(s) raw specific values. Can used options length. .default default value missing. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"","code":"char2choice(c(\"yes/no\",\"  yep. / nope  \",\"\",NA,\"what\"),.default=NA) #> [1] \"1, yes | 2, no\"    \"1, yep. | 2, nope\" NA                  #> [4] NA                  \"1, what\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to generate REDCap branching logic from character vector — char2cond","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"Simple function generate REDCap branching logic character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"","code":"char2cond(   data,   minor.split = \",\",   major.split = \";\",   major.sep = \" or \",   .default = NA )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"data vector minor.split minor split major.split major split major.sep argument separation. Default \" \". .default default value missing. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"","code":"#data <- dd_inst$betingelse #c(\"Extubation_novent, 2; Pacu_delay, 1\") |> char2cond()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"simple function remove rich text formatting field label save first paragraph ('<p>...<\/p>').","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"","code":"clean_field_label(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"data field label","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"","code":"clean_field_label(\"<div class=\\\"rich-text-field-label\\\"><p>Fazekas score<\/p><\/div>\") #> [1] \"Fazekas score\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":null,"dir":"Reference","previous_headings":"","what":"clean_redcap_name — clean_redcap_name","title":"clean_redcap_name — clean_redcap_name","text":"Stepwise removal non-alphanumeric characters, trailing white space, substitutes spaces underscores converts lower case. Trying make different naming conventions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"clean_redcap_name — clean_redcap_name","text":"","code":"clean_redcap_name(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"clean_redcap_name — clean_redcap_name","text":"x vector data frame cleaning","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"clean_redcap_name — clean_redcap_name","text":"vector data frame, format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":null,"dir":"Reference","previous_headings":"","what":"Compacting a vector of any length with or without names — compact_vec","title":"Compacting a vector of any length with or without names — compact_vec","text":"Compacting vector length without names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Compacting a vector of any length with or without names — compact_vec","text":"","code":"compact_vec(data, nm.sep = \": \", val.sep = \"; \")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Compacting a vector of any length with or without names — compact_vec","text":"data vector, optionally named nm.sep string separating name value val.sep string separating values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Compacting a vector of any length with or without names — compact_vec","text":"character string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Compacting a vector of any length with or without names — compact_vec","text":"","code":"sample(seq_len(4), 20, TRUE) |>   as_factor() |>   named_levels() |>   sort() |>   compact_vec() #> [1] \"1: 1; 2: 2; 3: 3; 4: 4\" 1:6 |> compact_vec() #> [1] \"1; 2; 3; 4; 5; 6\" \"test\" |> compact_vec() #> [1] \"test\" sample(letters[1:9], 20, TRUE) |> compact_vec() #> [1] \"g; e; e; b; f; d; b; c; i; f; g; e; f; i; f; e; b; a; d; h\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"Create two-column HTML table data piping REDCap instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"","code":"create_html_table(text, variable)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"text descriptive text variable variable pipe","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"","code":"create_html_table(text = \"Patient ID\", variable = c(\"[cpr]\")) #> <table style=\"border-collapse: collapse; width: 100%;\" border=\"0\"> <tbody><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">Patient ID<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><\/tbody> <\/table> create_html_table(text = paste(\"assessor\", 1:2, sep = \"_\"), variable = c(\"[cpr]\")) #> <table style=\"border-collapse: collapse; width: 100%;\" border=\"0\"> <tbody><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">assessor_1<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">assessor_2<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><\/tbody> <\/table> # create_html_table(text = c(\"CPR nummer\",\"Word\"), variable = c(\"[cpr][1]\", \"[cpr][2]\", \"[test]\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"Metadata can added editing data dictionary project initial design phase. want later add new instruments, function can used create () instrument(s) add project production.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"","code":"create_instrument_meta(data, dir = here::here(\"\"), record.id = TRUE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"data metadata relevant instrument. `ds2dd_detailed()` dir destination dir instrument zip. Default current WD. record.id flag omit first row data dictionary assuming record_id field included instrument. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"","code":"if (FALSE) { # \\dontrun{ data <- iris |>   ds2dd_detailed(     add.auto.id = TRUE,     form.name = sample(c(\"b\", \"c\"),       size = 6,       replace = TRUE, prob = rep(.5, 2)     )   ) |>   purrr::pluck(\"meta\") # data |> create_instrument_meta()  data <- iris |>   ds2dd_detailed(add.auto.id = FALSE) |>   purrr::pluck(\"data\") iris |>   setNames(glue::glue(\"{sample(x = c('a','b'),size = length(ncol(iris)), replace=TRUE,prob = rep(x=.5,2))}__{names(iris)}\")) |>   ds2dd_detailed(form.sep = \"__\") data |>   purrr::pluck(\"meta\") |>   create_instrument_meta(record.id = FALSE) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert single digits to words — d2w","title":"Convert single digits to words — d2w","text":"Convert single digits words","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert single digits to words — d2w","text":"","code":"d2w(x, lang = \"en\", neutrum = FALSE, everything = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert single digits to words — d2w","text":"x data. Handle vectors, data.frames lists lang language. Danish (da) English (en), Default \"en\" neutrum numbers depending counted word everything flag also split numbers >9 single digits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert single digits to words — d2w","text":"returns characters format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert single digits to words — d2w","text":"","code":"d2w(c(2:8, 21)) #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" \"21\"    d2w(data.frame(2:7, 3:8, 1), lang = \"da\", neutrum = TRUE) #>   X2.7 X3.8 X1 #> 1   to  tre et #> 2  tre fire et #> 3 fire  fem et #> 4  fem seks et #> 5 seks  syv et #> 6  syv otte et  ## If everything=T, also larger numbers are reduced. ## Elements in the list are same length as input d2w(list(2:8, c(2, 6, 4, 23), 2), everything = TRUE) #> [[1]] #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" #>  #> [[2]] #> [1] \"two\"       \"six\"       \"four\"      \"two three\" #>  #> [[3]] #> [1] \"two\" #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"Works well `project.aid::docx2list()`. Allows defining database text document (see provided template) easier use data base creation. approach allows easier collaboration defining database. generic case data frame variable names values column. format like REDCap data dictionary, gives options formatting.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"","code":"doc2dd(   data,   instrument.name,   col.variables = 1,   list.datetime.format = list(date_dmy = \"_dat[eo]$\", time_hh_mm_ss = \"_ti[md]e?$\"),   col.description = NULL,   col.condition = NULL,   col.subheader = NULL,   subheader.tag = \"h2\",   condition.minor.sep = \",\",   condition.major.sep = \";\",   col.calculation = NULL,   col.choices = NULL,   choices.char.sep = \"/\",   missing.default = NA )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"data tibble data.frame variable names one column instrument.name character vector length one. Instrument name. col.variables variable names column (default = 1), allows dplyr subsetting list.datetime.format formatting date/time detection. See `case_match_regex_list()` col.description descriptions column, allows dplyr subsetting. empty, variable names used. col.condition conditions branching column, allows dplyr subsetting. See `char2cond()`. col.subheader sub-header column, allows dplyr subsetting. See `format_subheader()`. subheader.tag formatting tag. Default \"h2\" condition.minor.sep condition split minor. See `char2cond()`. Default \",\". condition.major.sep condition split major. See `char2cond()`. Default \";\". col.calculation calculations column. written exact. Character vector. col.choices choices column. See `char2choice()`. choices.char.sep choices split. See `char2choice()`. Default \"/\". missing.default value missing fields. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"tibble data.frame (data)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"","code":"# data <- dd_inst # data |> doc2dd(instrument.name = \"evt\", # col.description = 3, # col.condition = 4, # col.subheader = 2, # col.calculation = 5, # col.choices = 6)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"(DEPRECATED) Data set to data dictionary function — ds2dd","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"Creates basic data dictionary skeleton. Please see `ds2dd_detailed()` advanced function.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE,   metadata = names(REDCapCAST::redcapcast_meta) )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload. metadata Metadata column names. Default included names(REDCapCAST::redcapcast_meta).","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"Migrated stRoke ds2dd(). Fits better functionality 'REDCapCAST'.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"","code":"redcapcast_data$record_id <- seq_len(nrow(redcapcast_data)) ds2dd(redcapcast_data, include.column.names=TRUE) #> $DataDictionary #>                      field_name form_name section_header field_type #> 1                     record_id     basis             NA       text #> 2             redcap_event_name     basis             NA       text #> 3      redcap_repeat_instrument     basis             NA       text #> 4        redcap_repeat_instance     basis             NA       text #> 5                           cpr     basis             NA       text #> 6                     inclusion     basis             NA       text #> 7                inclusion_time     basis             NA       text #> 8                           dob     basis             NA       text #> 9                           age     basis             NA       text #> 10                  age_integer     basis             NA       text #> 11                          sex     basis             NA       text #> 12                 cohabitation     basis             NA       text #> 13                 hypertension     basis             NA       text #> 14                     diabetes     basis             NA       text #> 15                       region     basis             NA       text #> 16 baseline_data_start_complete     basis             NA       text #> 17                 mrs_assessed     basis             NA       text #> 18                     mrs_date     basis             NA       text #> 19                    mrs_score     basis             NA       text #> 20                 mrs_complete     basis             NA       text #> 21                      con_mrs     basis             NA       text #> 22                     con_calc     basis             NA       text #> 23           consensus_complete     basis             NA       text #> 24               event_datetime     basis             NA       text #> 25                    event_age     basis             NA       text #> 26                   event_type     basis             NA       text #> 27           new_event_complete     basis             NA       text #>                     field_label select_choices_or_calculations field_note #> 1                     record_id                             NA         NA #> 2             redcap_event_name                             NA         NA #> 3      redcap_repeat_instrument                             NA         NA #> 4        redcap_repeat_instance                             NA         NA #> 5                           cpr                             NA         NA #> 6                     inclusion                             NA         NA #> 7                inclusion_time                             NA         NA #> 8                           dob                             NA         NA #> 9                           age                             NA         NA #> 10                  age_integer                             NA         NA #> 11                          sex                             NA         NA #> 12                 cohabitation                             NA         NA #> 13                 hypertension                             NA         NA #> 14                     diabetes                             NA         NA #> 15                       region                             NA         NA #> 16 baseline_data_start_complete                             NA         NA #> 17                 mrs_assessed                             NA         NA #> 18                     mrs_date                             NA         NA #> 19                    mrs_score                             NA         NA #> 20                 mrs_complete                             NA         NA #> 21                      con_mrs                             NA         NA #> 22                     con_calc                             NA         NA #> 23           consensus_complete                             NA         NA #> 24               event_datetime                             NA         NA #> 25                    event_age                             NA         NA #> 26                   event_type                             NA         NA #> 27           new_event_complete                             NA         NA #>    text_validation_type_or_show_slider_number text_validation_min #> 1                                          NA                  NA #> 2                                          NA                  NA #> 3                                          NA                  NA #> 4                                          NA                  NA #> 5                                          NA                  NA #> 6                                          NA                  NA #> 7                                          NA                  NA #> 8                                          NA                  NA #> 9                                          NA                  NA #> 10                                         NA                  NA #> 11                                         NA                  NA #> 12                                         NA                  NA #> 13                                         NA                  NA #> 14                                         NA                  NA #> 15                                         NA                  NA #> 16                                         NA                  NA #> 17                                         NA                  NA #> 18                                         NA                  NA #> 19                                         NA                  NA #> 20                                         NA                  NA #> 21                                         NA                  NA #> 22                                         NA                  NA #> 23                                         NA                  NA #> 24                                         NA                  NA #> 25                                         NA                  NA #> 26                                         NA                  NA #> 27                                         NA                  NA #>    text_validation_max identifier branching_logic required_field #> 1                   NA         NA              NA             NA #> 2                   NA         NA              NA             NA #> 3                   NA         NA              NA             NA #> 4                   NA         NA              NA             NA #> 5                   NA         NA              NA             NA #> 6                   NA         NA              NA             NA #> 7                   NA         NA              NA             NA #> 8                   NA         NA              NA             NA #> 9                   NA         NA              NA             NA #> 10                  NA         NA              NA             NA #> 11                  NA         NA              NA             NA #> 12                  NA         NA              NA             NA #> 13                  NA         NA              NA             NA #> 14                  NA         NA              NA             NA #> 15                  NA         NA              NA             NA #> 16                  NA         NA              NA             NA #> 17                  NA         NA              NA             NA #> 18                  NA         NA              NA             NA #> 19                  NA         NA              NA             NA #> 20                  NA         NA              NA             NA #> 21                  NA         NA              NA             NA #> 22                  NA         NA              NA             NA #> 23                  NA         NA              NA             NA #> 24                  NA         NA              NA             NA #> 25                  NA         NA              NA             NA #> 26                  NA         NA              NA             NA #> 27                  NA         NA              NA             NA #>    custom_alignment question_number matrix_group_name matrix_ranking #> 1                NA              NA                NA             NA #> 2                NA              NA                NA             NA #> 3                NA              NA                NA             NA #> 4                NA              NA                NA             NA #> 5                NA              NA                NA             NA #> 6                NA              NA                NA             NA #> 7                NA              NA                NA             NA #> 8                NA              NA                NA             NA #> 9                NA              NA                NA             NA #> 10               NA              NA                NA             NA #> 11               NA              NA                NA             NA #> 12               NA              NA                NA             NA #> 13               NA              NA                NA             NA #> 14               NA              NA                NA             NA #> 15               NA              NA                NA             NA #> 16               NA              NA                NA             NA #> 17               NA              NA                NA             NA #> 18               NA              NA                NA             NA #> 19               NA              NA                NA             NA #> 20               NA              NA                NA             NA #> 21               NA              NA                NA             NA #> 22               NA              NA                NA             NA #> 23               NA              NA                NA             NA #> 24               NA              NA                NA             NA #> 25               NA              NA                NA             NA #> 26               NA              NA                NA             NA #> 27               NA              NA                NA             NA #>    field_annotation #> 1                NA #> 2                NA #> 3                NA #> 4                NA #> 5                NA #> 6                NA #> 7                NA #> 8                NA #> 9                NA #> 10               NA #> 11               NA #> 12               NA #> 13               NA #> 14               NA #> 15               NA #> 16               NA #> 17               NA #> 18               NA #> 19               NA #> 20               NA #> 21               NA #> 22               NA #> 23               NA #> 24               NA #> 25               NA #> 26               NA #> 27               NA #>  #> $`Column names` #>  [1] \"record_id\"                    \"redcap_event_name\"            #>  [3] \"redcap_repeat_instrument\"     \"redcap_repeat_instance\"       #>  [5] \"cpr\"                          \"inclusion\"                    #>  [7] \"inclusion_time\"               \"dob\"                          #>  [9] \"age\"                          \"age_integer\"                  #> [11] \"sex\"                          \"cohabitation\"                 #> [13] \"hypertension\"                 \"diabetes\"                     #> [15] \"region\"                       \"baseline_data_start_complete\" #> [17] \"mrs_assessed\"                 \"mrs_date\"                     #> [19] \"mrs_score\"                    \"mrs_complete\"                 #> [21] \"con_mrs\"                      \"con_calc\"                     #> [23] \"consensus_complete\"           \"event_datetime\"               #> [25] \"event_age\"                    \"event_type\"                   #> [27] \"new_event_complete\"           #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract data from stata file for data dictionary — ds2dd_detailed","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"Extract data stata file data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"","code":"ds2dd_detailed(   data,   add.auto.id = FALSE,   date.format = \"dmy\",   form.name = NULL,   form.sep = NULL,   form.prefix = TRUE,   field.type = NULL,   field.label = NULL,   field.label.attr = \"label\",   field.validation = NULL,   metadata = names(REDCapCAST::redcapcast_meta),   convert.logicals = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"data data frame add.auto.id flag add id column date.format date format, character string. ymd/dmy/mdy. dafault dmy. form.name manually specify form name(s). Vector length 1 ncol(data). Default NULL \"data\" used. form.sep supplied dataset form names suffix prefix column/variable names, seperator can specified. supplied, form.name ignored. Default NULL. form.prefix Flag set form prefix (TRUE) suffix (FALSE) column names. Assumes columns pre- suffix specified. field.type manually specify field type(s). Vector length 1 ncol(data). Default NULL \"text\" used everything factors, wil get \"radio\". field.label manually specify field label(s). Vector length 1 ncol(data). Default NULL colnames(data) used attribute `field.label.attr` haven_labelled data set (imported .dta file `haven::read_dta()`). field.label.attr attribute name named labels haven_labelled data set (imported .dta file `haven::read_dta()`. Default \"label\" field.validation manually specify field validation(s). Vector length 1 ncol(data). Default NULL `levels()` used factors attribute `factor.labels.attr` haven_labelled data set (imported .dta file `haven::read_dta()`). metadata redcap metadata headings. Default names(REDCapCAST::redcapcast_meta). convert.logicals convert logicals factor. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"list length 2","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"function natural development ds2dd() function. assumes first column ID-column. checks. Please, always inspect data dictionary upload. Ensure, data set formatted much information possible. `field.type` can supplied","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"","code":"## Basic parsing with default options requireNamespace(\"REDCapCAST\") redcapcast_data |>   dplyr::select(-dplyr::starts_with(\"redcap_\")) |>   ds2dd_detailed() #> $data #> # A tibble: 25 × 24 #>    record_id cpr    inclusion  inclusion_time dob          age age_integer sex   #>        <dbl> <chr>  <date>     <chr>          <date>     <dbl>       <dbl> <chr> #>  1         1 12034… 2023-03-13 12:38:49       1940-03-12  83.0          83 fema… #>  2         2 01023… 2023-03-01 10:38:57       1934-02-01  89.1          89 male  #>  3         2 NA     NA         NA             NA          NA            NA NA    #>  4         2 NA     NA         NA             NA          NA            NA NA    #>  5         3 23015… 2022-03-08 12:01:07       1956-01-23  66.1          66 male  #>  6         3 NA     NA         NA             NA          NA            NA NA    #>  7         3 NA     NA         NA             NA          NA            NA NA    #>  8         3 NA     NA         NA             NA          NA            NA NA    #>  9         3 NA     NA         NA             NA          NA            NA NA    #> 10         3 NA     NA         NA             NA          NA            NA NA    #> # ℹ 15 more rows #> # ℹ 16 more variables: cohabitation <chr>, hypertension <chr>, diabetes <chr>, #> #   region <chr>, baseline_data_start_complete <chr>, mrs_assessed <chr>, #> #   mrs_date <date>, mrs_score <dbl>, mrs_complete <chr>, con_mrs <fct>, #> #   con_calc <fct>, consensus_complete <chr>, event_datetime <dttm>, #> #   event_age <dbl>, event_type <chr>, new_event_complete <chr> #>  #> $meta #> # A tibble: 24 × 18 #>    field_name     form_name section_header field_type field_label    #>    <chr>          <chr>     <lgl>          <chr>      <chr>          #>  1 record_id      data      NA             text       record_id      #>  2 cpr            data      NA             text       cpr            #>  3 inclusion      data      NA             text       inclusion      #>  4 inclusion_time data      NA             text       inclusion_time #>  5 dob            data      NA             text       dob            #>  6 age            data      NA             text       age            #>  7 age_integer    data      NA             text       age_integer    #>  8 sex            data      NA             text       sex            #>  9 cohabitation   data      NA             text       cohabitation   #> 10 hypertension   data      NA             text       hypertension   #> # ℹ 14 more rows #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Adding a record_id field iris |> ds2dd_detailed(add.auto.id = TRUE) #> $data #> # A tibble: 150 × 6 #>    record_id sepal.length sepal.width petal.length petal.width species #>        <int>        <dbl>       <dbl>        <dbl>       <dbl> <fct>   #>  1         1          5.1         3.5          1.4         0.2 setosa  #>  2         2          4.9         3            1.4         0.2 setosa  #>  3         3          4.7         3.2          1.3         0.2 setosa  #>  4         4          4.6         3.1          1.5         0.2 setosa  #>  5         5          5           3.6          1.4         0.2 setosa  #>  6         6          5.4         3.9          1.7         0.4 setosa  #>  7         7          4.6         3.4          1.4         0.3 setosa  #>  8         8          5           3.4          1.5         0.2 setosa  #>  9         9          4.4         2.9          1.4         0.2 setosa  #> 10        10          4.9         3.1          1.5         0.1 setosa  #> # ℹ 140 more rows #>  #> $meta #> # A tibble: 6 × 18 #>   field_name   form_name section_header field_type field_label  #>   <chr>        <chr>     <lgl>          <chr>      <chr>        #> 1 record_id    data      NA             text       record_id    #> 2 sepal.length data      NA             text       Sepal.Length #> 3 sepal.width  data      NA             text       Sepal.Width  #> 4 petal.length data      NA             text       Petal.Length #> 5 petal.width  data      NA             text       Petal.Width  #> 6 species      data      NA             radio      Species      #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Passing form name information to function iris |>   ds2dd_detailed(     add.auto.id = TRUE,     form.name = sample(c(\"b\", \"c\"), size = 6, replace = TRUE, prob = rep(.5, 2))   ) |>   purrr::pluck(\"meta\") #> # A tibble: 6 × 18 #>   field_name   form_name section_header field_type field_label  #>   <chr>        <chr>     <lgl>          <chr>      <chr>        #> 1 record_id    b         NA             text       record_id    #> 2 sepal.length c         NA             text       Sepal.Length #> 3 sepal.width  b         NA             text       Sepal.Width  #> 4 petal.length c         NA             text       Petal.Length #> 5 petal.width  b         NA             text       Petal.Width  #> 6 species      c         NA             radio      Species      #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> mtcars |> ds2dd_detailed(add.auto.id = TRUE) #> $data #> # A tibble: 32 × 12 #>    record_id   mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb #>        <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1         1  21       6  160    110  3.9   2.62  16.5     0     1     4     4 #>  2         2  21       6  160    110  3.9   2.88  17.0     0     1     4     4 #>  3         3  22.8     4  108     93  3.85  2.32  18.6     1     1     4     1 #>  4         4  21.4     6  258    110  3.08  3.22  19.4     1     0     3     1 #>  5         5  18.7     8  360    175  3.15  3.44  17.0     0     0     3     2 #>  6         6  18.1     6  225    105  2.76  3.46  20.2     1     0     3     1 #>  7         7  14.3     8  360    245  3.21  3.57  15.8     0     0     3     4 #>  8         8  24.4     4  147.    62  3.69  3.19  20       1     0     4     2 #>  9         9  22.8     4  141.    95  3.92  3.15  22.9     1     0     4     2 #> 10        10  19.2     6  168.   123  3.92  3.44  18.3     1     0     4     4 #> # ℹ 22 more rows #>  #> $meta #> # A tibble: 12 × 18 #>    field_name form_name section_header field_type field_label #>    <chr>      <chr>     <lgl>          <chr>      <chr>       #>  1 record_id  data      NA             text       record_id   #>  2 mpg        data      NA             text       mpg         #>  3 cyl        data      NA             text       cyl         #>  4 disp       data      NA             text       disp        #>  5 hp         data      NA             text       hp          #>  6 drat       data      NA             text       drat        #>  7 wt         data      NA             text       wt          #>  8 qsec       data      NA             text       qsec        #>  9 vs         data      NA             text       vs          #> 10 am         data      NA             text       am          #> 11 gear       data      NA             text       gear        #> 12 carb       data      NA             text       carb        #> # ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Using column name suffix to carry form name data <- iris |>   ds2dd_detailed(add.auto.id = TRUE) |>   purrr::pluck(\"data\") names(data) <- glue::glue(\"{sample(x = c('a','b'),size = length(names(data)), replace=TRUE,prob = rep(x=.5,2))}__{names(data)}\") data |> ds2dd_detailed(form.sep = \"__\") #> $data #> # A tibble: 150 × 6 #>    record_id sepal.length sepal.width petal.length petal.width species #>        <int>        <dbl>       <dbl>        <dbl>       <dbl> <fct>   #>  1         1          5.1         3.5          1.4         0.2 setosa  #>  2         2          4.9         3            1.4         0.2 setosa  #>  3         3          4.7         3.2          1.3         0.2 setosa  #>  4         4          4.6         3.1          1.5         0.2 setosa  #>  5         5          5           3.6          1.4         0.2 setosa  #>  6         6          5.4         3.9          1.7         0.4 setosa  #>  7         7          4.6         3.4          1.4         0.3 setosa  #>  8         8          5           3.4          1.5         0.2 setosa  #>  9         9          4.4         2.9          1.4         0.2 setosa  #> 10        10          4.9         3.1          1.5         0.1 setosa  #> # ℹ 140 more rows #>  #> $meta #> # A tibble: 6 × 18 #>   field_name   form_name section_header field_type field_label  #>   <chr>        <chr>     <lgl>          <chr>      <chr>        #> 1 record_id    b         NA             text       record_id    #> 2 sepal.length a         NA             text       sepal.length #> 3 sepal.width  b         NA             text       sepal.width  #> 4 petal.length a         NA             text       petal.length #> 5 petal.width  b         NA             text       petal.width  #> 6 species      a         NA             radio      species      #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"Secure API key storage and data acquisition in one — easy_redcap","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"Secure API key storage data acquisition one","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"easy_redcap(project.name, widen.data = TRUE, uri, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"project.name name current project (key storage key_set, using default keyring) widen.data argument widen exported data uri REDCap database API uri ... arguments passed read_redcap_tables.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"data.frame list depending widen.data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"if (FALSE) { # \\dontrun{ easy_redcap(\"My_new_project\",fields=c(\"record_id\",\"age\",\"hypertension\")) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"Metadata can added editing data dictionary project initial design phase. want later add new instruments, function can used create () instrument(s) add project production.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"","code":"export_redcap_instrument(data, file, force = FALSE, record.id = \"record_id\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"data metadata relevant instrument. `ds2dd_detailed()` file destination file name. force force instrument creation ignore different form names just using first. record.id record id variable name. Default 'record_id'.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"exports zip-file","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"","code":"# iris |> #  ds2dd_detailed( #    add.auto.id = TRUE, #    form.name = sample(c(\"b\", \"c\"), size = 6, replace = TRUE, prob = rep(.5, 2)) #  ) |> #  purrr::pluck(\"meta\") |> #  (\\(.x){ #  split(.x, .x$form_name) #  })() |> #  purrr::imap(function(.x, .i){ #  export_redcap_instrument(.x,file=here::here(paste0(.i,Sys.Date(),\".zip\"))) #  })  # iris |> #  ds2dd_detailed( #    add.auto.id = TRUE #  ) |> #  purrr::pluck(\"meta\") |> #  export_redcap_instrument(file=here::here(paste0(\"instrument\",Sys.Date(),\".zip\")))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":null,"dir":"Reference","previous_headings":"","what":"Allows conversion of factor to numeric values preserving original levels — fct2num","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"Allows conversion factor numeric values preserving original levels","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"","code":"fct2num(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"","code":"c(1, 4, 3, \"A\", 7, 8, 1) |>   as_factor() |>   fct2num() #> [1] 1 2 3 4 5 6 1  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 10  9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"labelled\" ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 10  9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10) ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 NA NA"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop unused levels preserving label data — fct_drop","title":"Drop unused levels preserving label data — fct_drop","text":"extends [forcats::fct_drop()] natively work across data.frame replaces [base::droplevels()].","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop unused levels preserving label data — fct_drop","text":"","code":"fct_drop(x, ...)  # S3 method for class 'data.frame' fct_drop(x, ...)  # S3 method for class 'factor' fct_drop(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop unused levels preserving label data — fct_drop","text":"x Factor drop unused levels ... arguments passed method.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Drop unused levels preserving label data — fct_drop","text":"","code":"mtcars |>   numchar2fct() |>   fct_drop() #> # A tibble: 32 × 11 #>      mpg cyl    disp    hp  drat    wt  qsec vs    am    gear  carb  #>    <dbl> <fct> <dbl> <dbl> <dbl> <dbl> <dbl> <fct> <fct> <fct> <fct> #>  1  21   6      160    110  3.9   2.62  16.5 0     1     4     4     #>  2  21   6      160    110  3.9   2.88  17.0 0     1     4     4     #>  3  22.8 4      108     93  3.85  2.32  18.6 1     1     4     1     #>  4  21.4 6      258    110  3.08  3.22  19.4 1     0     3     1     #>  5  18.7 8      360    175  3.15  3.44  17.0 0     0     3     2     #>  6  18.1 6      225    105  2.76  3.46  20.2 1     0     3     1     #>  7  14.3 8      360    245  3.21  3.57  15.8 0     0     3     4     #>  8  24.4 4      147.    62  3.69  3.19  20   1     0     4     2     #>  9  22.8 4      141.    95  3.92  3.15  22.9 1     0     4     2     #> 10  19.2 6      168.   123  3.92  3.44  18.3 1     0     4     4     #> # ℹ 22 more rows mtcars |>   numchar2fct() |>   dplyr::mutate(vs = fct_drop(vs)) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":null,"dir":"Reference","previous_headings":"","what":"DEPRECATED Helper to import files correctly — file_extension","title":"DEPRECATED Helper to import files correctly — file_extension","text":"DEPRECATED Helper import files correctly","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DEPRECATED Helper to import files correctly — file_extension","text":"","code":"file_extension(filenames)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"DEPRECATED Helper to import files correctly — file_extension","text":"filenames file names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"DEPRECATED Helper to import files correctly — file_extension","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DEPRECATED Helper to import files correctly — file_extension","text":"","code":"file_extension(list.files(here::here(\"\"))[[2]])[[1]] #> [1] \"\" file_extension(c(\"file.cd..ks\", \"file\")) #> [1] \"ks\" \"\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":null,"dir":"Reference","previous_headings":"","what":"focused_metadata — focused_metadata","title":"focused_metadata — focused_metadata","text":"Extracts limited metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"focused_metadata — focused_metadata","text":"","code":"focused_metadata(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"focused_metadata — focused_metadata","text":"metadata dataframe containing metadata vars_in_data Vector variable names dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"focused_metadata — focused_metadata","text":"dataframe containing metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"Applying as_factor data.frame variable, coerce factor.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"","code":"format_redcap_factor(data, meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"data vector meta vector REDCap choices","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"vector class \"labelled\" \"labels\" attribute","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"","code":"format_redcap_factor(sample(1:3,20,TRUE),\"1, First. | 2, second | 3, THIRD\") #>  [1] 1 3 3 2 3 2 3 2 3 2 2 1 3 2 2 3 1 2 1 1 #> attr(,\"labels\") #> First. second  THIRD  #>    \"1\"    \"2\"    \"3\"  #> attr(,\"class\") #> [1] \"labelled\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":null,"dir":"Reference","previous_headings":"","what":"Sub-header formatting wrapper — format_subheader","title":"Sub-header formatting wrapper — format_subheader","text":"Sub-header formatting wrapper","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sub-header formatting wrapper — format_subheader","text":"","code":"format_subheader(data, tag = \"h2\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sub-header formatting wrapper — format_subheader","text":"data character vector tag character vector length 1","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sub-header formatting wrapper — format_subheader","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Sub-header formatting wrapper — format_subheader","text":"","code":"\"Instrument header\" |> format_subheader() #> <div class=\"rich-text-field-label\"><h2>Instrument header<\/h2><\/div>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":null,"dir":"Reference","previous_headings":"","what":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"Attempting make secure API key storage simple, way makes sense. Wrapping key_get key_set using key_list check key storage already.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"","code":"get_api_key(key.name, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"key.name character vector key name ... passed key_set","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract attribute. Returns NA if none — get_attr","title":"Extract attribute. Returns NA if none — get_attr","text":"Extract attribute. Returns NA none","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract attribute. Returns NA if none — get_attr","text":"","code":"get_attr(data, attr = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract attribute. Returns NA if none — get_attr","text":"data vector attr attribute name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract attribute. Returns NA if none — get_attr","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extract attribute. Returns NA if none — get_attr","text":"","code":"attr(mtcars$mpg, \"label\") <- \"testing\" do.call(c, sapply(mtcars, get_attr)) #> $mpg.label #> [1] \"testing\" #>  if (FALSE) { # \\dontrun{ mtcars |>   numchar2fct(numeric.threshold = 6) |>   ds2dd_detailed() } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the id name — get_id_name","title":"Get the id name — get_id_name","text":"Get id name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the id name — get_id_name","text":"","code":"get_id_name(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the id name — get_id_name","text":"data data frame list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the id name — get_id_name","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":null,"dir":"Reference","previous_headings":"","what":"Guess time variables based on naming pattern — guess_time_only","title":"Guess time variables based on naming pattern — guess_time_only","text":"repairing data time variables appended \"1970-01-01\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Guess time variables based on naming pattern — guess_time_only","text":"","code":"guess_time_only(   data,   validate.time = FALSE,   time.var.sel.pos = \"[Tt]i[d(me)]\",   time.var.sel.neg = \"[Dd]at[eo]\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Guess time variables based on naming pattern — guess_time_only","text":"data data.frame tibble validate.time Flag validate guessed time columns time.var.sel.pos Positive selection regex string passed `gues_time_only_filter()` sel.pos. time.var.sel.neg Negative selection regex string passed `gues_time_only_filter()` sel.neg.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Guess time variables based on naming pattern — guess_time_only","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Guess time variables based on naming pattern — guess_time_only","text":"","code":"redcapcast_data |> guess_time_only(validate.time = TRUE) #> $is.POSIX #> # A tibble: 25 × 2 #>    inclusion_time event_datetime      #>    <time>         <dttm>              #>  1 12:38:49       NA                  #>  2 10:38:57       NA                  #>  3       NA       NA                  #>  4       NA       2024-01-18 12:49:42 #>  5 12:01:07       NA                  #>  6       NA       NA                  #>  7       NA       NA                  #>  8       NA       2024-01-18 12:49:58 #>  9       NA       2024-01-18 12:50:01 #> 10       NA       2024-01-18 12:50:05 #> # ℹ 15 more rows #>  #> $is.datetime #> # A tibble: 25 × 1 #>    event_datetime      #>    <dttm>              #>  1 NA                  #>  2 NA                  #>  3 NA                  #>  4 2024-01-18 12:49:42 #>  5 NA                  #>  6 NA                  #>  7 NA                  #>  8 2024-01-18 12:49:58 #>  9 2024-01-18 12:50:01 #> 10 2024-01-18 12:50:05 #> # ℹ 15 more rows #>  #> $is.time_only #> # A tibble: 25 × 1 #>    inclusion_time #>    <time>         #>  1 12:38:49       #>  2 10:38:57       #>  3       NA       #>  4       NA       #>  5 12:01:07       #>  6       NA       #>  7       NA       #>  8       NA       #>  9       NA       #> 10       NA       #> # ℹ 15 more rows #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Try at determining which are true time only variables — guess_time_only_filter","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"just try guessing data type based data class column names hoping tiny bit naming consistency. R include time-data format natively, \"hms\" class `readr` used. converted character class REDCap upload.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"","code":"guess_time_only_filter(   data,   validate = FALSE,   sel.pos = \"[Tt]i[d(me)]\",   sel.neg = \"[Dd]at[eo]\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"data data set validate flag output validation data. output list. sel.pos Positive selection regex string sel.neg Negative selection regex string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"character vector list depending `validate` flag.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"","code":"data <- redcapcast_data data |> guess_time_only_filter() #> [1] \"inclusion_time\" data |>   guess_time_only_filter(validate = TRUE) |>   lapply(head) #> $is.POSIX #> # A tibble: 6 × 2 #>   inclusion_time event_datetime      #>   <time>         <dttm>              #> 1 12:38:49       NA                  #> 2 10:38:57       NA                  #> 3       NA       NA                  #> 4       NA       2024-01-18 12:49:42 #> 5 12:01:07       NA                  #> 6       NA       NA                  #>  #> $is.datetime #> # A tibble: 6 × 1 #>   event_datetime      #>   <dttm>              #> 1 NA                  #> 2 NA                  #> 3 NA                  #> 4 2024-01-18 12:49:42 #> 5 NA                  #> 6 NA                  #>  #> $is.time_only #> # A tibble: 6 × 1 #>   inclusion_time #>   <time>         #> 1 12:38:49       #> 2 10:38:57       #> 3       NA       #> 4       NA       #> 5 12:01:07       #> 6       NA       #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":null,"dir":"Reference","previous_headings":"","what":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"Finish incomplete haven attributes substituting missings values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"","code":"haven_all_levels(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"data haven labelled variable","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"","code":"ds <- structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) haven::is.labelled(ds) #> [1] TRUE attributes(ds) #> $labels #> Unknown Refused  #>       9      10  #>  #> $class #> [1] \"haven_labelled\" #>  ds |> haven_all_levels() #>       1       2       3 Unknown Refused  #>       1       2       3       9      10"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":null,"dir":"Reference","previous_headings":"","what":"Change ","title":"Change ","text":"Change \"hms\" \"character\" REDCap upload.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Change ","text":"","code":"hms2character(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Change ","text":"data data set","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Change ","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Change ","text":"","code":"data <- redcapcast_data ## data |> time_only_correction() |> hms2character()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"Simple html tag wrapping REDCap text formatting","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"","code":"html_tag_wrap(data, tag = \"h2\", extra = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"data character vector tag character vector length 1 extra character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"","code":"html_tag_wrap(\"Titel\", tag = \"div\", extra = 'class=\"rich-text-field-label\"') #> <div class=\"rich-text-field-label\">Titel<\/div> html_tag_wrap(\"Titel\", tag = \"h2\") #> <h2>Titel<\/h2>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests for multiple label classes — is.labelled","title":"Tests for multiple label classes — is.labelled","text":"Tests multiple label classes","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests for multiple label classes — is.labelled","text":"","code":"is.labelled(x, classes = c(\"haven_labelled\", \"labelled\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests for multiple label classes — is.labelled","text":"x data classes classes test","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tests for multiple label classes — is.labelled","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests for multiple label classes — is.labelled","text":"","code":"structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |> is.labelled() #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":null,"dir":"Reference","previous_headings":"","what":"Multi missing check — is_missing","title":"Multi missing check — is_missing","text":"Multi missing check","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Multi missing check — is_missing","text":"","code":"is_missing(data, nas = c(\"\", \"NA\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Multi missing check — is_missing","text":"data character vector nas character vector strings considered NA","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Multi missing check — is_missing","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if repeatable or longitudinal — is_repeated_longitudinal","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"Test repeatable longitudinal","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"","code":"is_repeated_longitudinal(   data,   generics = c(\"redcap_event_name\", \"redcap_repeat_instrument\", \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"data data set generics default \"redcap_event_name\", \"redcap_repeat_instrument\" \"redcap_repeat_instance\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"","code":"is_repeated_longitudinal(c(\"record_id\", \"age\", \"record_id\", \"gender\")) #> [1] FALSE is_repeated_longitudinal(redcapcast_data) #> [1] TRUE is_repeated_longitudinal(list(redcapcast_data)) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":null,"dir":"Reference","previous_headings":"","what":"Completion marking based on completed upload — mark_complete","title":"Completion marking based on completed upload — mark_complete","text":"Completion marking based completed upload","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Completion marking based on completed upload — mark_complete","text":"","code":"mark_complete(upload, ls)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Completion marking based on completed upload — mark_complete","text":"upload output list `REDCapR::redcap_write()` ls output list `ds2dd_detailed()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Completion marking based on completed upload — mark_complete","text":"list `REDCapR::redcap_write()` results","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":null,"dir":"Reference","previous_headings":"","what":"Match fields to forms — match_fields_to_form","title":"Match fields to forms — match_fields_to_form","text":"Match fields forms","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match fields to forms — match_fields_to_form","text":"","code":"match_fields_to_form(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match fields to forms — match_fields_to_form","text":"metadata data frame containing field names form names vars_in_data character vector variable names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match fields to forms — match_fields_to_form","text":"data frame containing field names form names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"mtcars dataset slightly modified use Shiny app upload demonstration","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"","code":"data(mtcars_redcap)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"data frame 13 variables: record_id ID, numeric mpg ID, numeric cyl ID, numeric disp ID, numeric hp ID, numeric drat ID, numeric wt ID, numeric qsec ID, numeric vs ID, numeric ID, numeric gear ID, numeric carb ID, numeric name original rownames, charater","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":null,"dir":"Reference","previous_headings":"","what":"Get named vector of factor levels and values — named_levels","title":"Get named vector of factor levels and values — named_levels","text":"Get named vector factor levels values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get named vector of factor levels and values — named_levels","text":"","code":"named_levels(   data,   label = \"labels\",   na.label = NULL,   na.value = 99,   sort.numeric = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get named vector of factor levels and values — named_levels","text":"data factor label character string attribute named vector factor labels na.label character string refactor NA values. Default NULL. na.value new value NA strings. Ignored na.label NULL. Default 99. sort.numeric sort factor levels levels numeric. Default TRUE","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get named vector of factor levels and values — named_levels","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get named vector of factor levels and values — named_levels","text":"","code":"structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() |>   named_levels() #>       1       2       3 Refused Unknown  #>       1       2       3      10       9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"labelled\" ) |>   as_factor() |>   named_levels() #>       1       2       3 Refused Unknown  #>       1       2       3      10       9"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":null,"dir":"Reference","previous_headings":"","what":"Nav_bar defining function for shiny ui — nav_bar_page","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"Nav_bar defining function shiny ui","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"","code":"nav_bar_page()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"shiny object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":null,"dir":"Reference","previous_headings":"","what":"Applying var2fct across data set — numchar2fct","title":"Applying var2fct across data set — numchar2fct","text":"Individual thresholds character numeric columns","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Applying var2fct across data set — numchar2fct","text":"","code":"numchar2fct(data, numeric.threshold = 6, character.throshold = 6)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Applying var2fct across data set — numchar2fct","text":"data dataset. data.frame tibble numeric.threshold threshold var2fct numeric columns. Default 6. character.throshold threshold var2fct character columns. Default 6.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Applying var2fct across data set — numchar2fct","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Applying var2fct across data set — numchar2fct","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... if (FALSE) { # \\dontrun{ mtcars |>   numchar2fct(numeric.threshold = 6) |>   str() } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper to auto-parse un-formatted data with haven and readr — parse_data","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"Helper auto-parse un-formatted data haven readr","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"","code":"parse_data(   data,   guess_type = TRUE,   col_types = NULL,   locale = readr::default_locale(),   ignore.vars = \"cpr\",   ... )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"data data.frame tibble guess_type logical guess type readr col_types specify col_types using readr semantics. Ignored guess_type TRUE locale option specify locale. Defaults readr::default_locale(). ignore.vars specify column names columns ignore parsing ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"","code":"mtcars |>   parse_data() |>   str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"Tests vector can interpreted numeric without introducing NAs coercion","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"","code":"possibly_numeric(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"","code":"c(\"1\",\"5\") |> possibly_numeric() #> [1] TRUE c(\"1\",\"5\",\"e\") |> possibly_numeric() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if vector can be interpreted as roman numerals — possibly_roman","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"Test vector can interpreted roman numerals","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"","code":"possibly_roman(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"data character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"","code":"sample(1:100, 10) |>   as.roman() |>   possibly_roman() #> [1] TRUE sample(c(TRUE, FALSE), 10, TRUE) |> possibly_roman() #> [1] FALSE rep(NA, 10) |> possibly_roman() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing character — process_user_input.character","title":"User input processing character — process_user_input.character","text":"User input processing character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing character — process_user_input.character","text":"","code":"# S3 method for class 'character' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing character — process_user_input.character","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing character — process_user_input.character","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing data.frame — process_user_input.data.frame","title":"User input processing data.frame — process_user_input.data.frame","text":"User input processing data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing data.frame — process_user_input.data.frame","text":"","code":"# S3 method for class 'data.frame' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing data.frame — process_user_input.data.frame","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing data.frame — process_user_input.data.frame","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing default — process_user_input.default","title":"User input processing default — process_user_input.default","text":"User input processing default","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing default — process_user_input.default","text":"","code":"# Default S3 method process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing default — process_user_input.default","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing default — process_user_input.default","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing — process_user_input","title":"User input processing — process_user_input","text":"User input processing","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing — process_user_input","text":"","code":"process_user_input(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing — process_user_input","text":"x input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing — process_user_input","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing response — process_user_input.response","title":"User input processing response — process_user_input.response","text":"User input processing response","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing response — process_user_input.response","text":"","code":"# S3 method for class 'response' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing response — process_user_input.response","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing response — process_user_input.response","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":null,"dir":"Reference","previous_headings":"","what":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"Convenience function download complete instrument, using token storage keyring.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"","code":"read_redcap_instrument(   key,   uri,   instrument,   raw_or_label = \"raw\",   id_name = \"record_id\",   records = NULL )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"key key name standard keyring token retrieval. uri REDCap database API uri instrument instrument name raw_or_label raw label passed `REDCapR::redcap_read()` id_name id variable name. Default \"record_id\". records specify records download. Index numbers. Numeric vector.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":null,"dir":"Reference","previous_headings":"","what":"Download REDCap data — read_redcap_tables","title":"Download REDCap data — read_redcap_tables","text":"Implementation passed REDCap_split focused data acquisition approach using passed redcap_read downloading specified fields, forms /events using built-focused_metadata including clean-. Works classical longitudinal projects without repeating instruments. preserve metadata data.frames labels.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download REDCap data — read_redcap_tables","text":"","code":"read_redcap_tables(   uri,   token,   records = NULL,   fields = NULL,   events = NULL,   forms = NULL,   raw_or_label = c(\"raw\", \"label\", \"both\"),   split_forms = \"all\",   ... )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download REDCap data — read_redcap_tables","text":"uri REDCap database API uri token API token records records download fields fields download events events download forms forms download raw_or_label raw label tags. Can \"raw\", \"label\" \"\". * \"raw\": Standard redcap_read method get raw values.   * \"label\": Standard redcap_read method get label values.   * \"\": Get raw values REDCap labels applied labels. Use   as_factor format factors original labels use    `gtsummary` package functions like tbl_summary   easily get beautiful tables original labels REDCap. Use   fct_drop drop empty levels. split_forms Whether split \"repeating\" \"\" forms, default . ... passed redcap_read","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download REDCap data — read_redcap_tables","text":"list instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download REDCap data — read_redcap_tables","text":"","code":"# Examples will be provided later"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":null,"dir":"Reference","previous_headings":"","what":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"Converts list REDCap data.frames long wide format. essence wrapper pivot_wider function applied REDCap output (read_redcap_tables) manually split REDCap_split.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"","code":"redcap_wider(   data,   event.glue = \"{.value}____{redcap_event_name}\",   inst.glue = \"{.value}____{redcap_repeat_instance}\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"data list data frames event.glue glue string repeated events naming inst.glue glue string repeated instruments naming","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"data.frame wide format","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"","code":"# Longitudinal list1 <- list(   data.frame(     record_id = c(1, 2, 1, 2),     redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"),     age = c(25, 26, 27, 28)   ),   data.frame(     record_id = c(1, 2),     redcap_event_name = c(\"baseline\", \"baseline\"),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list1) #> Joining with `by = join_by(record_id)` #> # A tibble: 2 × 4 #>   record_id age____baseline age____followup gender #>       <dbl>           <dbl>           <dbl> <chr>  #> 1         1              25              27 male   #> 2         2              26              28 female # Simpel with two instruments list2 <- list(   data.frame(     record_id = c(1, 2),     age = c(25, 26)   ),   data.frame(     record_id = c(1, 2),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list2) #> Joining with `by = join_by(record_id)` #>   record_id age gender #> 1         1  25   male #> 2         2  26 female # Simple with single instrument list3 <- list(data.frame(   record_id = c(1, 2),   age = c(25, 26) )) redcap_wider(list3) #>   record_id age #> 1         1  25 #> 2         2  26 # Longitudinal with repeatable instruments list4 <- list(   data.frame(     record_id = c(1, 2, 1, 2),     redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"),     age = c(25, 26, 27, 28)   ),   data.frame(     record_id = c(1, 1, 1, 1, 2, 2, 2, 2),     redcap_event_name = c(       \"baseline\", \"baseline\", \"followup\", \"followup\",       \"baseline\", \"baseline\", \"followup\", \"followup\"     ),     redcap_repeat_instrument = \"walk\",     redcap_repeat_instance = c(1, 2, 1, 2, 1, 2, 1, 2),     dist = c(40, 32, 25, 33, 28, 24, 23, 36)   ),   data.frame(     record_id = c(1, 2),     redcap_event_name = c(\"baseline\", \"baseline\"),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list4) #> Joining with `by = join_by(record_id)` #> Joining with `by = join_by(record_id)` #> # A tibble: 2 × 8 #>   record_id age____baseline age____followup dist____1____baseline #>       <dbl>           <dbl>           <dbl>                 <dbl> #> 1         1              25              27                    40 #> 2         2              26              28                    28 #> # ℹ 4 more variables: dist____1____followup <dbl>, dist____2____baseline <dbl>, #> #   dist____2____followup <dbl>, gender <chr>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set for demonstration — redcapcast_data","title":"Data set for demonstration — redcapcast_data","text":"small dataset REDCap database demonstrational purposes. Contains synthetic data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set for demonstration — redcapcast_data","text":"","code":"data(redcapcast_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data set for demonstration — redcapcast_data","text":"data frame 22 variables: record_id ID, numeric redcap_event_name Event name, character redcap_repeat_instrument Repeat instrument, character redcap_repeat_instance Repeat instance, numeric cpr CPR number, character inclusion Inclusion date, Date inclusion_time Inclusion time, hms dob Date birth, Date age Age decimal, numeric age_integer Age integer, numeric sex Legal sex, character cohabitation Cohabitation status, character con_calc con_calc con_mrs con_mrs consensus_complete consensus_complete hypertension Hypertension, character diabetes diabetes, character region region, character baseline_data_start_complete Completed, character mrs_assessed mRS Assessed, character mrs_date Assesment date, Date mrs_score Categorical score, numeric mrs_complete Complete, numeric event_datetime Event datetime, POSIXct event_age Age time event, numeric event_type Event type, character new_event_complete Completed, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCap metadata from data base — redcapcast_meta","title":"REDCap metadata from data base — redcapcast_meta","text":"metadata dataset REDCap database demonstration purposes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"REDCap metadata from data base — redcapcast_meta","text":"","code":"data(redcapcast_meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"REDCap metadata from data base — redcapcast_meta","text":"data frame 22 variables: field_name field_name, character form_name form_name, character section_header section_header, character field_type field_type, character field_label field_label, character select_choices_or_calculations select_choices_or_calculations, character field_note field_note, character text_validation_type_or_show_slider_number text_validation_type_or_show_slider_number, character text_validation_min text_validation_min, character text_validation_max text_validation_max, character identifier identifier, character branching_logic branching_logic, character required_field required_field, character custom_alignment custom_alignment, character question_number question_number, character matrix_group_name matrix_group_name, character matrix_ranking matrix_ranking, character field_annotation field_annotation, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":null,"dir":"Reference","previous_headings":"","what":"Replace curly apostrophes and quotes from word — replace_curly_quote","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"Copied textclean, updated since 2018 CRAN. Github:https://github.com/trinker/textclean","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"","code":"replace_curly_quote(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"x character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Sanitize list of data frames — sanitize_split","title":"Sanitize list of data frames — sanitize_split","text":"Removing empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sanitize list of data frames — sanitize_split","text":"","code":"sanitize_split(   l,   generic.names = c(\"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\"),   drop.complete = TRUE,   drop.empty = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sanitize list of data frames — sanitize_split","text":"l list data frames. generic.names vector generic names excluded. drop.complete logical remove generic REDCap variables indicating instrument completion. Default TRUE. drop.empty logical remove variables NAs Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sanitize list of data frames — sanitize_split","text":"list data frames generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Set attributes for named attribute. Appends if attr is NULL — set_attr","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"Set attributes named attribute. Appends attr NULL","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"","code":"set_attr(data, label, attr = NULL, overwrite = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"data vector label label attr attribute name overwrite overwrite existing attributes. Default FALSE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"vector attribute","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":null,"dir":"Reference","previous_headings":"","what":"Launch the included Shiny-app for database casting and upload — shiny_cast","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"Wraps shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"","code":"shiny_cast(...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"... Arguments passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"","code":"# shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":null,"dir":"Reference","previous_headings":"","what":"Split a data frame into separate tables for each form — split_non_repeating_forms","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"Split data frame separate tables form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"split_non_repeating_forms(table, universal_fields, fields)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"table data frame universal_fields character vector fields included every table fields two-column matrix containing names fields included form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"list data frames, one non-repeating form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"# Create a table table <- data.frame(   id = c(1, 2, 3, 4, 5),   form_a_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_a_age = c(25, 30, 25, 15, 20),   form_b_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_b_gender = c(\"M\", \"F\", \"M\", \"F\", \"F\") )  # Create the universal fields universal_fields <- c(\"id\")  # Create the fields fields <- matrix(   c(     \"form_a_name\", \"form_a\",     \"form_a_age\", \"form_a\",     \"form_b_name\", \"form_b\",     \"form_b_gender\", \"form_b\"   ),   ncol = 2, byrow = TRUE )  # Split the table split_non_repeating_forms(table, universal_fields, fields) #> $form_a_age #>   id #> 1  1 #> 2  2 #> 3  3 #> 4  4 #> 5  5 #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended string splitting — strsplitx","title":"Extended string splitting — strsplitx","text":"Can used substitute base function. Main claim fame easing split around defined delimiter, see example.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended string splitting — strsplitx","text":"","code":"strsplitx(x, split, type = \"classic\", perl = FALSE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended string splitting — strsplitx","text":"x data split delimiter type Split type. Can c(\"classic\", \"\", \"\", \"around\") perl perl param strsplit() ... additional parameters passed base strsplit handling splits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended string splitting — strsplitx","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended string splitting — strsplitx","text":"","code":"test <- c(\"12 months follow-up\", \"3 steps\", \"mRS 6 weeks\", \"Counting to 231 now\") strsplitx(test, \"[0-9]\", type = \"around\") #> [[1]] #> [1] \"1\"                 \"2\"                 \" months follow-up\" #>  #> [[2]] #> [1] \"3\"      \" steps\" #>  #> [[3]] #> [1] \"mRS \"   \"6\"      \" weeks\" #>  #> [[4]] #> [1] \"Counting to \" \"2\"            \"3\"            \"1\"            \" now\"         #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":null,"dir":"Reference","previous_headings":"","what":"Transfer variable name suffix to label in widened data — suffix2label","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"Transfer variable name suffix label widened data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"","code":"suffix2label(   data,   suffix.sep = \"____\",   attr = \"label\",   glue.str = \"{label} ({paste(suffixes,collapse=', ')})\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"data data.frame suffix.sep string split suffix(es). Passed strsplit attr label attribute. Default \"label\" glue.str glue string new label. Available variables \"label\" \"suffixes\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":null,"dir":"Reference","previous_headings":"","what":"Correction based on time_only_filter function — time_only_correction","title":"Correction based on time_only_filter function — time_only_correction","text":"Correction based time_only_filter function","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Correction based on time_only_filter function — time_only_correction","text":"","code":"time_only_correction(data, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Correction based on time_only_filter function — time_only_correction","text":"data data set ... arguments passed `guess_time_only_filter()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Correction based on time_only_filter function — time_only_correction","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Correction based on time_only_filter function — time_only_correction","text":"","code":"data <- redcapcast_data ## data |> time_only_correction()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert vector to factor based on threshold of number of unique levels — var2fct","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"wrapper forcats::as_factor, sorts numeric vectors factoring, levels character vectors order appearance.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"","code":"var2fct(data, unique.n)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"data vector data.frame column unique.n threshold convert class factor","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"","code":"sample(seq_len(4), 20, TRUE) |>   var2fct(6) |>   summary() #> 1 2 3 4  #> 7 3 6 4  sample(letters, 20) |>   var2fct(6) |>   summary() #>    Length     Class      Mode  #>        20 character character  sample(letters[1:4], 20, TRUE) |> var2fct(6) #>  [1] a c c a b c d c c b d b a d d c b d b a #> Levels: a c b d"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"Named vector REDCap choices (`wrapping compact_vec()`)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"","code":"vec2choice(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"data named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"character string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"","code":"sample(seq_len(4), 20, TRUE) |>   as_factor() |>   named_levels() |>   sort() |>   vec2choice() #> [1] \"1, 1 | 2, 2 | 3, 3 | 4, 4\""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24122","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.12.2","title":"REDCapCAST 24.12.2","text":"newly introduced extension forcats::fct_drop() corrected work intended method.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.12.1","title":"REDCapCAST 24.12.1","text":"CRAN release: 2024-12-02 release attempts solve problems hosting shiny_cast app, also implementing functions preserve much meta data possible REDCap database exporting data. hosting shinyapps.io given lot trouble recently. Modified package structure little around shiny_cast(), accommodate alternative hosting approach package functions included script instead requiring package. NEW: new option raw_or_label read_readcap_tables() added: “”. Get raw values REDCap labels applied labels. Use as_factor() format factors original labels use gtsummary package easily get beautiful tables original labels REDCap. Use fct_drop() drop empty levels. NEW: fct_drop() added extension forcats::fct_drop(), works across data.frames. Use fct_drop(). CHANGE: default data export method easy_redcap() changed use new labelled data export read_readcap_tables().","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24113","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.3","title":"REDCapCAST 24.11.3","text":"BUG: shiny_cast() fails load missed loading REDCapCAST library ui.r. Fixed. Tests great.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24112","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.2","title":"REDCapCAST 24.11.2","text":"CRAN release: 2024-11-22 24.11.1 rejected CRAN based wrong title capitalisation. opportunity extend package overhaul. actually turned major step towards usable shiny app received focus. implemented option specify categorical variables factorize, modified version {forcats} {haven}’s as_factor(), preserve attributes applied data able upload cast REDCap meta data richly formatted data (use .rds). matter input type, input parsed using default options {readr} package. Also avoid mis-labelling, logicals converted factors REDCap truefalse class follows different naming conversion compared R. Also correct support variable labels field labels (use .rds formatted data label labelled::var_label()) Vignettes documentation restructured. package detached REDCapRITS, originally forked . data split function kept, testing rewritten. projects evolved away original fork.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24111","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.1","title":"REDCapCAST 24.11.1","text":"Revised tests. Documentation slightly updated highlight shiny app casting REDCap metadata. working hosting Shiny Server.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-11-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 24.11.1","text":"Bug: ‘form.name’ specified ‘ds2dd_detailed()’ ignored. Corrected ignored ‘form.sep’ specified. Added handling re-occurring form.sep pattern. New: export_redcap_instrument() new version create_instrument_meta(), export single instrument. Multiple instrument export can done lapply() purrr::map(). allows inclusion functionality Shiny implementation easier handle. create_instrument_meta() deprecated. Improved: shiny_cast() app updated actually work install package clones whole repository.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"shiny-24-11-1","dir":"Changelog","previous_headings":"","what":"Shiny:","title":"REDCapCAST 24.11.1","text":"New: Major overhaul app interface introduction bslib building page. Also Detailed documentation added app workflow. New: Export REDCap instrument ready add database based uploaded spreadsheet. thanks export_redcap_instrument() function. functionality intended projects production adding instruments handled manually API upload. Bug: Export datadictionary “” instead “NA” NAs. Upload REDCap failed. anymore. shiny implementation included package. Implementing shinylive may looked later.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24103","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.10.3","title":"REDCapCAST 24.10.3","text":"CRAN release: 2024-10-03 Updated links spelling.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24101","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.10.1","title":"REDCapCAST 24.10.1","text":"Minor changes pass tests renv . rhub really running smooth previously.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2461","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.6.1","title":"REDCapCAST 24.6.1","text":"CRAN release: 2024-06-07","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-6-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.6.1","text":"Fix: read_redcap_tables(): field names testing allows include “[form_name]_complete” fields. Fix: ds2dd_detailed(): default record ID name now “record_id”, REDCap default. Default still use first column name. Support added interpret column name prefix suffix instrument names. See examples. New: create_instrument_meta(): creates zip instrument files allow adding new instruments project production. Takes data dictionary input creates zip instrument specified form_name column. New: doc2dd(): function convert document table data dictionary. allows specify instrument whole data dictionary text document, easier work easily modifiable. generic case data frame variable names values column. format like REDCap data dictionary, gives options formatting. related functions data handling formatting. One interesting function case_match_regex_list(), allows dynamic dplyr::case_when()-like approach regex-matching. think neat least.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-and-more-24-6-1","dir":"Changelog","previous_headings":"","what":"Documentation and more","title":"REDCapCAST 24.6.1","text":"Dependencies: order deploy shiny_cast() shinylive, need remove curl dependency. accomplish , shiny_deploy() helper functions moved package project.aid. realising REDCapR curl dependency, culprit. REDCapCAST going shinylive web-app without removing REDCapR dependency REDCap database interaction, defy purpose. ’ll stick hosted Shiny app instead.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2421","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.2.1","title":"REDCapCAST 24.2.1","text":"CRAN release: 2024-02-28","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-2-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.2.1","text":"Fix: ds2dd(): uses correct default dd column names. deprecated. Fix: easy_redcap(): fixed actually allow project naming. also specifically asks uri. widening updated work. Fix: redcap_wider(): updated accept formats allow handling simple projects without repeating instruments longitudinal. Fix: read_redcap_tables(): now handles non-longitudinal project without repeatable instruments. NEW: ds2dd_detailed(): extension ds2dd(), serves preserve much metadata possible automatically. Depends group helper functions also introduced. special note guess_time_only_filter(), try guess columns/variables formatted time formats. Supports hms time format. DETAILED INSTRUCTION VIGNETTE PENDING. NEW: read_redcap_instrument(): convenience function retrieve complete instrument. Goes little focused approach. REDCapR::redcap_read() can specify form download. also specify record id variable though. done read_redcap_instrument(). Nothing fancy. NEW: shiny_cast(): Shiny application ease process converting spreadsheet/data set REDCap database. app runs locally data transferred securely. can just create upload data dictionary, can also transfer given data process. plan host app shinyapps.io, now can run locally.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"other-24-2-1","dir":"Changelog","previous_headings":"","what":"Other","title":"REDCapCAST 24.2.1","text":"believe renv now added runs correctly. clone, renv::restore() install necessary package modify package. seems always back forth. renv may way . Added Code Conduct.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2411","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.1.1","title":"REDCapCAST 24.1.1","text":"CRAN release: 2024-01-09","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-1-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.1.1","text":"Fix: read_redcap_tables(): checking form names based data dictionary allow handling non-longitudinal projects. Prints invalid form names invalid event names. invalid form names supplied REDCapR::redcap_read() (backbone), forms exported, want focused approach. Invalid event names give output rather peculiar formatting. Checking field names validity also added.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-23121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.12.1","title":"REDCapCAST 23.12.1","text":"CRAN release: 2023-12-20 One new function ease secure dataset retrieval bug fixes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-12-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.12.1","text":"New: easy_redcap() function ease retrieval dataset read_redcap_tables() keyring-package based key storage, handles secure API set, storage retrieval. Relies small helper function, get_api_key(), wraps relevant keyring-functions. Includes option cast data wide format flag widen.data. Fix: REDCap_split(): using function , supplying data set check boxes fail metadata supplied tibble. Metadata now converted data.frame. Fixed. Fix: read_redcap_tables(): fixed bug supplying events.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2362","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.2","title":"REDCapCAST 23.6.2","text":"CRAN release: 2023-07-04 version marks introduction helper functions handle database creation.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.6.2","text":"New: ds2dd() function migrating stRoke-package. Assists building data dictionary REDCap dataset. New: strsplitx() function ease string splitting extension base::strsplit(). Inspiration https://stackoverflow.com//11014253/21019325 https://www.r-bloggers.com/2018/04/strsplit--keeping--delimiter/. New: d2n() function converts single digits written numbers. Used sanitize variable form names REDCap database creation. universal number word suggest english::word() xfun::numbers_to_words(), though testing .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2361","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.1","title":"REDCapCAST 23.6.1","text":"CRAN release: 2023-06-06","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-6-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.6.1","text":"Updated description. Look! hex icon! Heading CRAN.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-4-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.4.1","text":"Aiming CRAN","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-3-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.3.2","text":"Page added. Vignettes follow. GithubActions tests added code coverage assessed. Badge galore..","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"new-name-redcapcast-23-3-1","dir":"Changelog","previous_headings":"","what":"New name: REDCapCAST","title":"REDCapCAST 23.3.1","text":"reflect new functions limitation working R, changed naming fork, still, course, maintaining status fork. versioning moved monthly naming convention. main goal package keep option export defined subset whole dataset REDCap server made possible REDCapR::redcap_read() function, combine work put REDCapRITS package handling longitudinal projects /projects repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-3-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 23.3.1","text":"read_redcap_tables() NEW: function mainly implementation combined use REDCapR::readcap_read() REDCap_split() maintain focused nature REDCapR::readcap_read(), download specified data. Also implements tests valid form names event names. usual fall-back solution get data. redcap_wider() NEW: function pivots long data frames read_redcap_tables() using tidyr::pivot_wider(). focused_metadata() NEW: hidden helper function enable focused data acquisition approach handle subset metadata corresponding focused dataset.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"notes-23-3-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"REDCapCAST 23.3.1","text":"metadata handling IMPROVED: improved handling different column names matadata (DataDictionary) REDCap dependent whether acquired thorugh api og downloaded server.","code":""}]
+[{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"our-pledge","dir":"","previous_headings":"","what":"Our Pledge","title":"Contributor Covenant Code of Conduct","text":"members, contributors, leaders pledge make participation community harassment-free experience everyone, regardless age, body size, visible invisible disability, ethnicity, sex characteristics, gender identity expression, level experience, education, socio-economic status, nationality, personal appearance, race, caste, color, religion, sexual identity orientation. pledge act interact ways contribute open, welcoming, diverse, inclusive, healthy community.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"our-standards","dir":"","previous_headings":"","what":"Our Standards","title":"Contributor Covenant Code of Conduct","text":"Examples behavior contributes positive environment community include: Demonstrating empathy kindness toward people respectful differing opinions, viewpoints, experiences Giving gracefully accepting constructive feedback Accepting responsibility apologizing affected mistakes, learning experience Focusing best just us individuals, overall community Examples unacceptable behavior include: use sexualized language imagery, sexual attention advances kind Trolling, insulting derogatory comments, personal political attacks Public private harassment Publishing others’ private information, physical email address, without explicit permission conduct reasonably considered inappropriate professional setting","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"enforcement-responsibilities","dir":"","previous_headings":"","what":"Enforcement Responsibilities","title":"Contributor Covenant Code of Conduct","text":"Community leaders responsible clarifying enforcing standards acceptable behavior take appropriate fair corrective action response behavior deem inappropriate, threatening, offensive, harmful. Community leaders right responsibility remove, edit, reject comments, commits, code, wiki edits, issues, contributions aligned Code Conduct, communicate reasons moderation decisions appropriate.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"scope","dir":"","previous_headings":"","what":"Scope","title":"Contributor Covenant Code of Conduct","text":"Code Conduct applies within community spaces, also applies individual officially representing community public spaces. Examples representing community include using official e-mail address, posting via official social media account, acting appointed representative online offline event.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"enforcement","dir":"","previous_headings":"","what":"Enforcement","title":"Contributor Covenant Code of Conduct","text":"Instances abusive, harassing, otherwise unacceptable behavior may reported community leaders responsible enforcement andreas@gdamsbo.dk. complaints reviewed investigated promptly fairly. community leaders obligated respect privacy security reporter incident.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"enforcement-guidelines","dir":"","previous_headings":"","what":"Enforcement Guidelines","title":"Contributor Covenant Code of Conduct","text":"Community leaders follow Community Impact Guidelines determining consequences action deem violation Code Conduct:","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"id_1-correction","dir":"","previous_headings":"Enforcement Guidelines","what":"1. Correction","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Use inappropriate language behavior deemed unprofessional unwelcome community. Consequence: private, written warning community leaders, providing clarity around nature violation explanation behavior inappropriate. public apology may requested.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"id_2-warning","dir":"","previous_headings":"Enforcement Guidelines","what":"2. Warning","title":"Contributor Covenant Code of Conduct","text":"Community Impact: violation single incident series actions. Consequence: warning consequences continued behavior. interaction people involved, including unsolicited interaction enforcing Code Conduct, specified period time. includes avoiding interactions community spaces well external channels like social media. Violating terms may lead temporary permanent ban.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"id_3-temporary-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"3. Temporary Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: serious violation community standards, including sustained inappropriate behavior. Consequence: temporary ban sort interaction public communication community specified period time. public private interaction people involved, including unsolicited interaction enforcing Code Conduct, allowed period. Violating terms may lead permanent ban.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"id_4-permanent-ban","dir":"","previous_headings":"Enforcement Guidelines","what":"4. Permanent Ban","title":"Contributor Covenant Code of Conduct","text":"Community Impact: Demonstrating pattern violation community standards, including sustained inappropriate behavior, harassment individual, aggression toward disparagement classes individuals. Consequence: permanent ban sort public interaction within community.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/CODE_OF_CONDUCT.html","id":"attribution","dir":"","previous_headings":"","what":"Attribution","title":"Contributor Covenant Code of Conduct","text":"Code Conduct adapted Contributor Covenant, version 2.1, available https://www.contributor-covenant.org/version/2/1/code_of_conduct.html. Community Impact Guidelines inspired Mozilla’s code conduct enforcement ladder. answers common questions code conduct, see FAQ https://www.contributor-covenant.org/faq. Translations available https://www.contributor-covenant.org/translations.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc. <http://fsf.org/> Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. Developers use GNU GPL protect rights two steps: (1) assert copyright software, (2) offer License giving legal permission copy, distribute /modify . developers’ authors’ protection, GPL clearly explains warranty free software. users’ authors’ sake, GPL requires modified versions marked changed, problems attributed erroneously authors previous versions. devices designed deny users access install run modified versions software inside , although manufacturer can . fundamentally incompatible aim protecting users’ freedom change software. systematic pattern abuse occurs area products individuals use, precisely unacceptable. Therefore, designed version GPL prohibit practice products. problems arise substantially domains, stand ready extend provision domains future versions GPL, needed protect freedom users. Finally, every program threatened constantly software patents. States allow patents restrict development use software general-purpose computers, , wish avoid special danger patents applied free program make effectively proprietary. prevent , GPL assures patents used render program non-free. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions","title":"GNU General Public License","text":"“License” refers version 3 GNU General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Source Code","title":"GNU General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. 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Termination","title":"GNU General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. 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Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. 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Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see <http://www.gnu.org/licenses/>. GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read <http://www.gnu.org/philosophy/--lgpl.html>.","code":"<one line to give the program's name and a brief idea of what it does.> Copyright (C) <year>  <name of author>  This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.  This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along with this program.  If not, see <http://www.gnu.org/licenses/>. <program>  Copyright (C) <year>  <name of author> This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"two-different-ways-to-create-a-data-base","dir":"Articles","previous_headings":"","what":"Two different ways to create a data base","title":"Database-creation","text":"REDCapCAST provides two approaches creating data dictionary aimed helping two different cases: Easily create REDCap data base existing data set. Create table Word describing variables data base use create data base. following try come suggestions use approaches.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"easy-data-set-to-data-base-workflow","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Easy data set to data base workflow","title":"Database-creation","text":"first iteration dataset data dictionary function ds2dd(), creates basic data dictionary variables stored text. sufficient just storing old datasets/spreadsheets securely REDCap. advanced ds2dd_detailed() natural development. try apply common data classes data validation assume first column id number. outputs list dataset modified variable names comply REDCap naming conventions data dictionary. dataset correctly formatted data dictionary preserve much information possible. Additional specifications DataDictionary can made manually, can uploaded modified manually graphical user interface REDCap server.","code":"d1 <- mtcars |>   dplyr::mutate(record_id = seq_len(dplyr::n())) |>   ds2dd()   d1 |>   gt::gt() d2 <- REDCapCAST::redcapcast_data |>    dplyr::mutate(record_id = seq_len(dplyr::n()),                 region=factor(region)) |>   dplyr::select(record_id, dplyr::everything()) |>   (\\(.x){     .x[!grepl(\"_complete$\",names(.x))]   })() |>    (\\(.x){     .x[!grepl(\"^redcap\",names(.x))]   })() |>     ds2dd_detailed() |>    purrr::pluck(\"meta\")   d2 |>    gt::gt()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"data-base-from-table","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Data base from table","title":"Database-creation","text":"…instructions examples coming…","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"meta-data-and-data-upload","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Meta data and data upload","title":"Database-creation","text":"Now DataDictionary can exported spreadsheet uploaded can uploaded using REDCapR package (projects “Development” status). Use one two approaches :","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"manual-upload","dir":"Articles","previous_headings":"Two different ways to create a data base > Meta data and data upload","what":"Manual upload","title":"Database-creation","text":"","code":"write.csv(dd_ls$meta, \"datadictionary.csv\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"upload-with-redcapr","dir":"Articles","previous_headings":"Two different ways to create a data base > Meta data and data upload","what":"Upload with REDCapR","title":"Database-creation","text":"“REDCap R Handbook” written interfacing REDCap R using library(keyring)store credentials chapter 1.1.","code":"REDCapR::redcap_metadata_write(   dd_ls$meta,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/Database-creation.html","id":"step-4---data-upload","dir":"Articles","previous_headings":"Two different ways to create a data base","what":"Step 4 - Data upload","title":"Database-creation","text":"two options available data upload meta data upload: manual REDCapR. latter shown .","code":"REDCapR::redcap_write(   dd_ls$data,   redcap_uri = keyring::key_get(\"DB_URI\"),   token = keyring::key_get(\"DB_TOKEN\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"casting-meta-data","dir":"Articles","previous_headings":"","what":"Casting meta data","title":"REDCapCAST","text":"easiest way use shiny_cast(). can access hosted version launch locally like :","code":"shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"reading-data-from-redcap","dir":"Articles","previous_headings":"","what":"Reading data from REDCap","title":"REDCapCAST","text":"get started, easiest way possible, can use easy_redcap() function (example ). need API-key REDCap server, uri/URL/address API connection (usually address used accessing institutions REDCap server, appended “/api/”). function includes convenience features ease work. project uses repeating instruments possible longitudinal project, can choose widen data. , result list instrument chosen extract data . Make sure specify fields instruments need, avoid save data locally, always source REDCap avoid possibly insecure local storage sensitive data.","code":"easy_redcap(   uri = \"YOUR URI\",   project.name = \"MY_PROJECT\",   widen.data = TRUE,   fields = c(\"record_id\", \"OTHER FIELDS\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"splitting-the-dataset","dir":"Articles","previous_headings":"","what":"Splitting the dataset","title":"REDCapCAST","text":"easy_redcap() function things hood. examples show nicely formatted output achieved. sample dataset Data Dictionary/metadata provided demonstration: save metadata labels dataset, can save field labels choices radio buttons dropdown features: REDCap_split function splits data set list data.frames. easy_redcap() (optionally) continue widen data, transforming list data.frames single data.frame one row subject/record_id (wide data format): Transfer suffixes labels:","code":"redcapcast_data |> gt::gt() redcapcast_meta |> gt::gt() labelled_data <-   apply_field_label(     data = redcapcast_data,     meta = redcapcast_meta   ) |>   apply_factor_labels(meta = redcapcast_meta) list <-   REDCap_split(     records = labelled_data,     metadata = redcapcast_meta,     forms = \"all\"   ) |>   # Next steps cleans up and removes generic columns   sanitize_split() str(list) #> List of 3 #>  $ baseline_data_start: tibble [6 × 14] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id                   : num [1:6] 1 2 3 4 5 6 #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name           : chr [1:6] \"inclusion\" \"inclusion\" \"inclusion\" \"inclusion\" ... #>   ..$ cpr                         : chr [1:6] \"1203401OB4\" \"0102342303\" \"2301569823\" \"0204051342\" ... #>   .. ..- attr(*, \"label\")= chr \"CPR (Danish civil registration number)\" #>   ..$ inclusion                   : Date[1:6], format: \"2023-03-13\" \"2023-03-01\" ... #>   ..$ inclusion_time              : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ... #>   .. ..- attr(*, \"units\")= chr \"secs\" #>   ..$ dob                         : Date[1:6], format: \"1940-03-12\" \"1934-02-01\" ... #>   ..$ age                         : num [1:6] 83 89.1 66.1 117.9 126.2 ... #>   .. ..- attr(*, \"label\")= chr \"Age\\r\\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in\"| __truncated__ #>   ..$ age_integer                 : num [1:6] 83 89 66 117 126 91 #>   .. ..- attr(*, \"label\")= chr \"Age integer\\r\\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C\"| __truncated__ #>   ..$ sex                         : chr [1:6] \"female\" \"male\" \"male\" \"female\" ... #>   .. ..- attr(*, \"label\")= chr \"Legal sex\" #>   ..$ cohabitation                : 'labelled' chr [1:6] \"Yes\" \"Yes\" \"No\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Cohabitation\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ hypertension                : 'labelled' chr [1:6] \"No\" \"No\" \"Yes\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Hypertension\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ diabetes                    : 'labelled' chr [1:6] \"Yes\" \"No\" \"Yes\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Diabetes\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ region                      : 'labelled' chr [1:6] \"East\" \"South\" \"North\" NA ... #>   .. ..- attr(*, \"label\")= chr \"Region\" #>   .. ..- attr(*, \"labels\")= Named chr [1:4] \"1\" \"2\" \"3\" \"4\" #>   .. .. ..- attr(*, \"names\")= chr [1:4] \"North\" \"East\" \"South\" \"West\" #>   ..$ baseline_data_start_complete: chr [1:6] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ mrs                : tibble [5 × 6] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id        : num [1:5] 1 2 2 3 3 #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name: chr [1:5] \"inclusion\" \"inclusion\" \"follow1\" \"follow1\" ... #>   ..$ mrs_assessed     : 'labelled' chr [1:5] \"Yes\" \"Yes\" \"Yes\" \"Yes\" ... #>   .. ..- attr(*, \"label\")= chr \"Assesed\" #>   .. ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>   ..$ mrs_date         : Date[1:5], format: \"2023-03-13\" \"2023-03-07\" ... #>   ..$ mrs_score        : 'labelled' num [1:5] 1 1 3 2 1 #>   .. ..- attr(*, \"label\")= chr \"mRS score\" #>   .. ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   ..$ mrs_complete     : chr [1:5] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ new_event          : tibble [13 × 8] (S3: tbl_df/tbl/data.frame) #>   ..$ record_id               : num [1:13] 2 3 3 3 3 3 4 4 4 4 ... #>   .. ..- attr(*, \"label\")= chr \"ID\" #>   ..$ redcap_event_name       : chr [1:13] \"follow1\" \"follow1\" \"follow1\" \"follow2\" ... #>   ..$ redcap_repeat_instrument: chr [1:13] \"new_event\" \"new_event\" \"new_event\" \"new_event\" ... #>   ..$ redcap_repeat_instance  : num [1:13] 1 1 2 1 2 3 1 2 1 2 ... #>   ..$ event_datetime          : POSIXct[1:13], format: \"2024-01-18 12:49:42\" \"2024-01-18 12:49:58\" ... #>   ..$ event_age               : num [1:13] NA NA NA NA NA NA 96 105 118 118 ... #>   .. ..- attr(*, \"label\")= chr \"Age at event\" #>   ..$ event_type              : 'labelled' chr [1:13] \"TIA\" \"AIS\" \"ICH\" \"ICH\" ... #>   .. ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   .. ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>   ..$ new_event_complete      : chr [1:13] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... wide_data <- redcap_wider(list,   event.glue = \"{.value}____{redcap_event_name}\",   inst.glue = \"{.value}____{redcap_repeat_instance}\" ) #> Joining with `by = join_by(record_id)` #> Joining with `by = join_by(record_id)` wide_data |> str() #> tibble [6 × 49] (S3: tbl_df/tbl/data.frame) #>  $ record_id                         : num [1:6] 1 2 3 4 5 6 #>   ..- attr(*, \"label\")= chr \"ID\" #>  $ cpr                               : chr [1:6] \"1203401OB4\" \"0102342303\" \"2301569823\" \"0204051342\" ... #>   ..- attr(*, \"label\")= chr \"CPR (Danish civil registration number)\" #>  $ inclusion                         : Date[1:6], format: \"2023-03-13\" \"2023-03-01\" ... #>  $ inclusion_time                    : 'hms' num [1:6] 12:38:49 10:38:57 12:01:07 20:39:19 ... #>   ..- attr(*, \"units\")= chr \"secs\" #>  $ dob                               : Date[1:6], format: \"1940-03-12\" \"1934-02-01\" ... #>  $ age                               : num [1:6] 83 89.1 66.1 117.9 126.2 ... #>   ..- attr(*, \"label\")= chr \"Age\\r\\nNote: Apparently, the build in datediff() function does not handle counting whole years. This results in\"| __truncated__ #>  $ age_integer                       : num [1:6] 83 89 66 117 126 91 #>   ..- attr(*, \"label\")= chr \"Age integer\\r\\nNote: as opposed to the build in datediff() this handles counting years as integers very well. C\"| __truncated__ #>  $ sex                               : chr [1:6] \"female\" \"male\" \"male\" \"female\" ... #>   ..- attr(*, \"label\")= chr \"Legal sex\" #>  $ cohabitation                      : 'labelled' chr [1:6] \"Yes\" \"Yes\" \"No\" NA ... #>   ..- attr(*, \"label\")= chr \"Cohabitation\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ hypertension                      : 'labelled' chr [1:6] \"No\" \"No\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Hypertension\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ diabetes                          : 'labelled' chr [1:6] \"Yes\" \"No\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Diabetes\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ region                            : 'labelled' chr [1:6] \"East\" \"South\" \"North\" NA ... #>   ..- attr(*, \"label\")= chr \"Region\" #>   ..- attr(*, \"labels\")= Named chr [1:4] \"1\" \"2\" \"3\" \"4\" #>   .. ..- attr(*, \"names\")= chr [1:4] \"North\" \"East\" \"South\" \"West\" #>  $ baseline_data_start_complete      : chr [1:6] \"Incomplete\" \"Incomplete\" \"Incomplete\" \"Incomplete\" ... #>  $ mrs_assessed____inclusion         : 'labelled' chr [1:6] \"Yes\" \"Yes\" NA NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_assessed____follow1           : 'labelled' chr [1:6] NA \"Yes\" \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_assessed____follow2           : 'labelled' chr [1:6] NA NA \"Yes\" NA ... #>   ..- attr(*, \"label\")= chr \"Assesed\" #>   ..- attr(*, \"labels\")= Named chr [1:2] \"1\" \"2\" #>   .. ..- attr(*, \"names\")= chr [1:2] \"Yes\" \"No\" #>  $ mrs_date____inclusion             : Date[1:6], format: \"2023-03-13\" \"2023-03-07\" ... #>  $ mrs_date____follow1               : Date[1:6], format: NA \"2023-03-09\" ... #>  $ mrs_date____follow2               : Date[1:6], format: NA NA ... #>  $ mrs_score____inclusion            : 'labelled' num [1:6] 1 1 NA NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_score____follow1              : 'labelled' num [1:6] NA 3 2 NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_score____follow2              : 'labelled' num [1:6] NA NA 1 NA NA NA #>   ..- attr(*, \"label\")= chr \"mRS score\" #>   ..- attr(*, \"labels\")= Named chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>   .. ..- attr(*, \"names\")= chr [1:6] \"0\" \"1\" \"2\" \"3\" ... #>  $ mrs_complete____inclusion         : chr [1:6] \"Incomplete\" \"Incomplete\" NA NA ... #>  $ mrs_complete____follow1           : chr [1:6] NA \"Incomplete\" \"Incomplete\" NA ... #>  $ mrs_complete____follow2           : chr [1:6] NA NA \"Incomplete\" NA ... #>  $ event_datetime____1____follow1    : POSIXct[1:6], format: NA \"2024-01-18 12:49:42\" ... #>  $ event_datetime____1____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_age____1____follow1         : num [1:6] NA NA NA 96 127 NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____1____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_type____1____follow1        : 'labelled' chr [1:6] NA \"TIA\" \"AIS\" \"TIA\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____1____follow2        : 'labelled' chr [1:6] NA NA \"ICH\" \"AIS\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ new_event_complete____1____follow1: chr [1:6] NA \"Incomplete\" \"Incomplete\" \"Complete\" ... #>  $ new_event_complete____1____follow2: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... #>  $ event_datetime____2____follow1    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____2____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____3____follow1    : POSIXct[1:6], format: NA NA ... #>  $ event_datetime____3____follow2    : POSIXct[1:6], format: NA NA ... #>  $ event_age____2____follow1         : num [1:6] NA NA NA 105 127 NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____2____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____3____follow1         : num [1:6] NA NA NA NA NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_age____3____follow2         : num [1:6] NA NA NA 118 NA NA #>   ..- attr(*, \"label\")= chr \"Age at event\" #>  $ event_type____2____follow1        : 'labelled' chr [1:6] NA NA \"ICH\" \"TIA\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____2____follow2        : 'labelled' chr [1:6] NA NA \"TIA\" \"ICH\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____3____follow1        : 'labelled' chr [1:6] NA NA NA NA ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ event_type____3____follow2        : 'labelled' chr [1:6] NA NA \"AIS\" \"Unknown\" ... #>   ..- attr(*, \"label\")= chr \"Neurovascular event\" #>   ..- attr(*, \"labels\")= Named chr [1:5] \"1\" \"2\" \"3\" \"4\" ... #>   .. ..- attr(*, \"names\")= chr [1:5] \"TIA\" \"AIS\" \"ICH\" \"SAH\" ... #>  $ new_event_complete____2____follow1: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... #>  $ new_event_complete____2____follow2: chr [1:6] NA NA \"Incomplete\" \"Incomplete\" ... #>  $ new_event_complete____3____follow1: chr [1:6] NA NA NA NA ... #>  $ new_event_complete____3____follow2: chr [1:6] NA NA \"Incomplete\" \"Complete\" ... wide_data_suffixes <- wide_data |> suffix2label()"},{"path":"https://agdamsbo.github.io/REDCapCAST/articles/REDCapCAST.html","id":"creating-a-nice-table","dir":"Articles","previous_headings":"","what":"Creating a nice table","title":"REDCapCAST","text":"","code":"wide_data_suffixes |>    as_factor()|>   dplyr::select(sex, hypertension, diabetes,mrs_score____follow2) |>   gtsummary::tbl_summary(type = gtsummary::all_dichotomous() ~ \"categorical\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Andreas Gammelgaard Damsbo. Author, maintainer. Paul Egeler. Author.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Damsbo , Egeler P (2025). REDCapCAST: REDCap Metadata Casting Castellated Data Handling. R package version 25.1.1, https://agdamsbo.github.io/REDCapCAST/, https://github.com/agdamsbo/REDCapCAST.","code":"@Manual{,   title = {REDCapCAST: REDCap Metadata Casting and Castellated Data Handling},   author = {Andreas Gammelgaard Damsbo and Paul Egeler},   year = {2025},   note = {R package version 25.1.1, https://agdamsbo.github.io/REDCapCAST/},   url = {https://github.com/agdamsbo/REDCapCAST}, }"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"redcapcast-package-","dir":"","previous_headings":"","what":"REDCap Metadata Casting and Castellated Data Handling","title":"REDCap Metadata Casting and Castellated Data Handling","text":"Casting metadata REDCap database creation handling castellated data using repeated instruments longitudinal projects REDCap. implemented app-interface easy database creation accessible available run locally shiny_cast() allowing easily create REDCap database based existing spreadsheet. Export data REDCap different formats handling castellated data, default export requested data, mainly read_redcap_tables(). REDCapCAST initially build , still includes code pegeler/REDCapRITS, relies functions REDCapR-project","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"history","dir":"","previous_headings":"","what":"History","title":"REDCap Metadata Casting and Castellated Data Handling","text":"package originally forked pegeler/REDCapRITS. REDCapRITS represents great extensive work handle castellated REDCap data different programming languages. REDCapCAST evolved much just handling castellated data detatched original project still relying main REDCap_split function. access REDCap database build outstanding work REDCapR. package really started frustration PhD health science hearing colleagues complaining “castellated” data formatting REDCap exports longitudinal projects used wide data. led bad decisions building databases avoiding repeated instruments. package solves challenges, solutions also implemented else like redcapAPI REDCapTidieR packages, bigger project. help new PhD students researchers, also worked creating helper/wrapper-functions ease data access. Documentation ’s way. advanced uses, consider using redcapAPI REDCapR packages.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"future","dir":"","previous_headings":"","what":"Future","title":"REDCap Metadata Casting and Castellated Data Handling","text":"plan package bundled Handbook working REDCap R. work progress limited time available. Please feel free contact create issue ideas future additions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"installation-and-use","dir":"","previous_headings":"","what":"Installation and use","title":"REDCap Metadata Casting and Castellated Data Handling","text":"package available CRAN. Install latest version: Install latest version directly GitHub: Launch REDCapCAST app interface directly machine:","code":"install.packages(\"REDCapCAST\") require(\"remotes\") remotes::install_github(\"agdamsbo/REDCapCAST\") REDCapCAST::shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/index.html","id":"code-of-conduct","dir":"","previous_headings":"","what":"Code of Conduct","title":"REDCap Metadata Casting and Castellated Data Handling","text":"Please note REDCapCAST project released Contributor Code Conduct. contributing project, agree abide terms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCapCAST-package.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","title":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","text":"Casting metadata REDCap database creation handling castellated data using repeated instruments longitudinal projects 'REDCap'. Keeps focused data export approach, allowing export required data database. Also casting new REDCap databases based datasets sources. Originally forked R part 'REDCapRITS' Paul Egeler. See https://github.com/pegeler/REDCapRITS. 'REDCap' (Research Electronic Data Capture) secure, web-based software platform designed support data capture research studies, providing 1) intuitive interface validated data capture; 2) audit trails tracking data manipulation export procedures; 3) automated export procedures seamless data downloads common statistical packages; 4) procedures data integration interoperability external sources (Harris et al (2009) doi:10.1016/j.jbi.2008.08.010 ; Harris et al (2019) doi:10.1016/j.jbi.2019.103208 ).","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCapCAST-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"REDCapCAST: REDCap Metadata Casting and Castellated Data Handling — REDCapCAST-package","text":"Maintainer: Andreas Gammelgaard Damsbo agdamsbo@clin.au.dk (ORCID) Authors: Paul Egeler paulegeler@gmail.com (ORCID)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Split REDCap repeating instruments table into multiple tables — REDCap_split","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"take output REDCap export split base table child tables repeating instrument. Metadata used determine fields included resultant table.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"REDCap_split(   records,   metadata,   primary_table_name = \"\",   forms = c(\"repeating\", \"all\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"records Exported project records. May data.frame, response, character vector containing JSON API call. metadata Project metadata (data dictionary). May data.frame, response, character vector containing JSON API call. primary_table_name Name given list element primary output table. Ignored forms = ''. forms Indicate whether create separate tables repeating instruments forms.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"list \"data.frame\"s. number tables differ   depending forms option selected. 'repeating': one base table one     tables repeating instrument. '': data.frame instrument, regardless     whether repeating instrument .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"Paul W. Egeler","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/REDCap_split.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split REDCap repeating instruments table into multiple tables — REDCap_split","text":"","code":"if (FALSE) { # \\dontrun{ # Using an API call -------------------------------------------------------  library(RCurl)  # Get the records records <- postForm(   uri = api_url, # Supply your site-specific URI   token = api_token, # Supply your own API token   content = \"record\",   format = \"json\",   returnFormat = \"json\" )  # Get the metadata metadata <- postForm(   uri = api_url, # Supply your site-specific URI   token = api_token, # Supply your own API token   content = \"metadata\",   format = \"json\" )  # Convert exported JSON strings into a list of data.frames REDCapCAST::REDCap_split(records, metadata)  # Using a raw data export -------------------------------------------------  # Get the records records <- read.csv(\"/path/to/data/ExampleProject_DATA_2018-06-03_1700.csv\")  # Get the metadata metadata <- read.csv(   \"/path/to/data/ExampleProject_DataDictionary_2018-06-03.csv\" )  # Split the tables REDCapCAST::REDCap_split(records, metadata)  # In conjunction with the R export script ---------------------------------  # You must set the working directory first since the REDCap data export # script contains relative file references. old <- getwd() setwd(\"/path/to/data/\")  # Run the data export script supplied by REDCap. # This will create a data.frame of your records called 'data' source(\"ExampleProject_R_2018-06-03_1700.r\")  # Get the metadatan metadata <- read.csv(\"ExampleProject_DataDictionary_2018-06-03.csv\")  # Split the tables REDCapCAST::REDCap_split(data, metadata) setwd(old) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":null,"dir":"Reference","previous_headings":"","what":"Check if vector is all NA — all_na","title":"Check if vector is all NA — all_na","text":"Check vector NA","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Check if vector is all NA — all_na","text":"","code":"all_na(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Check if vector is all NA — all_na","text":"data vector data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Check if vector is all NA — all_na","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/all_na.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Check if vector is all NA — all_na","text":"","code":"rep(NA, 4) |> all_na() #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"Preserve factor levels REDCap data dictionary data export","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"","code":"apply_factor_labels(data, meta = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"data REDCap exported data set meta REDCap data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_factor_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Preserve all factor levels from REDCap data dictionary in data export — apply_factor_labels","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Apply REDCap filed labels to data frame — apply_field_label","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"Apply REDCap filed labels data frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"","code":"apply_field_label(data, meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"data REDCap exported data set meta REDCap data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/apply_field_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Apply REDCap filed labels to data frame — apply_field_label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert labelled vectors to factors while preserving attributes — as_factor","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"extends as_factor well as_factor, appending original attributes except \"class\" converting factor avoid ta loss case rich formatted labelled data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"","code":"as_factor(x, ...)  # S3 method for class 'factor' as_factor(x, ...)  # S3 method for class 'logical' as_factor(x, ...)  # S3 method for class 'numeric' as_factor(x, ...)  # S3 method for class 'character' as_factor(x, ...)  # S3 method for class 'haven_labelled' as_factor(   x,   levels = c(\"default\", \"labels\", \"values\", \"both\"),   ordered = FALSE,   ... )  # S3 method for class 'labelled' as_factor(   x,   levels = c(\"default\", \"labels\", \"values\", \"both\"),   ordered = FALSE,   ... )  # S3 method for class 'data.frame' as_factor(x, ..., only_labelled = TRUE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"x Object coerce factor. ... arguments passed method. levels create levels generated factor: * \"default\": uses labels available, otherwise values.     Labels sorted value.   * \"\": like \"default\", pastes together level value   * \"label\": use labels; unlabelled values become `NA`   * \"values\": use values ordered `TRUE` create ordered (ordinal) factor, `FALSE` (default) create regular (nominal) factor. only_labelled apply labelled columns?","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"Please refer parent functions extended documentation. avoid redundancy calls errors, functions copy-pasted ","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/as_factor.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert labelled vectors to factors while preserving attributes — as_factor","text":"","code":"# will preserve all attributes c(1, 4, 3, \"A\", 7, 8, 1) |> as_factor() #> [1] 1 4 3 A 7 8 1 #> Levels: 1 4 3 A 7 8 structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10) ) |>   as_factor() |>   dput() #> structure(c(1L, 2L, 3L, 2L, 5L, 4L), levels = c(\"1\", \"2\", \"3\",  #> \"9\", \"10\"), class = \"factor\", labels = c(Unknown = 9, Refused = 10 #> ))  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() #> [1] 1       2       3       2       Refused Unknown #> attr(,\"labels\") #> Unknown Refused  #>       9      10  #> Levels: 1 2 3 Unknown Refused"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":null,"dir":"Reference","previous_headings":"","what":"List-base regex case_when — case_match_regex_list","title":"List-base regex case_when — case_match_regex_list","text":"Mimics case_when list regex patterns values. Used date/time validation generation name vector. Like case_when, matches order priority. Primarily used REDCapCAST data type coding systematic variable naming.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"List-base regex case_when — case_match_regex_list","text":"","code":"case_match_regex_list(data, match.list, .default = NA)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"List-base regex case_when — case_match_regex_list","text":"data vector match.list list case matches .default Default value non-matches. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"List-base regex case_when — case_match_regex_list","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/case_match_regex_list.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"List-base regex case_when — case_match_regex_list","text":"","code":"case_match_regex_list(   c(\"test_date\", \"test_time\", \"test_tida\", \"test_tid\"),   list(date_dmy = \"_dat[eo]$\", time_hh_mm_ss = \"_ti[md]e?$\") ) #> [1] \"date_dmy\"      \"time_hh_mm_ss\" NA              \"time_hh_mm_ss\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":null,"dir":"Reference","previous_headings":"","what":"Overview of REDCapCAST data for shiny — cast_data_overview","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"Overview REDCapCAST data shiny","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"","code":"cast_data_overview(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"data list class 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_data_overview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Overview of REDCapCAST data for shiny — cast_data_overview","text":"gt object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":null,"dir":"Reference","previous_headings":"","what":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"Overview REDCapCAST meta data shiny","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"","code":"cast_meta_overview(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"data list class 'REDCapCAST'","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cast_meta_overview.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Overview of REDCapCAST meta data for shiny — cast_meta_overview","text":"gt object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to generate REDCap choices from character vector — char2choice","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"Simple function generate REDCap choices character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"","code":"char2choice(data, char.split = \"/\", raw = NULL, .default = NA)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"data vector char.split splitting character(s) raw specific values. Can used options length. .default default value missing. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to generate REDCap choices from character vector — char2choice","text":"","code":"char2choice(c(\"yes/no\",\"  yep. / nope  \",\"\",NA,\"what\"),.default=NA) #> [1] \"1, yes | 2, no\"    \"1, yep. | 2, nope\" NA                  #> [4] NA                  \"1, what\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple function to generate REDCap branching logic from character vector — char2cond","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"Simple function generate REDCap branching logic character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"","code":"char2cond(   data,   minor.split = \",\",   major.split = \";\",   major.sep = \" or \",   .default = NA )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"data vector minor.split minor split major.split major split major.sep argument separation. Default \" \". .default default value missing. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/char2cond.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple function to generate REDCap branching logic from character vector — char2cond","text":"","code":"#data <- dd_inst$betingelse #c(\"Extubation_novent, 2; Pacu_delay, 1\") |> char2cond()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":null,"dir":"Reference","previous_headings":"","what":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"simple function remove rich text formatting field label save first paragraph ('<p>...<\/p>').","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"","code":"clean_field_label(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"data field label","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_field_label.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Very simple function to remove rich text formatting from field label and save the first paragraph ('<p>...<\/p>'). — clean_field_label","text":"","code":"clean_field_label(\"<div class=\\\"rich-text-field-label\\\"><p>Fazekas score<\/p><\/div>\") #> [1] \"Fazekas score\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":null,"dir":"Reference","previous_headings":"","what":"clean_redcap_name — clean_redcap_name","title":"clean_redcap_name — clean_redcap_name","text":"Stepwise removal non-alphanumeric characters, trailing white space, substitutes spaces underscores converts lower case. Trying make different naming conventions.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"clean_redcap_name — clean_redcap_name","text":"","code":"clean_redcap_name(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"clean_redcap_name — clean_redcap_name","text":"x vector data frame cleaning","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"clean_redcap_name — clean_redcap_name","text":"vector data frame, format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/clean_redcap_name.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"clean_redcap_name — clean_redcap_name","text":"","code":"\"Research!, ne:ws? and c;l-.ls\" |> clean_redcap_name() #> [1] \"research_news_and_clls\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":null,"dir":"Reference","previous_headings":"","what":"Compacting a vector of any length with or without names — compact_vec","title":"Compacting a vector of any length with or without names — compact_vec","text":"Compacting vector length without names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Compacting a vector of any length with or without names — compact_vec","text":"","code":"compact_vec(data, nm.sep = \": \", val.sep = \"; \")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Compacting a vector of any length with or without names — compact_vec","text":"data vector, optionally named nm.sep string separating name value val.sep string separating values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Compacting a vector of any length with or without names — compact_vec","text":"character string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Compacting a vector of any length with or without names — compact_vec","text":"","code":"sample(seq_len(4), 20, TRUE) |>   as_factor() |>   named_levels() |>   sort() |>   compact_vec() #> [1] \"1: 1; 2: 2; 3: 3; 4: 4\" 1:6 |> compact_vec() #> [1] \"1; 2; 3; 4; 5; 6\" \"test\" |> compact_vec() #> [1] \"test\" sample(letters[1:9], 20, TRUE) |> compact_vec() #> [1] \"g; e; e; b; f; d; b; c; i; f; g; e; f; i; f; e; b; a; d; h\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":null,"dir":"Reference","previous_headings":"","what":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"Create two-column HTML table data piping REDCap instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"","code":"create_html_table(text, variable)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"text descriptive text variable variable pipe","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Create two-column HTML table for data piping in REDCap instruments — create_html_table","text":"","code":"create_html_table(text = \"Patient ID\", variable = c(\"[cpr]\")) #> <table style=\"border-collapse: collapse; width: 100%;\" border=\"0\"> <tbody><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">Patient ID<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><\/tbody> <\/table> create_html_table(text = paste(\"assessor\", 1:2, sep = \"_\"), variable = c(\"[cpr]\")) #> <table style=\"border-collapse: collapse; width: 100%;\" border=\"0\"> <tbody><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">assessor_1<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><tr> <td style=\"width: 58%;\"> <h5><span style=\"font-weight: normal;\">assessor_2<br /><\/span><\/h5> <\/td> <td style=\"width: 42%; text-align: left;\"> <h5><span style=\"font-weight: bold;\">[cpr]<\/span><\/h5> <\/td> <\/tr><\/tbody> <\/table> # create_html_table(text = c(\"CPR nummer\",\"Word\"), variable = c(\"[cpr][1]\", \"[cpr][2]\", \"[test]\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"Metadata can added editing data dictionary project initial design phase. want later add new instruments, function can used create () instrument(s) add project production.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"","code":"create_instrument_meta(data, dir = here::here(\"\"), record.id = TRUE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"data metadata relevant instrument. `ds2dd_detailed()` dir destination dir instrument zip. Default current WD. record.id flag omit first row data dictionary assuming record_id field included instrument. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DEPRICATED Create zips file with necessary content based on data set — create_instrument_meta","text":"","code":"if (FALSE) { # \\dontrun{ data <- iris |>   ds2dd_detailed(     add.auto.id = TRUE,     form.name = sample(c(\"b\", \"c\"),       size = 6,       replace = TRUE, prob = rep(.5, 2)     )   ) |>   purrr::pluck(\"meta\") # data |> create_instrument_meta()  data <- iris |>   ds2dd_detailed(add.auto.id = FALSE) |>   purrr::pluck(\"data\") iris |>   setNames(glue::glue(\"{sample(x = c('a','b'),size = length(ncol(iris)), replace=TRUE,prob = rep(x=.5,2))}__{names(iris)}\")) |>   ds2dd_detailed(form.sep = \"__\") data |>   purrr::pluck(\"meta\") |>   create_instrument_meta(record.id = FALSE) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html","id":null,"dir":"Reference","previous_headings":"","what":"Cut string to desired length — cut_string_length","title":"Cut string to desired length — cut_string_length","text":"Cut string desired length","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Cut string to desired length — cut_string_length","text":"","code":"cut_string_length(data, l = 100)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Cut string to desired length — cut_string_length","text":"data data l length","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Cut string to desired length — cut_string_length","text":"character string length l","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Cut string to desired length — cut_string_length","text":"","code":"\"length\" |> cut_string_length(l=3) #> [1] \"len\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert single digits to words — d2w","title":"Convert single digits to words — d2w","text":"Convert single digits words","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert single digits to words — d2w","text":"","code":"d2w(x, lang = \"en\", neutrum = FALSE, everything = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert single digits to words — d2w","text":"x data. Handle vectors, data.frames lists lang language. Danish (da) English (en), Default \"en\" neutrum numbers depending counted word everything flag also split numbers >9 single digits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert single digits to words — d2w","text":"returns characters format input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/d2w.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert single digits to words — d2w","text":"","code":"d2w(c(2:8, 21)) #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" \"21\"    d2w(data.frame(2:7, 3:8, 1), lang = \"da\", neutrum = TRUE) #>   X2.7 X3.8 X1 #> 1   to  tre et #> 2  tre fire et #> 3 fire  fem et #> 4  fem seks et #> 5 seks  syv et #> 6  syv otte et  ## If everything=T, also larger numbers are reduced. ## Elements in the list are same length as input d2w(list(2:8, c(2, 6, 4, 23), 2), everything = TRUE) #> [[1]] #> [1] \"two\"   \"three\" \"four\"  \"five\"  \"six\"   \"seven\" \"eight\" #>  #> [[2]] #> [1] \"two\"       \"six\"       \"four\"      \"two three\" #>  #> [[3]] #> [1] \"two\" #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"Works well `project.aid::docx2list()`. Allows defining database text document (see provided template) easier use data base creation. approach allows easier collaboration defining database. generic case data frame variable names values column. format like REDCap data dictionary, gives options formatting.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"","code":"doc2dd(   data,   instrument.name,   col.variables = 1,   list.datetime.format = list(date_dmy = \"_dat[eo]$\", time_hh_mm_ss = \"_ti[md]e?$\"),   col.description = NULL,   col.condition = NULL,   col.subheader = NULL,   subheader.tag = \"h2\",   condition.minor.sep = \",\",   condition.major.sep = \";\",   col.calculation = NULL,   col.choices = NULL,   choices.char.sep = \"/\",   missing.default = NA )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"data tibble data.frame variable names one column instrument.name character vector length one. Instrument name. col.variables variable names column (default = 1), allows dplyr subsetting list.datetime.format formatting date/time detection. See `case_match_regex_list()` col.description descriptions column, allows dplyr subsetting. empty, variable names used. col.condition conditions branching column, allows dplyr subsetting. See `char2cond()`. col.subheader sub-header column, allows dplyr subsetting. See `format_subheader()`. subheader.tag formatting tag. Default \"h2\" condition.minor.sep condition split minor. See `char2cond()`. Default \",\". condition.major.sep condition split major. See `char2cond()`. Default \";\". col.calculation calculations column. written exact. Character vector. col.choices choices column. See `char2choice()`. choices.char.sep choices split. See `char2choice()`. Default \"/\". missing.default value missing fields. Default NA.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"tibble data.frame (data)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Doc table to data dictionary - EARLY, DOCS MISSING — doc2dd","text":"","code":"# data <- dd_inst # data |> doc2dd(instrument.name = \"evt\", # col.description = 3, # col.condition = 4, # col.subheader = 2, # col.calculation = 5, # col.choices = 6)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":null,"dir":"Reference","previous_headings":"","what":"(DEPRECATED) Data set to data dictionary function — ds2dd","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"Creates basic data dictionary skeleton. Please see `ds2dd_detailed()` advanced function.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"","code":"ds2dd(   ds,   record.id = \"record_id\",   form.name = \"basis\",   field.type = \"text\",   field.label = NULL,   include.column.names = FALSE,   metadata = names(REDCapCAST::redcapcast_meta) )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"ds data set record.id name column number id variable, moved first row data dictionary, character integer. Default \"record_id\". form.name vector form names, character string, length 1 length equal number variables. Default \"basis\". field.type vector field types, character string, length 1 length equal number variables. Default \"text. field.label vector form names, character string, length 1 length equal number variables. Default NULL identical field names. include.column.names Flag give detailed output including new column names original data set upload. metadata Metadata column names. Default included names(REDCapCAST::redcapcast_meta).","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"data.frame list data.frame vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"Migrated stRoke ds2dd(). Fits better functionality 'REDCapCAST'.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"(DEPRECATED) Data set to data dictionary function — ds2dd","text":"","code":"redcapcast_data$record_id <- seq_len(nrow(redcapcast_data)) ds2dd(redcapcast_data, include.column.names=TRUE) #> $DataDictionary #>                      field_name form_name section_header field_type #> 1                     record_id     basis             NA       text #> 2             redcap_event_name     basis             NA       text #> 3      redcap_repeat_instrument     basis             NA       text #> 4        redcap_repeat_instance     basis             NA       text #> 5                           cpr     basis             NA       text #> 6                     inclusion     basis             NA       text #> 7                inclusion_time     basis             NA       text #> 8                           dob     basis             NA       text #> 9                           age     basis             NA       text #> 10                  age_integer     basis             NA       text #> 11                          sex     basis             NA       text #> 12                 cohabitation     basis             NA       text #> 13                 hypertension     basis             NA       text #> 14                     diabetes     basis             NA       text #> 15                       region     basis             NA       text #> 16 baseline_data_start_complete     basis             NA       text #> 17                 mrs_assessed     basis             NA       text #> 18                     mrs_date     basis             NA       text #> 19                    mrs_score     basis             NA       text #> 20                 mrs_complete     basis             NA       text #> 21                      con_mrs     basis             NA       text #> 22                     con_calc     basis             NA       text #> 23           consensus_complete     basis             NA       text #> 24               event_datetime     basis             NA       text #> 25                    event_age     basis             NA       text #> 26                   event_type     basis             NA       text #> 27           new_event_complete     basis             NA       text #>                     field_label select_choices_or_calculations field_note #> 1                     record_id                             NA         NA #> 2             redcap_event_name                             NA         NA #> 3      redcap_repeat_instrument                             NA         NA #> 4        redcap_repeat_instance                             NA         NA #> 5                           cpr                             NA         NA #> 6                     inclusion                             NA         NA #> 7                inclusion_time                             NA         NA #> 8                           dob                             NA         NA #> 9                           age                             NA         NA #> 10                  age_integer                             NA         NA #> 11                          sex                             NA         NA #> 12                 cohabitation                             NA         NA #> 13                 hypertension                             NA         NA #> 14                     diabetes                             NA         NA #> 15                       region                             NA         NA #> 16 baseline_data_start_complete                             NA         NA #> 17                 mrs_assessed                             NA         NA #> 18                     mrs_date                             NA         NA #> 19                    mrs_score                             NA         NA #> 20                 mrs_complete                             NA         NA #> 21                      con_mrs                             NA         NA #> 22                     con_calc                             NA         NA #> 23           consensus_complete                             NA         NA #> 24               event_datetime                             NA         NA #> 25                    event_age                             NA         NA #> 26                   event_type                             NA         NA #> 27           new_event_complete                             NA         NA #>    text_validation_type_or_show_slider_number text_validation_min #> 1                                          NA                  NA #> 2                                          NA                  NA #> 3                                          NA                  NA #> 4                                          NA                  NA #> 5                                          NA                  NA #> 6                                          NA                  NA #> 7                                          NA                  NA #> 8                                          NA                  NA #> 9                                          NA                  NA #> 10                                         NA                  NA #> 11                                         NA                  NA #> 12                                         NA                  NA #> 13                                         NA                  NA #> 14                                         NA                  NA #> 15                                         NA                  NA #> 16                                         NA                  NA #> 17                                         NA                  NA #> 18                                         NA                  NA #> 19                                         NA                  NA #> 20                                         NA                  NA #> 21                                         NA                  NA #> 22                                         NA                  NA #> 23                                         NA                  NA #> 24                                         NA                  NA #> 25                                         NA                  NA #> 26                                         NA                  NA #> 27                                         NA                  NA #>    text_validation_max identifier branching_logic required_field #> 1                   NA         NA              NA             NA #> 2                   NA         NA              NA             NA #> 3                   NA         NA              NA             NA #> 4                   NA         NA              NA             NA #> 5                   NA         NA              NA             NA #> 6                   NA         NA              NA             NA #> 7                   NA         NA              NA             NA #> 8                   NA         NA              NA             NA #> 9                   NA         NA              NA             NA #> 10                  NA         NA              NA             NA #> 11                  NA         NA              NA             NA #> 12                  NA         NA              NA             NA #> 13                  NA         NA              NA             NA #> 14                  NA         NA              NA             NA #> 15                  NA         NA              NA             NA #> 16                  NA         NA              NA             NA #> 17                  NA         NA              NA             NA #> 18                  NA         NA              NA             NA #> 19                  NA         NA              NA             NA #> 20                  NA         NA              NA             NA #> 21                  NA         NA              NA             NA #> 22                  NA         NA              NA             NA #> 23                  NA         NA              NA             NA #> 24                  NA         NA              NA             NA #> 25                  NA         NA              NA             NA #> 26                  NA         NA              NA             NA #> 27                  NA         NA              NA             NA #>    custom_alignment question_number matrix_group_name matrix_ranking #> 1                NA              NA                NA             NA #> 2                NA              NA                NA             NA #> 3                NA              NA                NA             NA #> 4                NA              NA                NA             NA #> 5                NA              NA                NA             NA #> 6                NA              NA                NA             NA #> 7                NA              NA                NA             NA #> 8                NA              NA                NA             NA #> 9                NA              NA                NA             NA #> 10               NA              NA                NA             NA #> 11               NA              NA                NA             NA #> 12               NA              NA                NA             NA #> 13               NA              NA                NA             NA #> 14               NA              NA                NA             NA #> 15               NA              NA                NA             NA #> 16               NA              NA                NA             NA #> 17               NA              NA                NA             NA #> 18               NA              NA                NA             NA #> 19               NA              NA                NA             NA #> 20               NA              NA                NA             NA #> 21               NA              NA                NA             NA #> 22               NA              NA                NA             NA #> 23               NA              NA                NA             NA #> 24               NA              NA                NA             NA #> 25               NA              NA                NA             NA #> 26               NA              NA                NA             NA #> 27               NA              NA                NA             NA #>    field_annotation #> 1                NA #> 2                NA #> 3                NA #> 4                NA #> 5                NA #> 6                NA #> 7                NA #> 8                NA #> 9                NA #> 10               NA #> 11               NA #> 12               NA #> 13               NA #> 14               NA #> 15               NA #> 16               NA #> 17               NA #> 18               NA #> 19               NA #> 20               NA #> 21               NA #> 22               NA #> 23               NA #> 24               NA #> 25               NA #> 26               NA #> 27               NA #>  #> $`Column names` #>  [1] \"record_id\"                    \"redcap_event_name\"            #>  [3] \"redcap_repeat_instrument\"     \"redcap_repeat_instance\"       #>  [5] \"cpr\"                          \"inclusion\"                    #>  [7] \"inclusion_time\"               \"dob\"                          #>  [9] \"age\"                          \"age_integer\"                  #> [11] \"sex\"                          \"cohabitation\"                 #> [13] \"hypertension\"                 \"diabetes\"                     #> [15] \"region\"                       \"baseline_data_start_complete\" #> [17] \"mrs_assessed\"                 \"mrs_date\"                     #> [19] \"mrs_score\"                    \"mrs_complete\"                 #> [21] \"con_mrs\"                      \"con_calc\"                     #> [23] \"consensus_complete\"           \"event_datetime\"               #> [25] \"event_age\"                    \"event_type\"                   #> [27] \"new_event_complete\"           #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract data from stata file for data dictionary — ds2dd_detailed","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"Extract data stata file data dictionary","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"","code":"ds2dd_detailed(   data,   add.auto.id = FALSE,   date.format = \"dmy\",   form.name = NULL,   form.sep = NULL,   form.prefix = TRUE,   field.type = NULL,   field.label = NULL,   field.label.attr = \"label\",   field.validation = NULL,   metadata = names(REDCapCAST::redcapcast_meta),   convert.logicals = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"data data frame add.auto.id flag add id column date.format date format, character string. ymd/dmy/mdy. dafault dmy. form.name manually specify form name(s). Vector length 1 ncol(data). Default NULL \"data\" used. form.sep supplied dataset form names suffix prefix column/variable names, seperator can specified. supplied, form.name ignored. Default NULL. form.prefix Flag set form prefix (TRUE) suffix (FALSE) column names. Assumes columns pre- suffix specified. field.type manually specify field type(s). Vector length 1 ncol(data). Default NULL \"text\" used everything factors, wil get \"radio\". field.label manually specify field label(s). Vector length 1 ncol(data). Default NULL colnames(data) used attribute `field.label.attr` haven_labelled data set (imported .dta file `haven::read_dta()`). field.label.attr attribute name named labels haven_labelled data set (imported .dta file `haven::read_dta()`. Default \"label\" field.validation manually specify field validation(s). Vector length 1 ncol(data). Default NULL `levels()` used factors attribute `factor.labels.attr` haven_labelled data set (imported .dta file `haven::read_dta()`). metadata redcap metadata headings. Default names(REDCapCAST::redcapcast_meta). convert.logicals convert logicals factor. Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"list length 2","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"details","dir":"Reference","previous_headings":"","what":"Details","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"function natural development ds2dd() function. assumes first column ID-column. checks. Please, always inspect data dictionary upload. Ensure, data set formatted much information possible. `field.type` can supplied","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/ds2dd_detailed.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extract data from stata file for data dictionary — ds2dd_detailed","text":"","code":"## Basic parsing with default options requireNamespace(\"REDCapCAST\") redcapcast_data |>   dplyr::select(-dplyr::starts_with(\"redcap_\")) |>   ds2dd_detailed() #> $data #> # A tibble: 25 × 24 #>    record_id cpr    inclusion  inclusion_time dob          age age_integer sex   #>        <dbl> <chr>  <date>     <chr>          <date>     <dbl>       <dbl> <chr> #>  1         1 12034… 2023-03-13 12:38:49       1940-03-12  83.0          83 fema… #>  2         2 01023… 2023-03-01 10:38:57       1934-02-01  89.1          89 male  #>  3         2 NA     NA         NA             NA          NA            NA NA    #>  4         2 NA     NA         NA             NA          NA            NA NA    #>  5         3 23015… 2022-03-08 12:01:07       1956-01-23  66.1          66 male  #>  6         3 NA     NA         NA             NA          NA            NA NA    #>  7         3 NA     NA         NA             NA          NA            NA NA    #>  8         3 NA     NA         NA             NA          NA            NA NA    #>  9         3 NA     NA         NA             NA          NA            NA NA    #> 10         3 NA     NA         NA             NA          NA            NA NA    #> # ℹ 15 more rows #> # ℹ 16 more variables: cohabitation <chr>, hypertension <chr>, diabetes <chr>, #> #   region <chr>, baseline_data_start_complete <chr>, mrs_assessed <chr>, #> #   mrs_date <date>, mrs_score <dbl>, mrs_complete <chr>, con_mrs <dbl>, #> #   con_calc <dbl>, consensus_complete <chr>, event_datetime <dttm>, #> #   event_age <dbl>, event_type <chr>, new_event_complete <chr> #>  #> $meta #> # A tibble: 24 × 18 #>    field_name     form_name section_header field_type field_label    #>    <chr>          <chr>     <lgl>          <chr>      <chr>          #>  1 record_id      data      NA             text       record_id      #>  2 cpr            data      NA             text       cpr            #>  3 inclusion      data      NA             text       inclusion      #>  4 inclusion_time data      NA             text       inclusion_time #>  5 dob            data      NA             text       dob            #>  6 age            data      NA             text       age            #>  7 age_integer    data      NA             text       age_integer    #>  8 sex            data      NA             text       sex            #>  9 cohabitation   data      NA             text       cohabitation   #> 10 hypertension   data      NA             text       hypertension   #> # ℹ 14 more rows #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Adding a record_id field iris |> ds2dd_detailed(add.auto.id = TRUE) #> $data #> # A tibble: 150 × 6 #>    record_id sepallength sepalwidth petallength petalwidth species #>        <int>       <dbl>      <dbl>       <dbl>      <dbl>   <dbl> #>  1         1         5.1        3.5         1.4        0.2       1 #>  2         2         4.9        3           1.4        0.2       1 #>  3         3         4.7        3.2         1.3        0.2       1 #>  4         4         4.6        3.1         1.5        0.2       1 #>  5         5         5          3.6         1.4        0.2       1 #>  6         6         5.4        3.9         1.7        0.4       1 #>  7         7         4.6        3.4         1.4        0.3       1 #>  8         8         5          3.4         1.5        0.2       1 #>  9         9         4.4        2.9         1.4        0.2       1 #> 10        10         4.9        3.1         1.5        0.1       1 #> # ℹ 140 more rows #>  #> $meta #> # A tibble: 6 × 18 #>   field_name  form_name section_header field_type field_label  #>   <chr>       <chr>     <lgl>          <chr>      <chr>        #> 1 record_id   data      NA             text       record_id    #> 2 sepallength data      NA             text       Sepal.Length #> 3 sepalwidth  data      NA             text       Sepal.Width  #> 4 petallength data      NA             text       Petal.Length #> 5 petalwidth  data      NA             text       Petal.Width  #> 6 species     data      NA             radio      Species      #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Passing form name information to function iris |>   ds2dd_detailed(     add.auto.id = TRUE,     form.name = sample(c(\"b\", \"c\"), size = 6, replace = TRUE, prob = rep(.5, 2))   ) |>   purrr::pluck(\"meta\") #> # A tibble: 6 × 18 #>   field_name  form_name section_header field_type field_label  #>   <chr>       <chr>     <lgl>          <chr>      <chr>        #> 1 record_id   b         NA             text       record_id    #> 2 sepallength c         NA             text       Sepal.Length #> 3 sepalwidth  b         NA             text       Sepal.Width  #> 4 petallength c         NA             text       Petal.Length #> 5 petalwidth  b         NA             text       Petal.Width  #> 6 species     c         NA             radio      Species      #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> mtcars |> numchar2fct() |> ds2dd_detailed(add.auto.id = TRUE) #> $data #> # A tibble: 32 × 12 #>    record_id   mpg   cyl  disp    hp  drat    wt  qsec    vs    am  gear  carb #>        <int> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1         1  21       2  160    110  3.9   2.62  16.5     1     2     2     4 #>  2         2  21       2  160    110  3.9   2.88  17.0     1     2     2     4 #>  3         3  22.8     1  108     93  3.85  2.32  18.6     2     2     2     1 #>  4         4  21.4     2  258    110  3.08  3.22  19.4     2     1     1     1 #>  5         5  18.7     3  360    175  3.15  3.44  17.0     1     1     1     2 #>  6         6  18.1     2  225    105  2.76  3.46  20.2     2     1     1     1 #>  7         7  14.3     3  360    245  3.21  3.57  15.8     1     1     1     4 #>  8         8  24.4     1  147.    62  3.69  3.19  20       2     1     2     2 #>  9         9  22.8     1  141.    95  3.92  3.15  22.9     2     1     2     2 #> 10        10  19.2     2  168.   123  3.92  3.44  18.3     2     1     2     4 #> # ℹ 22 more rows #>  #> $meta #> # A tibble: 12 × 18 #>    field_name form_name section_header field_type field_label #>    <chr>      <chr>     <lgl>          <chr>      <chr>       #>  1 record_id  data      NA             text       record_id   #>  2 mpg        data      NA             text       mpg         #>  3 cyl        data      NA             radio      cyl         #>  4 disp       data      NA             text       disp        #>  5 hp         data      NA             text       hp          #>  6 drat       data      NA             text       drat        #>  7 wt         data      NA             text       wt          #>  8 qsec       data      NA             text       qsec        #>  9 vs         data      NA             radio      vs          #> 10 am         data      NA             radio      am          #> 11 gear       data      NA             radio      gear        #> 12 carb       data      NA             radio      carb        #> # ℹ 13 more variables: select_choices_or_calculations <chr>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\"        ## Using column name suffix to carry form name data <- iris |>   ds2dd_detailed(add.auto.id = TRUE) |>   purrr::pluck(\"data\") names(data) <- glue::glue(\"{sample(x = c('a','b'),size = length(names(data)), replace=TRUE,prob = rep(x=.5,2))}__{names(data)}\") data |> ds2dd_detailed(form.sep = \"__\") #> $data #> # A tibble: 150 × 6 #>    record_id sepallength sepalwidth petallength petalwidth species #>        <int>       <dbl>      <dbl>       <dbl>      <dbl>   <dbl> #>  1         1         5.1        3.5         1.4        0.2       1 #>  2         2         4.9        3           1.4        0.2       1 #>  3         3         4.7        3.2         1.3        0.2       1 #>  4         4         4.6        3.1         1.5        0.2       1 #>  5         5         5          3.6         1.4        0.2       1 #>  6         6         5.4        3.9         1.7        0.4       1 #>  7         7         4.6        3.4         1.4        0.3       1 #>  8         8         5          3.4         1.5        0.2       1 #>  9         9         4.4        2.9         1.4        0.2       1 #> 10        10         4.9        3.1         1.5        0.1       1 #> # ℹ 140 more rows #>  #> $meta #> # A tibble: 6 × 18 #>   field_name  form_name section_header field_type field_label #>   <chr>       <chr>     <lgl>          <chr>      <chr>       #> 1 record_id   b         NA             text       record_id   #> 2 sepallength a         NA             text       sepallength #> 3 sepalwidth  b         NA             text       sepalwidth  #> 4 petallength a         NA             text       petallength #> 5 petalwidth  b         NA             text       petalwidth  #> 6 species     a         NA             text       species     #> # ℹ 13 more variables: select_choices_or_calculations <lgl>, field_note <lgl>, #> #   text_validation_type_or_show_slider_number <chr>, #> #   text_validation_min <lgl>, text_validation_max <lgl>, identifier <lgl>, #> #   branching_logic <lgl>, required_field <lgl>, custom_alignment <lgl>, #> #   question_number <lgl>, matrix_group_name <lgl>, matrix_ranking <lgl>, #> #   field_annotation <lgl> #>  #> attr(,\"class\") #> [1] \"REDCapCAST\" \"list\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"Secure API key storage and data acquisition in one — easy_redcap","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"Secure API key storage data acquisition one","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"easy_redcap(project.name, widen.data = TRUE, uri, raw_or_label = \"both\", ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"project.name name current project (key storage key_set, using default keyring) widen.data argument widen exported data uri REDCap database API uri raw_or_label argument passed read_redcap_tables. Default \"\" get labelled data. ... arguments passed read_redcap_tables.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"data.frame list depending widen.data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/easy_redcap.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Secure API key storage and data acquisition in one — easy_redcap","text":"","code":"if (FALSE) { # \\dontrun{ easy_redcap(\"My_new_project\", fields = c(\"record_id\", \"age\", \"hypertension\")) } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":null,"dir":"Reference","previous_headings":"","what":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"Metadata can added editing data dictionary project initial design phase. want later add new instruments, function can used create () instrument(s) add project production.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"","code":"export_redcap_instrument(data, file, force = FALSE, record.id = \"record_id\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"data metadata relevant instrument. `ds2dd_detailed()` file destination file name. force force instrument creation ignore different form names just using first. record.id record id variable name. Default 'record_id'.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"exports zip-file","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/export_redcap_instrument.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Creates zip-file with necessary content to manually add instrument to database — export_redcap_instrument","text":"","code":"# iris |> #  ds2dd_detailed( #    add.auto.id = TRUE, #    form.name = sample(c(\"b\", \"c\"), size = 6, replace = TRUE, prob = rep(.5, 2)) #  ) |> #  purrr::pluck(\"meta\") |> #  (\\(.x){ #  split(.x, .x$form_name) #  })() |> #  purrr::imap(function(.x, .i){ #  export_redcap_instrument(.x,file=here::here(paste0(.i,Sys.Date(),\".zip\"))) #  })  # iris |> #  ds2dd_detailed( #    add.auto.id = TRUE #  ) |> #  purrr::pluck(\"meta\") |> #  export_redcap_instrument(file=here::here(paste0(\"instrument\",Sys.Date(),\".zip\")))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":null,"dir":"Reference","previous_headings":"","what":"Allows conversion of factor to numeric values preserving original levels — fct2num","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"Allows conversion factor numeric values preserving original levels","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"","code":"fct2num(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"numeric vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct2num.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Allows conversion of factor to numeric values preserving original levels — fct2num","text":"","code":"c(1, 4, 3, \"A\", 7, 8, 1) |>   as_factor() |>   fct2num() #> [1] 1 2 3 4 5 6 1  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 10  9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"labelled\" ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 10  9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10) ) |>   as_factor() |>   fct2num() #> [1]  1  2  3  2 NA NA"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":null,"dir":"Reference","previous_headings":"","what":"Drop unused levels preserving label data — fct_drop","title":"Drop unused levels preserving label data — fct_drop","text":"extends [forcats::fct_drop()] natively work across data.frame replaces [base::droplevels()].","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Drop unused levels preserving label data — fct_drop","text":"","code":"fct_drop(x, ...)  # S3 method for class 'data.frame' fct_drop(x, ...)  # S3 method for class 'factor' fct_drop(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Drop unused levels preserving label data — fct_drop","text":"x Factor drop unused levels ... arguments passed method.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Drop unused levels preserving label data — fct_drop","text":"","code":"mtcars |>   numchar2fct() |>   fct_drop() #> # A tibble: 32 × 11 #>      mpg cyl    disp    hp  drat    wt  qsec vs    am    gear  carb  #>    <dbl> <fct> <dbl> <dbl> <dbl> <dbl> <dbl> <fct> <fct> <fct> <fct> #>  1  21   6      160    110  3.9   2.62  16.5 0     1     4     4     #>  2  21   6      160    110  3.9   2.88  17.0 0     1     4     4     #>  3  22.8 4      108     93  3.85  2.32  18.6 1     1     4     1     #>  4  21.4 6      258    110  3.08  3.22  19.4 1     0     3     1     #>  5  18.7 8      360    175  3.15  3.44  17.0 0     0     3     2     #>  6  18.1 6      225    105  2.76  3.46  20.2 1     0     3     1     #>  7  14.3 8      360    245  3.21  3.57  15.8 0     0     3     4     #>  8  24.4 4      147.    62  3.69  3.19  20   1     0     4     2     #>  9  22.8 4      141.    95  3.92  3.15  22.9 1     0     4     2     #> 10  19.2 6      168.   123  3.92  3.44  18.3 1     0     4     4     #> # ℹ 22 more rows mtcars |>   numchar2fct() |>   dplyr::mutate(vs = fct_drop(vs)) #>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb #> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4 #> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4 #> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1 #> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1 #> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2 #> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1 #> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4 #> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2 #> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2 #> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4 #> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4 #> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3 #> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3 #> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3 #> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4 #> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4 #> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4 #> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1 #> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2 #> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1 #> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1 #> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2 #> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2 #> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4 #> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2 #> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1 #> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2 #> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2 #> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4 #> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6 #> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8 #> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":null,"dir":"Reference","previous_headings":"","what":"DEPRECATED Helper to import files correctly — file_extension","title":"DEPRECATED Helper to import files correctly — file_extension","text":"DEPRECATED Helper import files correctly","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"DEPRECATED Helper to import files correctly — file_extension","text":"","code":"file_extension(filenames)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"DEPRECATED Helper to import files correctly — file_extension","text":"filenames file names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"DEPRECATED Helper to import files correctly — file_extension","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/file_extension.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"DEPRECATED Helper to import files correctly — file_extension","text":"","code":"file_extension(list.files(here::here(\"\"))[[2]])[[1]] #> [1] \"\" file_extension(c(\"file.cd..ks\", \"file\")) #> [1] \"ks\" \"\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":null,"dir":"Reference","previous_headings":"","what":"focused_metadata — focused_metadata","title":"focused_metadata — focused_metadata","text":"Extracts limited metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"focused_metadata — focused_metadata","text":"","code":"focused_metadata(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"focused_metadata — focused_metadata","text":"metadata dataframe containing metadata vars_in_data Vector variable names dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/focused_metadata.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"focused_metadata — focused_metadata","text":"dataframe containing metadata variables dataset","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":null,"dir":"Reference","previous_headings":"","what":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"Applying as_factor data.frame variable, coerce factor.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"","code":"format_redcap_factor(data, meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"data vector meta vector REDCap choices","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"vector class \"labelled\" \"labels\" attribute","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_redcap_factor.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Converts REDCap choices to factor levels and stores in labels attribute — format_redcap_factor","text":"","code":"format_redcap_factor(sample(1:3,20,TRUE),\"1, First. | 2, second | 3, THIRD\") #>  [1] 1 3 3 2 3 2 3 2 3 2 2 1 3 2 2 3 1 2 1 1 #> attr(,\"labels\") #> First. second  THIRD  #>    \"1\"    \"2\"    \"3\"  #> attr(,\"class\") #> [1] \"labelled\""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":null,"dir":"Reference","previous_headings":"","what":"Sub-header formatting wrapper — format_subheader","title":"Sub-header formatting wrapper — format_subheader","text":"Sub-header formatting wrapper","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sub-header formatting wrapper — format_subheader","text":"","code":"format_subheader(data, tag = \"h2\")"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sub-header formatting wrapper — format_subheader","text":"data character vector tag character vector length 1","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sub-header formatting wrapper — format_subheader","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/format_subheader.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Sub-header formatting wrapper — format_subheader","text":"","code":"\"Instrument header\" |> format_subheader() #> <div class=\"rich-text-field-label\"><h2>Instrument header<\/h2><\/div>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":null,"dir":"Reference","previous_headings":"","what":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"Attempting make secure API key storage simple, way makes sense. Wrapping key_get key_set using key_list check key storage already.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"","code":"get_api_key(key.name, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"key.name character vector key name ... passed key_set","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_api_key.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Retrieve project API key if stored, if not, set and retrieve — get_api_key","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Extract attribute. Returns NA if none — get_attr","title":"Extract attribute. Returns NA if none — get_attr","text":"Extract attribute. Returns NA none","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extract attribute. Returns NA if none — get_attr","text":"","code":"get_attr(data, attr = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extract attribute. Returns NA if none — get_attr","text":"data vector attr attribute name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extract attribute. Returns NA if none — get_attr","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_attr.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extract attribute. Returns NA if none — get_attr","text":"","code":"attr(mtcars$mpg, \"label\") <- \"testing\" do.call(c, sapply(mtcars, get_attr)) #> $mpg.label #> [1] \"testing\" #>  if (FALSE) { # \\dontrun{ mtcars |>   numchar2fct(numeric.threshold = 6) |>   ds2dd_detailed() } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":null,"dir":"Reference","previous_headings":"","what":"Get the id name — get_id_name","title":"Get the id name — get_id_name","text":"Get id name","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get the id name — get_id_name","text":"","code":"get_id_name(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get the id name — get_id_name","text":"data data frame list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/get_id_name.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get the id name — get_id_name","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":null,"dir":"Reference","previous_headings":"","what":"Guess time variables based on naming pattern — guess_time_only","title":"Guess time variables based on naming pattern — guess_time_only","text":"repairing data time variables appended \"1970-01-01\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Guess time variables based on naming pattern — guess_time_only","text":"","code":"guess_time_only(   data,   validate.time = FALSE,   time.var.sel.pos = \"[Tt]i[d(me)]\",   time.var.sel.neg = \"[Dd]at[eo]\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Guess time variables based on naming pattern — guess_time_only","text":"data data.frame tibble validate.time Flag validate guessed time columns time.var.sel.pos Positive selection regex string passed `gues_time_only_filter()` sel.pos. time.var.sel.neg Negative selection regex string passed `gues_time_only_filter()` sel.neg.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Guess time variables based on naming pattern — guess_time_only","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Guess time variables based on naming pattern — guess_time_only","text":"","code":"redcapcast_data |> guess_time_only(validate.time = TRUE) #> $is.POSIX #> # A tibble: 25 × 2 #>    inclusion_time event_datetime      #>    <time>         <dttm>              #>  1 12:38:49       NA                  #>  2 10:38:57       NA                  #>  3       NA       NA                  #>  4       NA       2024-01-18 12:49:42 #>  5 12:01:07       NA                  #>  6       NA       NA                  #>  7       NA       NA                  #>  8       NA       2024-01-18 12:49:58 #>  9       NA       2024-01-18 12:50:01 #> 10       NA       2024-01-18 12:50:05 #> # ℹ 15 more rows #>  #> $is.datetime #> # A tibble: 25 × 1 #>    event_datetime      #>    <dttm>              #>  1 NA                  #>  2 NA                  #>  3 NA                  #>  4 2024-01-18 12:49:42 #>  5 NA                  #>  6 NA                  #>  7 NA                  #>  8 2024-01-18 12:49:58 #>  9 2024-01-18 12:50:01 #> 10 2024-01-18 12:50:05 #> # ℹ 15 more rows #>  #> $is.time_only #> # A tibble: 25 × 1 #>    inclusion_time #>    <time>         #>  1 12:38:49       #>  2 10:38:57       #>  3       NA       #>  4       NA       #>  5 12:01:07       #>  6       NA       #>  7       NA       #>  8       NA       #>  9       NA       #> 10       NA       #> # ℹ 15 more rows #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":null,"dir":"Reference","previous_headings":"","what":"Try at determining which are true time only variables — guess_time_only_filter","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"just try guessing data type based data class column names hoping tiny bit naming consistency. R include time-data format natively, \"hms\" class `readr` used. converted character class REDCap upload.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"","code":"guess_time_only_filter(   data,   validate = FALSE,   sel.pos = \"[Tt]i[d(me)]\",   sel.neg = \"[Dd]at[eo]\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"data data set validate flag output validation data. output list. sel.pos Positive selection regex string sel.neg Negative selection regex string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"character vector list depending `validate` flag.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/guess_time_only_filter.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Try at determining which are true time only variables — guess_time_only_filter","text":"","code":"data <- redcapcast_data data |> guess_time_only_filter() #> [1] \"inclusion_time\" data |>   guess_time_only_filter(validate = TRUE) |>   lapply(head) #> $is.POSIX #> # A tibble: 6 × 2 #>   inclusion_time event_datetime      #>   <time>         <dttm>              #> 1 12:38:49       NA                  #> 2 10:38:57       NA                  #> 3       NA       NA                  #> 4       NA       2024-01-18 12:49:42 #> 5 12:01:07       NA                  #> 6       NA       NA                  #>  #> $is.datetime #> # A tibble: 6 × 1 #>   event_datetime      #>   <dttm>              #> 1 NA                  #> 2 NA                  #> 3 NA                  #> 4 2024-01-18 12:49:42 #> 5 NA                  #> 6 NA                  #>  #> $is.time_only #> # A tibble: 6 × 1 #>   inclusion_time #>   <time>         #> 1 12:38:49       #> 2 10:38:57       #> 3       NA       #> 4       NA       #> 5 12:01:07       #> 6       NA       #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":null,"dir":"Reference","previous_headings":"","what":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"Finish incomplete haven attributes substituting missings values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"","code":"haven_all_levels(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"data haven labelled variable","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/haven_all_levels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Finish incomplete haven attributes substituting missings with values — haven_all_levels","text":"","code":"ds <- structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) haven::is.labelled(ds) #> [1] TRUE attributes(ds) #> $labels #> Unknown Refused  #>       9      10  #>  #> $class #> [1] \"haven_labelled\" #>  ds |> haven_all_levels() #>       1       2       3 Unknown Refused  #>       1       2       3       9      10"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":null,"dir":"Reference","previous_headings":"","what":"Change ","title":"Change ","text":"Change \"hms\" \"character\" REDCap upload.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Change ","text":"","code":"hms2character(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Change ","text":"data data set","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Change ","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/hms2character.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Change ","text":"","code":"data <- redcapcast_data ## data |> time_only_correction() |> hms2character()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"Simple html tag wrapping REDCap text formatting","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"","code":"html_tag_wrap(data, tag = \"h2\", extra = NULL)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"data character vector tag character vector length 1 extra character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/html_tag_wrap.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Simple html tag wrapping for REDCap text formatting — html_tag_wrap","text":"","code":"html_tag_wrap(\"Titel\", tag = \"div\", extra = 'class=\"rich-text-field-label\"') #> <div class=\"rich-text-field-label\">Titel<\/div> html_tag_wrap(\"Titel\", tag = \"h2\") #> <h2>Titel<\/h2>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests for multiple label classes — is.labelled","title":"Tests for multiple label classes — is.labelled","text":"Tests multiple label classes","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests for multiple label classes — is.labelled","text":"","code":"is.labelled(x, classes = c(\"haven_labelled\", \"labelled\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests for multiple label classes — is.labelled","text":"x data classes classes test","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tests for multiple label classes — is.labelled","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is.labelled.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests for multiple label classes — is.labelled","text":"","code":"structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |> is.labelled() #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":null,"dir":"Reference","previous_headings":"","what":"Multi missing check — is_missing","title":"Multi missing check — is_missing","text":"Multi missing check","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Multi missing check — is_missing","text":"","code":"is_missing(data, nas = c(\"\", \"NA\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Multi missing check — is_missing","text":"data character vector nas character vector strings considered NA","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_missing.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Multi missing check — is_missing","text":"logical vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if repeatable or longitudinal — is_repeated_longitudinal","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"Test repeatable longitudinal","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"","code":"is_repeated_longitudinal(   data,   generics = c(\"redcap_event_name\", \"redcap_repeat_instrument\", \"redcap_repeat_instance\") )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"data data set generics default \"redcap_event_name\", \"redcap_repeat_instrument\" \"redcap_repeat_instance\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/is_repeated_longitudinal.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if repeatable or longitudinal — is_repeated_longitudinal","text":"","code":"is_repeated_longitudinal(c(\"record_id\", \"age\", \"record_id\", \"gender\")) #> [1] FALSE is_repeated_longitudinal(redcapcast_data) #> [1] TRUE is_repeated_longitudinal(list(redcapcast_data)) #> [1] TRUE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":null,"dir":"Reference","previous_headings":"","what":"Completion marking based on completed upload — mark_complete","title":"Completion marking based on completed upload — mark_complete","text":"Completion marking based completed upload","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Completion marking based on completed upload — mark_complete","text":"","code":"mark_complete(upload, ls)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Completion marking based on completed upload — mark_complete","text":"upload output list `REDCapR::redcap_write()` ls output list `ds2dd_detailed()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mark_complete.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Completion marking based on completed upload — mark_complete","text":"list `REDCapR::redcap_write()` results","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":null,"dir":"Reference","previous_headings":"","what":"Match fields to forms — match_fields_to_form","title":"Match fields to forms — match_fields_to_form","text":"Match fields forms","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Match fields to forms — match_fields_to_form","text":"","code":"match_fields_to_form(metadata, vars_in_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Match fields to forms — match_fields_to_form","text":"metadata data frame containing field names form names vars_in_data character vector variable names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/match_fields_to_form.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Match fields to forms — match_fields_to_form","text":"data frame containing field names form names","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":null,"dir":"Reference","previous_headings":"","what":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"mtcars dataset slightly modified use Shiny app upload demonstration","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"","code":"data(mtcars_redcap)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/mtcars_redcap.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"mtcars dataset slightly modified to use for Shiny app upload demonstration — mtcars_redcap","text":"data frame 13 variables: record_id ID, numeric mpg ID, numeric cyl ID, numeric disp ID, numeric hp ID, numeric drat ID, numeric wt ID, numeric qsec ID, numeric vs ID, numeric ID, numeric gear ID, numeric carb ID, numeric name original rownames, charater","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":null,"dir":"Reference","previous_headings":"","what":"Get named vector of factor levels and values — named_levels","title":"Get named vector of factor levels and values — named_levels","text":"Get named vector factor levels values","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Get named vector of factor levels and values — named_levels","text":"","code":"named_levels(   data,   label = \"labels\",   na.label = NULL,   na.value = 99,   sort.numeric = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Get named vector of factor levels and values — named_levels","text":"data factor label character string attribute named vector factor labels na.label character string refactor NA values. Default NULL. na.value new value NA strings. Ignored na.label NULL. Default 99. sort.numeric sort factor levels levels numeric. Default TRUE","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Get named vector of factor levels and values — named_levels","text":"named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/named_levels.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Get named vector of factor levels and values — named_levels","text":"","code":"structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"haven_labelled\" ) |>   as_factor() |>   named_levels() #>       1       2       3 Refused Unknown  #>       1       2       3      10       9  structure(c(1, 2, 3, 2, 10, 9),   labels = c(Unknown = 9, Refused = 10),   class = \"labelled\" ) |>   as_factor() |>   named_levels() #>       1       2       3 Refused Unknown  #>       1       2       3      10       9"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":null,"dir":"Reference","previous_headings":"","what":"Nav_bar defining function for shiny ui — nav_bar_page","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"Nav_bar defining function shiny ui","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"","code":"nav_bar_page()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/nav_bar_page.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Nav_bar defining function for shiny ui — nav_bar_page","text":"shiny object","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":null,"dir":"Reference","previous_headings":"","what":"Applying var2fct across data set — numchar2fct","title":"Applying var2fct across data set — numchar2fct","text":"Individual thresholds character numeric columns","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Applying var2fct across data set — numchar2fct","text":"","code":"numchar2fct(data, numeric.threshold = 6, character.throshold = 6)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Applying var2fct across data set — numchar2fct","text":"data dataset. data.frame tibble numeric.threshold threshold var2fct numeric columns. Default 6. character.throshold threshold var2fct character columns. Default 6.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Applying var2fct across data set — numchar2fct","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/numchar2fct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Applying var2fct across data set — numchar2fct","text":"","code":"mtcars |> str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ... if (FALSE) { # \\dontrun{ mtcars |>   numchar2fct(numeric.threshold = 6) |>   str() } # }"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Helper to auto-parse un-formatted data with haven and readr — parse_data","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"Helper auto-parse un-formatted data haven readr","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"","code":"parse_data(   data,   guess_type = TRUE,   col_types = NULL,   locale = readr::default_locale(),   ignore.vars = \"cpr\",   ... )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"data data.frame tibble guess_type logical guess type readr col_types specify col_types using readr semantics. Ignored guess_type TRUE locale option specify locale. Defaults readr::default_locale(). ignore.vars specify column names columns ignore parsing ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"data.frame tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/parse_data.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Helper to auto-parse un-formatted data with haven and readr — parse_data","text":"","code":"mtcars |>   parse_data() |>   str() #> 'data.frame':\t32 obs. of  11 variables: #>  $ mpg : num  21 21 22.8 21.4 18.7 18.1 14.3 24.4 22.8 19.2 ... #>  $ cyl : num  6 6 4 6 8 6 8 4 4 6 ... #>  $ disp: num  160 160 108 258 360 ... #>  $ hp  : num  110 110 93 110 175 105 245 62 95 123 ... #>  $ drat: num  3.9 3.9 3.85 3.08 3.15 2.76 3.21 3.69 3.92 3.92 ... #>  $ wt  : num  2.62 2.88 2.32 3.21 3.44 ... #>  $ qsec: num  16.5 17 18.6 19.4 17 ... #>  $ vs  : num  0 0 1 1 0 1 0 1 1 1 ... #>  $ am  : num  1 1 1 0 0 0 0 0 0 0 ... #>  $ gear: num  4 4 4 3 3 3 3 4 4 4 ... #>  $ carb: num  4 4 1 1 2 1 4 2 2 4 ..."},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":null,"dir":"Reference","previous_headings":"","what":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"Tests vector can interpreted numeric without introducing NAs coercion","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"","code":"possibly_numeric(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"data vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_numeric.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Tests if vector can be interpreted as numeric without introducing NAs by coercion — possibly_numeric","text":"","code":"c(\"1\",\"5\") |> possibly_numeric() #> [1] TRUE c(\"1\",\"5\",\"e\") |> possibly_numeric() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":null,"dir":"Reference","previous_headings":"","what":"Test if vector can be interpreted as roman numerals — possibly_roman","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"Test vector can interpreted roman numerals","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"","code":"possibly_roman(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"data character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"logical","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/possibly_roman.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Test if vector can be interpreted as roman numerals — possibly_roman","text":"","code":"sample(1:100, 10) |>   as.roman() |>   possibly_roman() #> [1] TRUE sample(c(TRUE, FALSE), 10, TRUE) |> possibly_roman() #> [1] FALSE rep(NA, 10) |> possibly_roman() #> [1] FALSE"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing character — process_user_input.character","title":"User input processing character — process_user_input.character","text":"User input processing character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing character — process_user_input.character","text":"","code":"# S3 method for class 'character' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing character — process_user_input.character","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.character.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing character — process_user_input.character","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing data.frame — process_user_input.data.frame","title":"User input processing data.frame — process_user_input.data.frame","text":"User input processing data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing data.frame — process_user_input.data.frame","text":"","code":"# S3 method for class 'data.frame' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing data.frame — process_user_input.data.frame","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.data.frame.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing data.frame — process_user_input.data.frame","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing default — process_user_input.default","title":"User input processing default — process_user_input.default","text":"User input processing default","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing default — process_user_input.default","text":"","code":"# Default S3 method process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing default — process_user_input.default","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.default.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing default — process_user_input.default","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing — process_user_input","title":"User input processing — process_user_input","text":"User input processing","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing — process_user_input","text":"","code":"process_user_input(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing — process_user_input","text":"x input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing — process_user_input","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":null,"dir":"Reference","previous_headings":"","what":"User input processing response — process_user_input.response","title":"User input processing response — process_user_input.response","text":"User input processing response","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"User input processing response — process_user_input.response","text":"","code":"# S3 method for class 'response' process_user_input(x, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"User input processing response — process_user_input.response","text":"x input ... ignored","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/process_user_input.response.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"User input processing response — process_user_input.response","text":"processed input","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":null,"dir":"Reference","previous_headings":"","what":"Flexible file import based on extension — read_input","title":"Flexible file import based on extension — read_input","text":"Flexible file import based extension","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(file, consider.na = c(\"NA\", \"\\\"\\\"\", \"\"))"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Flexible file import based on extension — read_input","text":"file file name consider.na character vector strings consider NAs","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Flexible file import based on extension — read_input","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_input.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Flexible file import based on extension — read_input","text":"","code":"read_input(\"https://raw.githubusercontent.com/agdamsbo/cognitive.index.lookup/main/data/sample.csv\") #> Rows: 28 Columns: 8 #> ── Column specification ──────────────────────────────────────────────────────── #> Delimiter: \",\" #> dbl (8): id, ab, age, imm, vis, ver, att, del #>  #> ℹ Use `spec()` to retrieve the full column specification for this data. #> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message. #> # A tibble: 28 × 8 #>       id    ab   age   imm   vis   ver   att   del #>    <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> <dbl> #>  1     1     1    74    38    35    30    29    35 #>  2     1     2    69    36    36    21    27    37 #>  3     2     1    63    32    31    26    34    38 #>  4     2     2    64    37    34    26    36    46 #>  5     3     1    69    39    33    31    47    29 #>  6     3     2    70    40    36    31    46    25 #>  7     4     1    79    44    37    20    37    36 #>  8     4     2    81    35    36    31    37    40 #>  9     5     1    77    35    26    17    20    36 #> 10     5     2    80    29    34    18    23    36 #> # ℹ 18 more rows"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":null,"dir":"Reference","previous_headings":"","what":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"Convenience function download complete instrument, using token storage keyring.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"","code":"read_redcap_instrument(   key,   uri,   instrument,   raw_or_label = \"raw\",   id_name = \"record_id\",   records = NULL )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"key key name standard keyring token retrieval. uri REDCap database API uri instrument instrument name raw_or_label raw label passed `REDCapR::redcap_read()` id_name id variable name. Default \"record_id\". records specify records download. Index numbers. Numeric vector.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_instrument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convenience function to download complete instrument, using token storage in keyring. — read_redcap_instrument","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":null,"dir":"Reference","previous_headings":"","what":"Download REDCap data — read_redcap_tables","title":"Download REDCap data — read_redcap_tables","text":"Implementation passed REDCap_split focused data acquisition approach using passed redcap_read downloading specified fields, forms /events using built-focused_metadata including clean-. Works classical longitudinal projects without repeating instruments. preserve metadata data.frames labels.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Download REDCap data — read_redcap_tables","text":"","code":"read_redcap_tables(   uri,   token,   records = NULL,   fields = NULL,   events = NULL,   forms = NULL,   raw_or_label = c(\"raw\", \"label\", \"both\"),   split_forms = \"all\",   ... )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Download REDCap data — read_redcap_tables","text":"uri REDCap database API uri token API token records records download fields fields download events events download forms forms download raw_or_label raw label tags. Can \"raw\", \"label\" \"\". * \"raw\": Standard redcap_read method get raw values.   * \"label\": Standard redcap_read method get label values.   * \"\": Get raw values REDCap labels applied labels. Use   as_factor format factors original labels use    `gtsummary` package functions like tbl_summary   easily get beautiful tables original labels REDCap. Use   fct_drop drop empty levels. split_forms Whether split \"repeating\" \"\" forms, default . ... passed redcap_read","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Download REDCap data — read_redcap_tables","text":"list instruments","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/read_redcap_tables.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Download REDCap data — read_redcap_tables","text":"","code":"# Examples will be provided later"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":null,"dir":"Reference","previous_headings":"","what":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"Converts list REDCap data.frames long wide format. essence wrapper pivot_wider function applied REDCap output (read_redcap_tables) manually split REDCap_split.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"","code":"redcap_wider(   data,   event.glue = \"{.value}____{redcap_event_name}\",   inst.glue = \"{.value}____{redcap_repeat_instance}\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"data list data frames event.glue glue string repeated events naming inst.glue glue string repeated instruments naming","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"data.frame wide format","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcap_wider.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Transforms list of REDCap data.frames to a single wide data.frame — redcap_wider","text":"","code":"# Longitudinal list1 <- list(   data.frame(     record_id = c(1, 2, 1, 2),     redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"),     age = c(25, 26, 27, 28)   ),   data.frame(     record_id = c(1, 2),     redcap_event_name = c(\"baseline\", \"baseline\"),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list1) #> Joining with `by = join_by(record_id)` #> # A tibble: 2 × 4 #>   record_id age____baseline age____followup gender #>       <dbl>           <dbl>           <dbl> <chr>  #> 1         1              25              27 male   #> 2         2              26              28 female # Simpel with two instruments list2 <- list(   data.frame(     record_id = c(1, 2),     age = c(25, 26)   ),   data.frame(     record_id = c(1, 2),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list2) #> Joining with `by = join_by(record_id)` #>   record_id age gender #> 1         1  25   male #> 2         2  26 female # Simple with single instrument list3 <- list(data.frame(   record_id = c(1, 2),   age = c(25, 26) )) redcap_wider(list3) #>   record_id age #> 1         1  25 #> 2         2  26 # Longitudinal with repeatable instruments list4 <- list(   data.frame(     record_id = c(1, 2, 1, 2),     redcap_event_name = c(\"baseline\", \"baseline\", \"followup\", \"followup\"),     age = c(25, 26, 27, 28)   ),   data.frame(     record_id = c(1, 1, 1, 1, 2, 2, 2, 2),     redcap_event_name = c(       \"baseline\", \"baseline\", \"followup\", \"followup\",       \"baseline\", \"baseline\", \"followup\", \"followup\"     ),     redcap_repeat_instrument = \"walk\",     redcap_repeat_instance = c(1, 2, 1, 2, 1, 2, 1, 2),     dist = c(40, 32, 25, 33, 28, 24, 23, 36)   ),   data.frame(     record_id = c(1, 2),     redcap_event_name = c(\"baseline\", \"baseline\"),     gender = c(\"male\", \"female\")   ) ) redcap_wider(list4) #> Joining with `by = join_by(record_id)` #> Joining with `by = join_by(record_id)` #> # A tibble: 2 × 8 #>   record_id age____baseline age____followup dist____1____baseline #>       <dbl>           <dbl>           <dbl>                 <dbl> #> 1         1              25              27                    40 #> 2         2              26              28                    28 #> # ℹ 4 more variables: dist____1____followup <dbl>, dist____2____baseline <dbl>, #> #   dist____2____followup <dbl>, gender <chr>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":null,"dir":"Reference","previous_headings":"","what":"Data set for demonstration — redcapcast_data","title":"Data set for demonstration — redcapcast_data","text":"small dataset REDCap database demonstrational purposes. Contains synthetic data.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Data set for demonstration — redcapcast_data","text":"","code":"data(redcapcast_data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_data.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"Data set for demonstration — redcapcast_data","text":"data frame 22 variables: record_id ID, numeric redcap_event_name Event name, character redcap_repeat_instrument Repeat instrument, character redcap_repeat_instance Repeat instance, numeric cpr CPR number, character inclusion Inclusion date, Date inclusion_time Inclusion time, hms dob Date birth, Date age Age decimal, numeric age_integer Age integer, numeric sex Legal sex, character cohabitation Cohabitation status, character con_calc con_calc con_mrs con_mrs consensus_complete consensus_complete hypertension Hypertension, character diabetes diabetes, character region region, character baseline_data_start_complete Completed, character mrs_assessed mRS Assessed, character mrs_date Assesment date, Date mrs_score Categorical score, numeric mrs_complete Complete, numeric event_datetime Event datetime, POSIXct event_age Age time event, numeric event_type Event type, character new_event_complete Completed, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":null,"dir":"Reference","previous_headings":"","what":"REDCap metadata from data base — redcapcast_meta","title":"REDCap metadata from data base — redcapcast_meta","text":"metadata dataset REDCap database demonstration purposes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"REDCap metadata from data base — redcapcast_meta","text":"","code":"data(redcapcast_meta)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/redcapcast_meta.html","id":"format","dir":"Reference","previous_headings":"","what":"Format","title":"REDCap metadata from data base — redcapcast_meta","text":"data frame 22 variables: field_name field_name, character form_name form_name, character section_header section_header, character field_type field_type, character field_label field_label, character select_choices_or_calculations select_choices_or_calculations, character field_note field_note, character text_validation_type_or_show_slider_number text_validation_type_or_show_slider_number, character text_validation_min text_validation_min, character text_validation_max text_validation_max, character identifier identifier, character branching_logic branching_logic, character required_field required_field, character custom_alignment custom_alignment, character question_number question_number, character matrix_group_name matrix_group_name, character matrix_ranking matrix_ranking, character field_annotation field_annotation, character","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":null,"dir":"Reference","previous_headings":"","what":"Replace curly apostrophes and quotes from word — replace_curly_quote","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"Copied textclean, updated since 2018 CRAN. Github:https://github.com/trinker/textclean","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"","code":"replace_curly_quote(x)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"x character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/replace_curly_quote.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Replace curly apostrophes and quotes from word — replace_curly_quote","text":"character vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":null,"dir":"Reference","previous_headings":"","what":"Sanitize list of data frames — sanitize_split","title":"Sanitize list of data frames — sanitize_split","text":"Removing empty rows","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Sanitize list of data frames — sanitize_split","text":"","code":"sanitize_split(   l,   generic.names = c(\"redcap_event_name\", \"redcap_repeat_instrument\",     \"redcap_repeat_instance\"),   drop.complete = TRUE,   drop.empty = TRUE )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Sanitize list of data frames — sanitize_split","text":"l list data frames. generic.names vector generic names excluded. drop.complete logical remove generic REDCap variables indicating instrument completion. Default TRUE. drop.empty logical remove variables NAs Default TRUE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/sanitize_split.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Sanitize list of data frames — sanitize_split","text":"list data frames generic names excluded.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":null,"dir":"Reference","previous_headings":"","what":"Set attributes for named attribute. Appends if attr is NULL — set_attr","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"Set attributes named attribute. Appends attr NULL","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"","code":"set_attr(data, label, attr = NULL, overwrite = FALSE)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"data vector label label attr attribute name overwrite overwrite existing attributes. Default FALSE.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/set_attr.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Set attributes for named attribute. Appends if attr is NULL — set_attr","text":"vector attribute","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":null,"dir":"Reference","previous_headings":"","what":"Launch the included Shiny-app for database casting and upload — shiny_cast","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"Wraps shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"","code":"shiny_cast(...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"... Arguments passed shiny::runApp()","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"shiny app","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/shiny_cast.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Launch the included Shiny-app for database casting and upload — shiny_cast","text":"","code":"# shiny_cast()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":null,"dir":"Reference","previous_headings":"","what":"Split a data frame into separate tables for each form — split_non_repeating_forms","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"Split data frame separate tables form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"split_non_repeating_forms(table, universal_fields, fields)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"table data frame universal_fields character vector fields included every table fields two-column matrix containing names fields included form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"list data frames, one non-repeating form","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/split_non_repeating_forms.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Split a data frame into separate tables for each form — split_non_repeating_forms","text":"","code":"# Create a table table <- data.frame(   id = c(1, 2, 3, 4, 5),   form_a_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_a_age = c(25, 30, 25, 15, 20),   form_b_name = c(\"John\", \"Alice\", \"Bob\", \"Eve\", \"Mallory\"),   form_b_gender = c(\"M\", \"F\", \"M\", \"F\", \"F\") )  # Create the universal fields universal_fields <- c(\"id\")  # Create the fields fields <- matrix(   c(     \"form_a_name\", \"form_a\",     \"form_a_age\", \"form_a\",     \"form_b_name\", \"form_b\",     \"form_b_gender\", \"form_b\"   ),   ncol = 2, byrow = TRUE )  # Split the table split_non_repeating_forms(table, universal_fields, fields) #> $form_a_age #>   id #> 1  1 #> 2  2 #> 3  3 #> 4  4 #> 5  5 #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":null,"dir":"Reference","previous_headings":"","what":"Extended string splitting — strsplitx","title":"Extended string splitting — strsplitx","text":"Can used substitute base function. Main claim fame easing split around defined delimiter, see example.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Extended string splitting — strsplitx","text":"","code":"strsplitx(x, split, type = \"classic\", perl = FALSE, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Extended string splitting — strsplitx","text":"x data split delimiter type Split type. Can c(\"classic\", \"\", \"\", \"around\") perl perl param strsplit() ... additional parameters passed base strsplit handling splits","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Extended string splitting — strsplitx","text":"list","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/strsplitx.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Extended string splitting — strsplitx","text":"","code":"test <- c(\"12 months follow-up\", \"3 steps\", \"mRS 6 weeks\", \"Counting to 231 now\") strsplitx(test, \"[0-9]\", type = \"around\") #> [[1]] #> [1] \"1\"                 \"2\"                 \" months follow-up\" #>  #> [[2]] #> [1] \"3\"      \" steps\" #>  #> [[3]] #> [1] \"mRS \"   \"6\"      \" weeks\" #>  #> [[4]] #> [1] \"Counting to \" \"2\"            \"3\"            \"1\"            \" now\"         #>"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":null,"dir":"Reference","previous_headings":"","what":"Transfer variable name suffix to label in widened data — suffix2label","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"Transfer variable name suffix label widened data","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"","code":"suffix2label(   data,   suffix.sep = \"____\",   attr = \"label\",   glue.str = \"{label} ({paste(suffixes,collapse=', ')})\" )"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"data data.frame suffix.sep string split suffix(es). Passed strsplit attr label attribute. Default \"label\" glue.str glue string new label. Available variables \"label\" \"suffixes\"","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/suffix2label.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Transfer variable name suffix to label in widened data — suffix2label","text":"data.frame","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":null,"dir":"Reference","previous_headings":"","what":"Correction based on time_only_filter function — time_only_correction","title":"Correction based on time_only_filter function — time_only_correction","text":"Correction based time_only_filter function","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Correction based on time_only_filter function — time_only_correction","text":"","code":"time_only_correction(data, ...)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Correction based on time_only_filter function — time_only_correction","text":"data data set ... arguments passed `guess_time_only_filter()`","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Correction based on time_only_filter function — time_only_correction","text":"tibble","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/time_only_correction.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Correction based on time_only_filter function — time_only_correction","text":"","code":"data <- redcapcast_data ## data |> time_only_correction()"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":null,"dir":"Reference","previous_headings":"","what":"Convert vector to factor based on threshold of number of unique levels — var2fct","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"wrapper forcats::as_factor, sorts numeric vectors factoring, levels character vectors order appearance.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"","code":"var2fct(data, unique.n)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"data vector data.frame column unique.n threshold convert class factor","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/var2fct.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Convert vector to factor based on threshold of number of unique levels — var2fct","text":"","code":"sample(seq_len(4), 20, TRUE) |>   var2fct(6) |>   summary() #> 1 2 3 4  #> 7 3 6 4  sample(letters, 20) |>   var2fct(6) |>   summary() #>    Length     Class      Mode  #>        20 character character  sample(letters[1:4], 20, TRUE) |> var2fct(6) #>  [1] a c c a b c d c c b d b a d d c b d b a #> Levels: a c b d"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":null,"dir":"Reference","previous_headings":"","what":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"Named vector REDCap choices (`wrapping compact_vec()`)","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"","code":"vec2choice(data)"},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"data named vector","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"character string","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/reference/vec2choice.html","id":"ref-examples","dir":"Reference","previous_headings":"","what":"Examples","title":"Named vector to REDCap choices (`wrapping compact_vec()`) — vec2choice","text":"","code":"sample(seq_len(4), 20, TRUE) |>   as_factor() |>   named_levels() |>   sort() |>   vec2choice() #> [1] \"1, 1 | 2, 2 | 3, 3 | 4, 4\""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2511","dir":"Changelog","previous_headings":"","what":"REDCapCAST 25.1.1","title":"REDCapCAST 25.1.1","text":"newly introduced extension forcats::fct_drop() corrected work intended method. Conversion column names field_names aligning better REDCap naming. Shorten variable names 100 characters (REDCap criteria; note recommended variable name length <26) Fixed params conflict easy_redcap() specifying raw_or_label.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.12.1","title":"REDCapCAST 24.12.1","text":"CRAN release: 2024-12-02 release attempts solve problems hosting shiny_cast app, also implementing functions preserve much meta data possible REDCap database exporting data. hosting shinyapps.io given lot trouble recently. Modified package structure little around shiny_cast(), accommodate alternative hosting approach package functions included script instead requiring package. NEW: new option raw_or_label read_redcap_tables() added: “”. Get raw values REDCap labels applied labels. Use as_factor() format factors original labels use gtsummary package easily get beautiful tables original labels REDCap. Use fct_drop() drop empty levels. NEW: fct_drop() added extension forcats::fct_drop(), works across data.frames. Use fct_drop(). CHANGE: default data export method easy_redcap() changed use new labelled data export read_redcap_tables().","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24113","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.3","title":"REDCapCAST 24.11.3","text":"BUG: shiny_cast() fails load missed loading REDCapCAST library ui.r. Fixed. Tests great.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24112","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.2","title":"REDCapCAST 24.11.2","text":"CRAN release: 2024-11-22 24.11.1 rejected CRAN based wrong title capitalisation. opportunity extend package overhaul. actually turned major step towards usable shiny app received focus. implemented option specify categorical variables factorize, modified version {forcats} {haven}’s as_factor(), preserve attributes applied data able upload cast REDCap meta data richly formatted data (use .rds). matter input type, input parsed using default options {readr} package. Also avoid mis-labelling, logicals converted factors REDCap truefalse class follows different naming conversion compared R. Also correct support variable labels field labels (use .rds formatted data label labelled::var_label()) Vignettes documentation restructured. package detached REDCapRITS, originally forked . data split function kept, testing rewritten. projects evolved away original fork.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24111","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.11.1","title":"REDCapCAST 24.11.1","text":"Revised tests. Documentation slightly updated highlight shiny app casting REDCap metadata. working hosting Shiny Server.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-11-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 24.11.1","text":"Bug: ‘form.name’ specified ‘ds2dd_detailed()’ ignored. Corrected ignored ‘form.sep’ specified. Added handling re-occurring form.sep pattern. New: export_redcap_instrument() new version create_instrument_meta(), export single instrument. Multiple instrument export can done lapply() purrr::map(). allows inclusion functionality Shiny implementation easier handle. create_instrument_meta() deprecated. Improved: shiny_cast() app updated actually work install package clones whole repository.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"shiny-24-11-1","dir":"Changelog","previous_headings":"","what":"Shiny:","title":"REDCapCAST 24.11.1","text":"New: Major overhaul app interface introduction bslib building page. Also Detailed documentation added app workflow. New: Export REDCap instrument ready add database based uploaded spreadsheet. thanks export_redcap_instrument() function. functionality intended projects production adding instruments handled manually API upload. Bug: Export datadictionary “” instead “NA” NAs. Upload REDCap failed. anymore. shiny implementation included package. Implementing shinylive may looked later.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24103","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.10.3","title":"REDCapCAST 24.10.3","text":"CRAN release: 2024-10-03 Updated links spelling.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-24101","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.10.1","title":"REDCapCAST 24.10.1","text":"Minor changes pass tests renv . rhub really running smooth previously.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2461","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.6.1","title":"REDCapCAST 24.6.1","text":"CRAN release: 2024-06-07","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-6-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.6.1","text":"Fix: read_redcap_tables(): field names testing allows include “[form_name]_complete” fields. Fix: ds2dd_detailed(): default record ID name now “record_id”, REDCap default. Default still use first column name. Support added interpret column name prefix suffix instrument names. See examples. New: create_instrument_meta(): creates zip instrument files allow adding new instruments project production. Takes data dictionary input creates zip instrument specified form_name column. New: doc2dd(): function convert document table data dictionary. allows specify instrument whole data dictionary text document, easier work easily modifiable. generic case data frame variable names values column. format like REDCap data dictionary, gives options formatting. related functions data handling formatting. One interesting function case_match_regex_list(), allows dynamic dplyr::case_when()-like approach regex-matching. think neat least.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-and-more-24-6-1","dir":"Changelog","previous_headings":"","what":"Documentation and more","title":"REDCapCAST 24.6.1","text":"Dependencies: order deploy shiny_cast() shinylive, need remove curl dependency. accomplish , shiny_deploy() helper functions moved package project.aid. realising REDCapR curl dependency, culprit. REDCapCAST going shinylive web-app without removing REDCapR dependency REDCap database interaction, defy purpose. ’ll stick hosted Shiny app instead.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2421","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.2.1","title":"REDCapCAST 24.2.1","text":"CRAN release: 2024-02-28","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-2-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.2.1","text":"Fix: ds2dd(): uses correct default dd column names. deprecated. Fix: easy_redcap(): fixed actually allow project naming. also specifically asks uri. widening updated work. Fix: redcap_wider(): updated accept formats allow handling simple projects without repeating instruments longitudinal. Fix: read_redcap_tables(): now handles non-longitudinal project without repeatable instruments. NEW: ds2dd_detailed(): extension ds2dd(), serves preserve much metadata possible automatically. Depends group helper functions also introduced. special note guess_time_only_filter(), try guess columns/variables formatted time formats. Supports hms time format. DETAILED INSTRUCTION VIGNETTE PENDING. NEW: read_redcap_instrument(): convenience function retrieve complete instrument. Goes little focused approach. REDCapR::redcap_read() can specify form download. also specify record id variable though. done read_redcap_instrument(). Nothing fancy. NEW: shiny_cast(): Shiny application ease process converting spreadsheet/data set REDCap database. app runs locally data transferred securely. can just create upload data dictionary, can also transfer given data process. plan host app shinyapps.io, now can run locally.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"other-24-2-1","dir":"Changelog","previous_headings":"","what":"Other","title":"REDCapCAST 24.2.1","text":"believe renv now added runs correctly. clone, renv::restore() install necessary package modify package. seems always back forth. renv may way . Added Code Conduct.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2411","dir":"Changelog","previous_headings":"","what":"REDCapCAST 24.1.1","title":"REDCapCAST 24.1.1","text":"CRAN release: 2024-01-09","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-24-1-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 24.1.1","text":"Fix: read_redcap_tables(): checking form names based data dictionary allow handling non-longitudinal projects. Prints invalid form names invalid event names. invalid form names supplied REDCapR::redcap_read() (backbone), forms exported, want focused approach. Invalid event names give output rather peculiar formatting. Checking field names validity also added.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-23121","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.12.1","title":"REDCapCAST 23.12.1","text":"CRAN release: 2023-12-20 One new function ease secure dataset retrieval bug fixes.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-12-1","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.12.1","text":"New: easy_redcap() function ease retrieval dataset read_redcap_tables() keyring-package based key storage, handles secure API set, storage retrieval. Relies small helper function, get_api_key(), wraps relevant keyring-functions. Includes option cast data wide format flag widen.data. Fix: REDCap_split(): using function , supplying data set check boxes fail metadata supplied tibble. Metadata now converted data.frame. Fixed. Fix: read_redcap_tables(): fixed bug supplying events.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2362","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.2","title":"REDCapCAST 23.6.2","text":"CRAN release: 2023-07-04 version marks introduction helper functions handle database creation.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-6-2","dir":"Changelog","previous_headings":"","what":"Functions","title":"REDCapCAST 23.6.2","text":"New: ds2dd() function migrating stRoke-package. Assists building data dictionary REDCap dataset. New: strsplitx() function ease string splitting extension base::strsplit(). Inspiration https://stackoverflow.com//11014253/21019325 https://www.r-bloggers.com/2018/04/strsplit--keeping--delimiter/. New: d2n() function converts single digits written numbers. Used sanitize variable form names REDCap database creation. universal number word suggest english::word() xfun::numbers_to_words(), though testing .","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"redcapcast-2361","dir":"Changelog","previous_headings":"","what":"REDCapCAST 23.6.1","title":"REDCapCAST 23.6.1","text":"CRAN release: 2023-06-06","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-6-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.6.1","text":"Updated description. Look! hex icon! Heading CRAN.","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-4-1","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.4.1","text":"Aiming CRAN","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"documentation-23-3-2","dir":"Changelog","previous_headings":"","what":"Documentation:","title":"REDCapCAST 23.3.2","text":"Page added. Vignettes follow. GithubActions tests added code coverage assessed. Badge galore..","code":""},{"path":[]},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"new-name-redcapcast-23-3-1","dir":"Changelog","previous_headings":"","what":"New name: REDCapCAST","title":"REDCapCAST 23.3.1","text":"reflect new functions limitation working R, changed naming fork, still, course, maintaining status fork. versioning moved monthly naming convention. main goal package keep option export defined subset whole dataset REDCap server made possible REDCapR::redcap_read() function, combine work put REDCapRITS package handling longitudinal projects /projects repeated instruments.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"functions-23-3-1","dir":"Changelog","previous_headings":"","what":"Functions:","title":"REDCapCAST 23.3.1","text":"read_redcap_tables() NEW: function mainly implementation combined use REDCapR::redcap_read() REDCap_split() maintain focused nature REDCapR::redcap_read(), download specified data. Also implements tests valid form names event names. usual fall-back solution get data. redcap_wider() NEW: function pivots long data frames read_redcap_tables() using tidyr::pivot_wider(). focused_metadata() NEW: hidden helper function enable focused data acquisition approach handle subset metadata corresponding focused dataset.","code":""},{"path":"https://agdamsbo.github.io/REDCapCAST/news/index.html","id":"notes-23-3-1","dir":"Changelog","previous_headings":"","what":"Notes:","title":"REDCapCAST 23.3.1","text":"metadata handling IMPROVED: improved handling different column names matadata (DataDictionary) REDCap dependent whether acquired thorugh api og downloaded server.","code":""}]
diff --git a/sitemap.xml b/sitemap.xml
index 29b49c9..345792d 100644
--- a/sitemap.xml
+++ b/sitemap.xml
@@ -25,6 +25,7 @@
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/compact_vec.html</loc></url>
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/create_html_table.html</loc></url>
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/create_instrument_meta.html</loc></url>
+<url><loc>https://agdamsbo.github.io/REDCapCAST/reference/cut_string_length.html</loc></url>
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/d2w.html</loc></url>
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/doc2dd.html</loc></url>
 <url><loc>https://agdamsbo.github.io/REDCapCAST/reference/ds2dd.html</loc></url>
