mirror of
https://github.com/agdamsbo/REDCapCAST.git
synced 2024-11-21 13:00:23 +01:00
specify ID column
This commit is contained in:
parent
0600adcce7
commit
69e1520aff
@ -24,30 +24,30 @@ server <- function(input, output, session) {
|
||||
out <- read_input(input$ds$datapath)
|
||||
|
||||
# Saves labels to reapply later
|
||||
labels <- lapply(out, get_attr)
|
||||
# labels <- lapply(out, get_attr)
|
||||
|
||||
out <- out |>
|
||||
## Parses data with readr functions
|
||||
parse_data() |>
|
||||
## Converts logical to factor, which overwrites attributes
|
||||
##
|
||||
dplyr::mutate(dplyr::across(dplyr::where(is.logical), forcats::as_factor))
|
||||
dplyr::mutate(dplyr::across(dplyr::where(is.logical), as_factor))
|
||||
|
||||
if (!is.null(input$factor_vars)) {
|
||||
out <- out |>
|
||||
dplyr::mutate(
|
||||
dplyr::across(
|
||||
dplyr::all_of(input$factor_vars),
|
||||
forcats::as_factor
|
||||
as_factor
|
||||
)
|
||||
)
|
||||
}
|
||||
|
||||
# Old attributes are appended
|
||||
out <- purrr::imap(out,\(.x,.i){
|
||||
set_attr(.x,labels[[.i]])
|
||||
}) |>
|
||||
dplyr::bind_cols()
|
||||
# out <- purrr::imap(out,\(.x,.i){
|
||||
# set_attr(.x,labels[[.i]])
|
||||
# }) |>
|
||||
# dplyr::bind_cols()
|
||||
|
||||
out
|
||||
})
|
||||
@ -62,7 +62,10 @@ server <- function(input, output, session) {
|
||||
dd <- shiny::reactive({
|
||||
shiny::req(input$ds)
|
||||
v$file <- "loaded"
|
||||
ds2dd_detailed(data = dat())
|
||||
ds2dd_detailed(
|
||||
data = dat(),
|
||||
add.auto.id = input$add_id=="yes"
|
||||
)
|
||||
})
|
||||
|
||||
output$uploaded <- shiny::reactive({
|
||||
@ -86,6 +89,18 @@ server <- function(input, output, session) {
|
||||
)
|
||||
})
|
||||
|
||||
## Specify ID if necessary
|
||||
# output$id_var <- shiny::renderUI({
|
||||
# shiny::req(input$ds)
|
||||
# selectizeInput(
|
||||
# inputId = "id_var",
|
||||
# selected = colnames(dat())[1],
|
||||
# label = "ID variable",
|
||||
# choices = colnames(dat())[-match(colnames(dat()),input$factor_vars)],
|
||||
# multiple = FALSE
|
||||
# )
|
||||
# })
|
||||
|
||||
output$data.tbl <- gt::render_gt(
|
||||
dd() |>
|
||||
purrr::pluck("data") |>
|
||||
@ -157,7 +172,9 @@ server <- function(input, output, session) {
|
||||
output$downloadInstrument <- shiny::downloadHandler(
|
||||
filename = paste0("REDCapCAST_instrument", Sys.Date(), ".zip"),
|
||||
content = function(file) {
|
||||
export_redcap_instrument(purrr::pluck(dd(), "meta"), file)
|
||||
export_redcap_instrument(purrr::pluck(dd(), "meta"),
|
||||
file = file,
|
||||
record.id = ifelse(input$add_id=="none",NA,names(dat())[1]))
|
||||
}
|
||||
)
|
||||
|
||||
|
@ -30,6 +30,17 @@ ui <-
|
||||
# This has been solved by adding an arbitrary button to load data - which was abandoned again
|
||||
shiny::conditionalPanel(
|
||||
condition = "output.uploaded=='yes'",
|
||||
shiny::radioButtons(
|
||||
inputId = "add_id",
|
||||
label = "Add ID, or use first column?",
|
||||
selected = "no",
|
||||
inline = TRUE,
|
||||
choices = list(
|
||||
"First column" = "no",
|
||||
"Add ID" = "yes",
|
||||
"No ID" = "none"
|
||||
)
|
||||
),
|
||||
shiny::radioButtons(
|
||||
inputId = "specify_factors",
|
||||
label = "Specify categorical variables?",
|
||||
|
Loading…
Reference in New Issue
Block a user