Deploying to gh-pages from @ agdamsbo/REDCapCAST@7d82eeebd4 🚀

articles/Database-creation.html

@@ -73,7 +73,9 @@
     
     
 <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
+<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
+<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span></code></pre></div>
 <div class="section level2">
 <h2 id="two-different-ways-to-create-a-data-base">Two different ways to create a data base<a class="anchor" aria-label="anchor" href="#two-different-ways-to-create-a-data-base"></a>
 </h2>

articles/REDCapCAST.html

@@ -73,7 +73,9 @@
     
     
 <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
-<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
+<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
+<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
+<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span></code></pre></div>
 <p>This vignette covers the basics to get you started with the two basic
 features of REDCapCAST:</p>
 <ul>

articles/Shiny-app.html

@@ -82,6 +82,8 @@ and launch the app as follows:</p>
 <code><a href="../reference/ds2dd_detailed.html">ds2dd_detailed()</a></code>.</p>
 <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
 <code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span>
+<span><span class="co">#&gt; Error in get(paste0(generic, ".", class), envir = get_method_env()) : </span></span>
+<span><span class="co">#&gt;   object 'type_sum.accel' not found</span></span>
 <span><span class="va">ds</span> <span class="op">&lt;-</span> <span class="fu"><a href="../reference/REDCap_split.html">REDCap_split</a></span><span class="op">(</span></span>
 <span>    records <span class="op">=</span> <span class="va">redcapcast_data</span>,</span>
 <span>    metadata <span class="op">=</span> <span class="va">redcapcast_meta</span>,</span>

news/index.html

@@ -38,7 +38,11 @@
     </div>
 
     <div class="section level2">
-<h2 class="pkg-version" data-toc-text="24.11.4" id="redcapcast-24114">REDCapCAST 24.11.4<a class="anchor" aria-label="anchor" href="#redcapcast-24114"></a></h2>
+<h2 class="pkg-version" data-toc-text="24.12.2" id="redcapcast-24122">REDCapCAST 24.12.2<a class="anchor" aria-label="anchor" href="#redcapcast-24122"></a></h2>
+<p>The newly introduced extension of <code><a href="https://forcats.tidyverse.org/reference/fct_drop.html" class="external-link">forcats::fct_drop()</a></code> has been corrected to work as intended as a method.</p>
+</div>
+    <div class="section level2">
+<h2 class="pkg-version" data-toc-text="24.12.1" id="redcapcast-24121">REDCapCAST 24.12.1<a class="anchor" aria-label="anchor" href="#redcapcast-24121"></a></h2><p class="text-muted">CRAN release: 2024-12-02</p>
 <p>This release attempts to solve problems hosting the shiny_cast app, while also implementing functions to preserve as much meta data as possible from the REDCap database when exporting data.</p>
 <p>The hosting on shinyapps.io has given a lot of trouble recently. Modified package structure a little around the <code><a href="../reference/shiny_cast.html">shiny_cast()</a></code>, to accommodate an alternative hosting approach with all package functions included in a script instead of requiring the package.</p>
 <ul><li><p>NEW: A new option to <code>raw_or_label</code> in <code>read_readcap_tables()</code> has been added: “both”. Get raw values with REDCap labels applied as labels. Use <code><a href="../reference/as_factor.html">as_factor()</a></code> to format factors with original labels and use the <code>gtsummary</code> package to easily get beautiful tables with original labels from REDCap. Use <code><a href="../reference/fct_drop.html">fct_drop()</a></code> to drop empty levels.</p></li>

pkgdown.yml

@@ -5,7 +5,7 @@ articles:
   Database-creation: Database-creation.html
   REDCapCAST: REDCapCAST.html
   Shiny-app: Shiny-app.html
-last_built: 2024-12-04T07:16Z
+last_built: 2024-12-19T20:23Z
 urls:
   reference: https://agdamsbo.github.io/REDCapCAST/reference
   article: https://agdamsbo.github.io/REDCapCAST/articles

reference/fct_drop.factor.html

@@ -0,0 +1,8 @@
+<html>
+  <head>
+    <meta http-equiv="refresh" content="0;URL=https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html" />
+    <meta name="robots" content="noindex">
+    <link rel="canonical" href="https://agdamsbo.github.io/REDCapCAST/reference/fct_drop.html">
+  </head>
+</html>
+

reference/fct_drop.html

@@ -1,7 +1,7 @@
 <!DOCTYPE html>
 <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><title>Drop unused levels preserving label data — fct_drop • REDCapCAST</title><!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="../favicon-16x16.png"><link rel="icon" type="image/png" sizes="32x32" href="../favicon-32x32.png"><link rel="apple-touch-icon" type="image/png" sizes="180x180" href="../apple-touch-icon.png"><link rel="apple-touch-icon" type="image/png" sizes="120x120" href="../apple-touch-icon-120x120.png"><link rel="apple-touch-icon" type="image/png" sizes="76x76" href="../apple-touch-icon-76x76.png"><link rel="apple-touch-icon" type="image/png" sizes="60x60" href="../apple-touch-icon-60x60.png"><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.3.1/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.3.1/bootstrap.bundle.min.js"></script><link href="../deps/font-awesome-6.5.2/css/all.min.css" rel="stylesheet"><link href="../deps/font-awesome-6.5.2/css/v4-shims.min.css" rel="stylesheet"><script src="../deps/headroom-0.11.0/headroom.min.js"></script><script src="../deps/headroom-0.11.0/jQuery.headroom.min.js"></script><script src="../deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js"></script><script src="../deps/clipboard.js-2.0.11/clipboard.min.js"></script><script src="../deps/search-1.0.0/autocomplete.jquery.min.js"></script><script src="../deps/search-1.0.0/fuse.min.js"></script><script src="../deps/search-1.0.0/mark.min.js"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="Drop unused levels preserving label data — fct_drop"><meta name="description" content="This extends [forcats::fct_drop()] to natively work across a data.frame and
-replace [base::droplevels()]."><meta property="og:description" content="This extends [forcats::fct_drop()] to natively work across a data.frame and
+replaces [base::droplevels()]."><meta property="og:description" content="This extends [forcats::fct_drop()] to natively work across a data.frame and
-replace [base::droplevels()]."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
+replaces [base::droplevels()]."><meta property="og:image" content="https://agdamsbo.github.io/REDCapCAST/logo.png"></head><body>
     <a href="#main" class="visually-hidden-focusable">Skip to contents</a>
 
 
@@ -42,12 +42,18 @@ replace [base::droplevels()]."><meta property="og:image" content="https://agdams
 
     <div class="ref-description section level2">
     <p>This extends [forcats::fct_drop()] to natively work across a data.frame and
-replace [base::droplevels()].</p>
+replaces [base::droplevels()].</p>
     </div>
 
     <div class="section level2">
     <h2 id="ref-usage">Usage<a class="anchor" aria-label="anchor" href="#ref-usage"></a></h2>
-    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fct_drop.data.frame</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">fct_drop</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
+<span></span>
+<span><span class="co"># S3 method for class 'data.frame'</span></span>
+<span><span class="fu">fct_drop</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span>
+<span></span>
+<span><span class="co"># S3 method for class 'factor'</span></span>
+<span><span class="fu">fct_drop</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div class="section level2">
@@ -63,6 +69,63 @@ replace [base::droplevels()].</p>
 
 </dl></div>
 
+    <div class="section level2">
+    <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="numchar2fct.html">numchar2fct</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
+<span class="r-in"><span>  <span class="fu">fct_drop</span><span class="op">(</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># A tibble: 32 × 11</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>      mpg cyl    disp    hp  drat    wt  qsec vs    am    gear  carb </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>    <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;dbl&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span> <span style="color: #949494; font-style: italic;">&lt;fct&gt;</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 1</span>  21   6      160    110  3.9   2.62  16.5 0     1     4     4    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 2</span>  21   6      160    110  3.9   2.88  17.0 0     1     4     4    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 3</span>  22.8 4      108     93  3.85  2.32  18.6 1     1     4     1    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 4</span>  21.4 6      258    110  3.08  3.22  19.4 1     0     3     1    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 5</span>  18.7 8      360    175  3.15  3.44  17.0 0     0     3     2    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 6</span>  18.1 6      225    105  2.76  3.46  20.2 1     0     3     1    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 7</span>  14.3 8      360    245  3.21  3.57  15.8 0     0     3     4    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 8</span>  24.4 4      147.    62  3.69  3.19  20   1     0     4     2    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;"> 9</span>  22.8 4      141.    95  3.92  3.15  22.9 1     0     4     2    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #BCBCBC;">10</span>  19.2 6      168.   123  3.92  3.44  18.3 1     0     4     4    </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> <span style="color: #949494;"># ℹ 22 more rows</span></span>
+<span class="r-in"><span><span class="va">mtcars</span> <span class="op">|&gt;</span></span></span>
+<span class="r-in"><span>  <span class="fu"><a href="numchar2fct.html">numchar2fct</a></span><span class="op">(</span><span class="op">)</span> <span class="op">|&gt;</span></span></span>
+<span class="r-in"><span>  <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>vs <span class="op">=</span> <span class="fu">fct_drop</span><span class="op">(</span><span class="va">vs</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span>                      mpg cyl  disp  hp drat    wt  qsec vs am gear carb</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Mazda RX4           21.0   6 160.0 110 3.90 2.620 16.46  0  1    4    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Mazda RX4 Wag       21.0   6 160.0 110 3.90 2.875 17.02  0  1    4    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Datsun 710          22.8   4 108.0  93 3.85 2.320 18.61  1  1    4    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Hornet 4 Drive      21.4   6 258.0 110 3.08 3.215 19.44  1  0    3    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Hornet Sportabout   18.7   8 360.0 175 3.15 3.440 17.02  0  0    3    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Valiant             18.1   6 225.0 105 2.76 3.460 20.22  1  0    3    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Duster 360          14.3   8 360.0 245 3.21 3.570 15.84  0  0    3    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 240D           24.4   4 146.7  62 3.69 3.190 20.00  1  0    4    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 230            22.8   4 140.8  95 3.92 3.150 22.90  1  0    4    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 280            19.2   6 167.6 123 3.92 3.440 18.30  1  0    4    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 280C           17.8   6 167.6 123 3.92 3.440 18.90  1  0    4    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 450SE          16.4   8 275.8 180 3.07 4.070 17.40  0  0    3    3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 450SL          17.3   8 275.8 180 3.07 3.730 17.60  0  0    3    3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Merc 450SLC         15.2   8 275.8 180 3.07 3.780 18.00  0  0    3    3</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Cadillac Fleetwood  10.4   8 472.0 205 2.93 5.250 17.98  0  0    3    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Lincoln Continental 10.4   8 460.0 215 3.00 5.424 17.82  0  0    3    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Chrysler Imperial   14.7   8 440.0 230 3.23 5.345 17.42  0  0    3    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Fiat 128            32.4   4  78.7  66 4.08 2.200 19.47  1  1    4    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Honda Civic         30.4   4  75.7  52 4.93 1.615 18.52  1  1    4    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Toyota Corolla      33.9   4  71.1  65 4.22 1.835 19.90  1  1    4    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Toyota Corona       21.5   4 120.1  97 3.70 2.465 20.01  1  0    3    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Dodge Challenger    15.5   8 318.0 150 2.76 3.520 16.87  0  0    3    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> AMC Javelin         15.2   8 304.0 150 3.15 3.435 17.30  0  0    3    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Camaro Z28          13.3   8 350.0 245 3.73 3.840 15.41  0  0    3    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Pontiac Firebird    19.2   8 400.0 175 3.08 3.845 17.05  0  0    3    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Fiat X1-9           27.3   4  79.0  66 4.08 1.935 18.90  1  1    4    1</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Porsche 914-2       26.0   4 120.3  91 4.43 2.140 16.70  0  1    5    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Lotus Europa        30.4   4  95.1 113 3.77 1.513 16.90  1  1    5    2</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Ford Pantera L      15.8   8 351.0 264 4.22 3.170 14.50  0  1    5    4</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Ferrari Dino        19.7   6 145.0 175 3.62 2.770 15.50  0  1    5    6</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Maserati Bora       15.0   8 301.0 335 3.54 3.570 14.60  0  1    5    8</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Volvo 142E          21.4   4 121.0 109 4.11 2.780 18.60  1  1    4    2</span>
+</code></pre></div>
+    </div>
   </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2>
     </nav></aside></div>
 

reference/index.html

@@ -181,7 +181,7 @@
         <dd>Allows conversion of factor to numeric values preserving original levels</dd>
       </dl><dl><dt>
 
-          <code><a href="fct_drop.html">fct_drop.data.frame()</a></code>
+          <code><a href="fct_drop.html">fct_drop()</a></code>
 
         </dt>
         <dd>Drop unused levels preserving label data</dd>