andreas/REDCapCAST
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Andreas Gammelgaard Damsbo 2024-04-09 10:54:52 +02:00
parent 1bdbb0df94
commit 4cd484bd6b
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5 changed files with 61 additions and 30 deletions
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5
DESCRIPTION
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@ -1,6 +1,6 @@
Package: REDCapCAST
Title: REDCap Castellated Data Handling
Version: 24.3.1
Version: 24.4.1
Authors@R: c(
person("Andreas Gammelgaard", "Damsbo", email = "agdamsbo@clin.au.dk",
role = c("aut", "cre"),comment = c(ORCID = "0000-0002-7559-1154")),
@ -51,7 +51,8 @@ Imports:
stats,
shiny,
openxlsx2,
haven
haven,
readODS
Collate:
'utils.r'
'process_user_input.r'

6
R/utils.r
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@ -506,6 +506,7 @@ is_repeated_longitudinal <- function(data, generics = c(
#'
#' @examples
#' file_extension(list.files(here::here(""))[[2]])[[1]]
#' file_extension(c("file.cd..ks","file"))
file_extension <- function(filenames) {
sub(pattern = "^(.*\\.|[^.]+)(?=[^.]*)", replacement = "",
filenames,
@ -533,8 +534,11 @@ read_input <- function(file, consider.na = c("NA", '""', "")) {
df <- openxlsx2::read_xlsx(file = file, na.strings = consider.na)
} else if (ext == "dta") {
df <- haven::read_dta(file = file)
} else if (ext == "ods") {
df <- readODS::read_ods(file = file)
} else {
stop("Input file format has to be either '.csv', '.xls' or '.xlsx'")
stop("Input file format has to be on of:
'.csv', '.xls', '.xlsx', '.dta' or '.ods'")
}
},
error = function(e) {

2
app/rsconnect/shinyapps.io/agdamsbo/redcapcast.dcf
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@ -5,6 +5,6 @@ account: agdamsbo
server: shinyapps.io
hostUrl: https://api.shinyapps.io/v1
appId: 11351429
bundleId: 8311272
bundleId:
url: https://agdamsbo.shinyapps.io/redcapcast/
version: 1

1
man/file_extension.Rd
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@ -17,4 +17,5 @@ Helper to import files correctly
}
\examples{
file_extension(list.files(here::here(""))[[2]])[[1]]
file_extension(c("file.cd..ks","file"))
}

77
renv.lock
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@ -116,13 +116,14 @@
},
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"R",
"base64enc",
"cachem",
"fastmap",
"grDevices",
"htmltools",
"jquerylib",
@ -133,7 +134,7 @@
"rlang",
"sass"
],
"Hash": "c0d8599494bc7fb408cd206bbdd9cab0"
"Hash": "8644cc53f43828f19133548195d7e59e"
},
"cachem": {
"Package": "cachem",
@ -146,6 +147,18 @@
],
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},
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],
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},
"checkmate": {
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"Version": "2.3.1",
@ -252,17 +265,6 @@
],
"Hash": "fedd9d00c2944ff00a0e2696ccf048ec"
},
"ellipsis": {
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],
"Hash": "bb0eec2fe32e88d9e2836c2f73ea2077"
},
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"Version": "1.0.6",
@ -390,26 +392,25 @@
},
"htmltools": {
"Package": "htmltools",
"Version": "0.5.7",
"Version": "0.5.8",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
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"rlang",
"utils"
],
"Hash": "2d7b3857980e0e0d0a1fd6f11928ab0f"
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"Source": "Repository",
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"Repository": "CRAN",
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@ -418,7 +419,7 @@
"promises",
"utils"
],
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"Hash": "d55aa087c47a63ead0f6fc10f8fa1ee0"
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"httr": {
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@ -542,7 +543,7 @@
},
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"Version": "1.4",
"Version": "1.5",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
@ -555,7 +556,7 @@
"utils",
"zip"
],
"Hash": "9fa7cdc5fbdb1c8511fdde72a944db63"
"Hash": "60138955e79b56bf75a99f2b04918d48"
},
"pillar": {
"Package": "pillar",
@ -649,6 +650,24 @@
],
"Hash": "5e3c5dc0b071b21fa128676560dbe94d"
},
"readODS": {
"Package": "readODS",
"Version": "2.2.0",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
"R",
"cellranger",
"cpp11",
"readr",
"stringi",
"tibble",
"tools",
"vctrs",
"zip"
],
"Hash": "79c0f23a27909659c1a2d62048c15096"
},
"readr": {
"Package": "readr",
"Version": "2.1.5",
@ -672,6 +691,13 @@
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"Hash": "9de96463d2117f6ac49980577939dfb3"
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"Version": "2.0.0",
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"Repository": "CRAN",
"Hash": "cbff1b666c6fa6d21202f07e2318d4f1"
},
"renv": {
"Package": "renv",
"Version": "1.0.5",
@ -695,7 +721,7 @@
},
"sass": {
"Package": "sass",
"Version": "0.4.8",
"Version": "0.4.9",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
@ -705,11 +731,11 @@
"rappdirs",
"rlang"
],
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},
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"Version": "1.8.0",
"Version": "1.8.1.1",
"Source": "Repository",
"Repository": "CRAN",
"Requirements": [
@ -719,7 +745,6 @@
"cachem",
"commonmark",
"crayon",
"ellipsis",
"fastmap",
"fontawesome",
"glue",
@ -739,7 +764,7 @@
"withr",
"xtable"
],
"Hash": "3a1f41807d648a908e3c7f0334bf85e6"
"Hash": "54b26646816af9960a4c64d8ceec75d6"
},
"sodium": {
"Package": "sodium",