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12
DESCRIPTION
12
DESCRIPTION
@ -1,13 +1,13 @@
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Package: REDCapCAST
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Title: REDCap Castellated data handling
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Title: REDCap Castellated Data Handling
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Version: 23.4.1
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Authors@R: c(
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person("Andreas Gammelgaard", "Damsbo", email = "agdamsbo@clin.au.dk", role = c("aut", "cre"),
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comment = c(ORCID = "0000-0002-7559-1154")),
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person("Paul", "Egeler", email = "paul.egeler@spectrumhealth.org", role = "aut"))
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Description: This package is based on REDCapRITS by Paul Egeler and Spectrum Health.
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See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS).
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Handle the castellated dataset from REDCap projects with repeating
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Description: Based on REDCapRITS by Paul Egeler and Spectrum Health.
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See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
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Handles the castellated dataset from REDCap projects with repeating
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instruments. Split data into multiple tables. This will take raw output from
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a REDCap export and split it into a base table and child tables for each
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repeated instrument.
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@ -36,8 +36,8 @@ License: GPL (>= 3)
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Encoding: UTF-8
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LazyData: true
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RoxygenNote: 7.2.3
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URL: https://github.com/agdamsbo/REDCapRITS
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BugReports: https://github.com/agdamsbo/REDCapRITS/issues
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URL: https://github.com/agdamsbo/REDCapCAST
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BugReports: https://github.com/agdamsbo/REDCapCAST/issues
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Imports:
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dplyr,
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REDCapR,
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@ -1,4 +1,4 @@
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#' REDCap matedata from data base
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#' REDCap metadata from data base
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#'
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#' This metadata dataset from a REDCap database is for demonstrational purposes.
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#'
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@ -52,7 +52,7 @@
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<ul class="navbar-nav">
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<li class="nav-item">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
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<span class="fab fa fab fa-github fa-lg"></span>
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</a>
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@ -34,7 +34,7 @@
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
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<ul class="navbar-nav"><li class="nav-item">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
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<span class="fab fa fab fa-github fa-lg"></span>
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</a>
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@ -47,7 +47,7 @@
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<div class="row">
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<main id="main" class="col-md-9"><div class="page-header">
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<img src="" class="logo" alt=""><h1>GNU General Public License</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
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</div>
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<div id="gnu-general-public-license" class="section level1">
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@ -54,7 +54,7 @@
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<ul class="navbar-nav">
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<li class="nav-item">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
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<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
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<span class="fab fa fab fa-github fa-lg"></span>
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</a>
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@ -74,14 +74,14 @@
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<img src="" class="logo" alt=""><h1>Introduction</h1>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
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<div class="d-none name"><code>Introduction.Rmd</code></div>
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</div>
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<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapRITS" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
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<p>This vignette covers the included functions and basic
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functionality.</p>
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<p>A dataset and a meta data file are provided with the package for
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@ -91,12 +91,12 @@ demonstration of the functions.</p>
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</h2>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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<style>html {
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font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
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}
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#zmtndsgjuu .gt_table {
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#aebcaptaos .gt_table {
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display: table;
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margin-left: auto;
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@ -121,7 +121,7 @@ demonstration of the functions.</p>
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border-left-color: #D3D3D3;
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}
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#zmtndsgjuu .gt_heading {
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@ -133,12 +133,12 @@ demonstration of the functions.</p>
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}
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#zmtndsgjuu .gt_caption {
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@ -150,7 +150,7 @@ demonstration of the functions.</p>
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@ -162,13 +162,13 @@ demonstration of the functions.</p>
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@ -183,7 +183,7 @@ demonstration of the functions.</p>
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border-right-color: #D3D3D3;
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@ -203,7 +203,7 @@ demonstration of the functions.</p>
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@ -215,15 +215,15 @@ demonstration of the functions.</p>
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padding-right: 4px;
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}
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#zmtndsgjuu .gt_column_spanner_outer:first-child {
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border-bottom-color: #D3D3D3;
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@ -235,7 +235,7 @@ demonstration of the functions.</p>
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width: 100%;
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}
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#zmtndsgjuu .gt_group_heading {
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padding-left: 5px;
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@ -261,7 +261,7 @@ demonstration of the functions.</p>
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text-align: left;
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}
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#zmtndsgjuu .gt_empty_group_heading {
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padding: 0.5px;
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background-color: #FFFFFF;
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@ -276,15 +276,15 @@ demonstration of the functions.</p>
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vertical-align: middle;
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}
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#zmtndsgjuu .gt_from_md > :first-child {
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@ -303,7 +303,7 @@ demonstration of the functions.</p>
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overflow-x: hidden;
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#zmtndsgjuu .gt_stub {
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#aebcaptaos .gt_stub {
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font-size: 100%;
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@ -316,7 +316,7 @@ demonstration of the functions.</p>
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padding-right: 5px;
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}
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#zmtndsgjuu .gt_stub_row_group {
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@ -330,11 +330,11 @@ demonstration of the functions.</p>
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}
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#zmtndsgjuu .gt_row_group_first td {
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border-bottom-color: #D3D3D3;
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}
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#zmtndsgjuu .gt_grand_summary_row {
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padding-right: 5px;
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}
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#zmtndsgjuu .gt_first_grand_summary_row {
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border-bottom-color: #D3D3D3;
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}
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#zmtndsgjuu .gt_footnotes {
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border-right-color: #D3D3D3;
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}
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margin: 0px;
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font-size: 90%;
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padding-left: 4px;
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padding-right: 5px;
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border-right-color: #D3D3D3;
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}
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||||
text-indent: 15px;
|
||||
}
|
||||
|
||||
#zmtndsgjuu .gt_indent_4 {
|
||||
#aebcaptaos .gt_indent_4 {
|
||||
text-indent: 20px;
|
||||
}
|
||||
|
||||
#zmtndsgjuu .gt_indent_5 {
|
||||
#aebcaptaos .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
</style>
|
||||
@ -965,12 +965,12 @@ demonstration of the functions.</p>
|
||||
</div>
|
||||
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|></span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
|
||||
<div id="jvvhyocuyv" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
<div id="hbcvqyzeai" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
|
||||
<style>html {
|
||||
font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, Oxygen, Ubuntu, Cantarell, 'Helvetica Neue', 'Fira Sans', 'Droid Sans', Arial, sans-serif;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_table {
|
||||
#hbcvqyzeai .gt_table {
|
||||
display: table;
|
||||
border-collapse: collapse;
|
||||
margin-left: auto;
|
||||
@ -995,7 +995,7 @@ demonstration of the functions.</p>
|
||||
border-left-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_heading {
|
||||
#hbcvqyzeai .gt_heading {
|
||||
background-color: #FFFFFF;
|
||||
text-align: center;
|
||||
border-bottom-color: #FFFFFF;
|
||||
@ -1007,12 +1007,12 @@ demonstration of the functions.</p>
|
||||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_caption {
|
||||
#hbcvqyzeai .gt_caption {
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_title {
|
||||
#hbcvqyzeai .gt_title {
|
||||
color: #333333;
|
||||
font-size: 125%;
|
||||
font-weight: initial;
|
||||
@ -1024,7 +1024,7 @@ demonstration of the functions.</p>
|
||||
border-bottom-width: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_subtitle {
|
||||
#hbcvqyzeai .gt_subtitle {
|
||||
color: #333333;
|
||||
font-size: 85%;
|
||||
font-weight: initial;
|
||||
@ -1036,13 +1036,13 @@ demonstration of the functions.</p>
|
||||
border-top-width: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_bottom_border {
|
||||
#hbcvqyzeai .gt_bottom_border {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_col_headings {
|
||||
#hbcvqyzeai .gt_col_headings {
|
||||
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|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
@ -1057,7 +1057,7 @@ demonstration of the functions.</p>
|
||||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_col_heading {
|
||||
#hbcvqyzeai .gt_col_heading {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
@ -1077,7 +1077,7 @@ demonstration of the functions.</p>
|
||||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_column_spanner_outer {
|
||||
#hbcvqyzeai .gt_column_spanner_outer {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
@ -1089,15 +1089,15 @@ demonstration of the functions.</p>
|
||||
padding-right: 4px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_column_spanner_outer:first-child {
|
||||
#hbcvqyzeai .gt_column_spanner_outer:first-child {
|
||||
padding-left: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_column_spanner_outer:last-child {
|
||||
#hbcvqyzeai .gt_column_spanner_outer:last-child {
|
||||
padding-right: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_column_spanner {
|
||||
#hbcvqyzeai .gt_column_spanner {
|
||||
border-bottom-style: solid;
|
||||
border-bottom-width: 2px;
|
||||
border-bottom-color: #D3D3D3;
|
||||
@ -1109,7 +1109,7 @@ demonstration of the functions.</p>
|
||||
width: 100%;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_group_heading {
|
||||
#hbcvqyzeai .gt_group_heading {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
@ -1135,7 +1135,7 @@ demonstration of the functions.</p>
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_empty_group_heading {
|
||||
#hbcvqyzeai .gt_empty_group_heading {
|
||||
padding: 0.5px;
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
@ -1150,15 +1150,15 @@ demonstration of the functions.</p>
|
||||
vertical-align: middle;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_from_md > :first-child {
|
||||
#hbcvqyzeai .gt_from_md > :first-child {
|
||||
margin-top: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_from_md > :last-child {
|
||||
#hbcvqyzeai .gt_from_md > :last-child {
|
||||
margin-bottom: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_row {
|
||||
#hbcvqyzeai .gt_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
@ -1177,7 +1177,7 @@ demonstration of the functions.</p>
|
||||
overflow-x: hidden;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_stub {
|
||||
#hbcvqyzeai .gt_stub {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
@ -1190,7 +1190,7 @@ demonstration of the functions.</p>
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_stub_row_group {
|
||||
#hbcvqyzeai .gt_stub_row_group {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
font-size: 100%;
|
||||
@ -1204,11 +1204,11 @@ demonstration of the functions.</p>
|
||||
vertical-align: top;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_row_group_first td {
|
||||
#hbcvqyzeai .gt_row_group_first td {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_summary_row {
|
||||
#hbcvqyzeai .gt_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
@ -1218,16 +1218,16 @@ demonstration of the functions.</p>
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_first_summary_row {
|
||||
#hbcvqyzeai .gt_first_summary_row {
|
||||
border-top-style: solid;
|
||||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_first_summary_row.thick {
|
||||
#hbcvqyzeai .gt_first_summary_row.thick {
|
||||
border-top-width: 2px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_last_summary_row {
|
||||
#hbcvqyzeai .gt_last_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
@ -1237,7 +1237,7 @@ demonstration of the functions.</p>
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_grand_summary_row {
|
||||
#hbcvqyzeai .gt_grand_summary_row {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
text-transform: inherit;
|
||||
@ -1247,7 +1247,7 @@ demonstration of the functions.</p>
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_first_grand_summary_row {
|
||||
#hbcvqyzeai .gt_first_grand_summary_row {
|
||||
padding-top: 8px;
|
||||
padding-bottom: 8px;
|
||||
padding-left: 5px;
|
||||
@ -1257,11 +1257,11 @@ demonstration of the functions.</p>
|
||||
border-top-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_striped {
|
||||
#hbcvqyzeai .gt_striped {
|
||||
background-color: rgba(128, 128, 128, 0.05);
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_table_body {
|
||||
#hbcvqyzeai .gt_table_body {
|
||||
border-top-style: solid;
|
||||
border-top-width: 2px;
|
||||
border-top-color: #D3D3D3;
|
||||
@ -1270,7 +1270,7 @@ demonstration of the functions.</p>
|
||||
border-bottom-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_footnotes {
|
||||
#hbcvqyzeai .gt_footnotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
@ -1284,7 +1284,7 @@ demonstration of the functions.</p>
|
||||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_footnote {
|
||||
#hbcvqyzeai .gt_footnote {
|
||||
margin: 0px;
|
||||
font-size: 90%;
|
||||
padding-left: 4px;
|
||||
@ -1293,7 +1293,7 @@ demonstration of the functions.</p>
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_sourcenotes {
|
||||
#hbcvqyzeai .gt_sourcenotes {
|
||||
color: #333333;
|
||||
background-color: #FFFFFF;
|
||||
border-bottom-style: none;
|
||||
@ -1307,7 +1307,7 @@ demonstration of the functions.</p>
|
||||
border-right-color: #D3D3D3;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_sourcenote {
|
||||
#hbcvqyzeai .gt_sourcenote {
|
||||
font-size: 90%;
|
||||
padding-top: 4px;
|
||||
padding-bottom: 4px;
|
||||
@ -1315,64 +1315,64 @@ demonstration of the functions.</p>
|
||||
padding-right: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_left {
|
||||
#hbcvqyzeai .gt_left {
|
||||
text-align: left;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_center {
|
||||
#hbcvqyzeai .gt_center {
|
||||
text-align: center;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_right {
|
||||
#hbcvqyzeai .gt_right {
|
||||
text-align: right;
|
||||
font-variant-numeric: tabular-nums;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_font_normal {
|
||||
#hbcvqyzeai .gt_font_normal {
|
||||
font-weight: normal;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_font_bold {
|
||||
#hbcvqyzeai .gt_font_bold {
|
||||
font-weight: bold;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_font_italic {
|
||||
#hbcvqyzeai .gt_font_italic {
|
||||
font-style: italic;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_super {
|
||||
#hbcvqyzeai .gt_super {
|
||||
font-size: 65%;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_footnote_marks {
|
||||
#hbcvqyzeai .gt_footnote_marks {
|
||||
font-style: italic;
|
||||
font-weight: normal;
|
||||
font-size: 75%;
|
||||
vertical-align: 0.4em;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_asterisk {
|
||||
#hbcvqyzeai .gt_asterisk {
|
||||
font-size: 100%;
|
||||
vertical-align: 0;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_indent_1 {
|
||||
#hbcvqyzeai .gt_indent_1 {
|
||||
text-indent: 5px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_indent_2 {
|
||||
#hbcvqyzeai .gt_indent_2 {
|
||||
text-indent: 10px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_indent_3 {
|
||||
#hbcvqyzeai .gt_indent_3 {
|
||||
text-indent: 15px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_indent_4 {
|
||||
#hbcvqyzeai .gt_indent_4 {
|
||||
text-indent: 20px;
|
||||
}
|
||||
|
||||
#jvvhyocuyv .gt_indent_5 {
|
||||
#hbcvqyzeai .gt_indent_5 {
|
||||
text-indent: 25px;
|
||||
}
|
||||
</style>
|
||||
@ -1802,7 +1802,7 @@ Note: as opposed to the build in datediff() this handles counting years as integ
|
||||
<p>This function wraps all the above demonstrated function to get the
|
||||
dataset, the metadata, apply the <code>REDCap_split</code>function and
|
||||
then a bit of cleaning.</p>
|
||||
<p>The function works verysimilarly as the
|
||||
<p>The function works very similar to the
|
||||
<code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code>.</p>
|
||||
<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
|
||||
<code class="sourceCode R"><span><span class="co"># read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")</span></span>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -64,18 +64,18 @@
|
||||
|
||||
<div class="section level2 citation">
|
||||
<h2 id="citation">Citation</h2>
|
||||
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
|
||||
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
|
||||
|
||||
<p>Damsbo A, Egeler P (2023).
|
||||
<em>REDCapCAST: REDCap Castellated data handling</em>.
|
||||
R package version 23.4.1, <a href="https://github.com/agdamsbo/REDCapRITS" class="external-link">https://github.com/agdamsbo/REDCapRITS</a>.
|
||||
<em>REDCapCAST: REDCap Castellated Data Handling</em>.
|
||||
R package version 23.4.1, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
|
||||
</p>
|
||||
<pre>@Manual{,
|
||||
title = {REDCapCAST: REDCap Castellated data handling},
|
||||
title = {REDCapCAST: REDCap Castellated Data Handling},
|
||||
author = {Andreas Gammelgaard Damsbo and Paul Egeler},
|
||||
year = {2023},
|
||||
note = {R package version 23.4.1},
|
||||
url = {https://github.com/agdamsbo/REDCapRITS},
|
||||
url = {https://github.com/agdamsbo/REDCapCAST},
|
||||
}</pre>
|
||||
</div>
|
||||
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>
|
||||
|
||||
@ -5,9 +5,9 @@
|
||||
<meta charset="utf-8">
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||||
<meta name="description" content="This package is based on REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS).
|
||||
Handle the castellated dataset from REDCap projects with repeating
|
||||
<meta name="description" content="Based on REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
|
||||
Handles the castellated dataset from REDCap projects with repeating
|
||||
instruments. Split data into multiple tables. This will take raw output from
|
||||
a REDCap export and split it into a base table and child tables for each
|
||||
repeated instrument.
|
||||
@ -18,15 +18,15 @@
|
||||
procedures for seamless data downloads to common statistical packages; and
|
||||
4) procedures for data integration and interoperability with external sources
|
||||
(<doi:10.1016/j.jbi.2008.08.010>; <doi:10.1016/j.jbi.2019.103208>).">
|
||||
<title>REDCap Castellated data handling • REDCapCAST</title>
|
||||
<title>REDCap Castellated Data Handling • REDCapCAST</title>
|
||||
<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
|
||||
<link href="deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet">
|
||||
<script src="deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
|
||||
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
|
||||
<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="REDCap Castellated data handling">
|
||||
<meta property="og:description" content="This package is based on REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS).
|
||||
Handle the castellated dataset from REDCap projects with repeating
|
||||
<!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="pkgdown.js"></script><meta property="og:title" content="REDCap Castellated Data Handling">
|
||||
<meta property="og:description" content="Based on REDCapRITS by Paul Egeler and Spectrum Health.
|
||||
See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
|
||||
Handles the castellated dataset from REDCap projects with repeating
|
||||
instruments. Split data into multiple tables. This will take raw output from
|
||||
a REDCap export and split it into a base table and child tables for each
|
||||
repeated instrument.
|
||||
@ -78,7 +78,7 @@
|
||||
|
||||
<ul class="navbar-nav">
|
||||
<li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -119,8 +119,8 @@
|
||||
</main><aside class="col-md-3"><div class="links">
|
||||
<h2 data-toc-skip>Links</h2>
|
||||
<ul class="list-unstyled">
|
||||
<li><a href="https://github.com/agdamsbo/REDCapRITS/" class="external-link">Browse source code</a></li>
|
||||
<li><a href="https://github.com/agdamsbo/REDCapRITS/issues" class="external-link">Report a bug</a></li>
|
||||
<li><a href="https://github.com/agdamsbo/REDCapCAST/" class="external-link">Browse source code</a></li>
|
||||
<li><a href="https://github.com/agdamsbo/REDCapCAST/issues" class="external-link">Report a bug</a></li>
|
||||
</ul>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -47,7 +47,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Changelog</h1>
|
||||
<small>Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
<small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
|
||||
</div>
|
||||
|
||||
<div class="section level2">
|
||||
|
||||
@ -3,5 +3,5 @@ pkgdown: 2.0.7
|
||||
pkgdown_sha: ~
|
||||
articles:
|
||||
Introduction: Introduction.html
|
||||
last_built: 2023-04-13T10:14Z
|
||||
last_built: 2023-04-14T07:46Z
|
||||
|
||||
|
||||
@ -38,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -51,7 +51,7 @@ is used to determine which fields should be included in each resultant table."><
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
|
||||
<div class="d-none name"><code>REDCap_split.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -47,7 +47,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>focused_metadata</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>focused_metadata.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -94,7 +94,7 @@
|
||||
|
||||
<code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
|
||||
</dt>
|
||||
<dd>REDCap matedata from data base</dd>
|
||||
<dd>REDCap metadata from data base</dd>
|
||||
</dl><dl><dt>
|
||||
|
||||
<code><a href="sanitize_split.html">sanitize_split()</a></code>
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -47,7 +47,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Match fields to forms</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>match_fields_to_form.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -40,7 +40,7 @@ Works with longitudinal projects with repeating instruments."><!-- mathjax --><s
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -53,7 +53,7 @@ Works with longitudinal projects with repeating instruments."><!-- mathjax --><s
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Download REDCap data</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
|
||||
<div class="d-none name"><code>read_redcap_tables.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ Handles longitudinal projects, but not yet repeated instruments."><!-- mathjax -
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -49,7 +49,7 @@ Handles longitudinal projects, but not yet repeated instruments."><!-- mathjax -
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Redcap Wider</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
|
||||
<div class="d-none name"><code>redcap_wider.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -36,7 +36,7 @@ Contains only synthetic data."><!-- mathjax --><script src="https://cdnjs.cloudf
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -49,7 +49,7 @@ Contains only synthetic data."><!-- mathjax --><script src="https://cdnjs.cloudf
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Data set for demonstration</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
|
||||
<div class="d-none name"><code>redcapcast_data.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -1,5 +1,5 @@
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><title>REDCap matedata from data base — redcapcast_meta • REDCapCAST</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap matedata from data base — redcapcast_meta"><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><title>REDCap metadata from data base — redcapcast_meta • REDCapCAST</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap metadata from data base — redcapcast_meta"><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]--></head><body>
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -46,8 +46,8 @@
|
||||
</nav><div class="container template-reference-topic">
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>REDCap matedata from data base</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
|
||||
<img src="" class="logo" alt=""><h1>REDCap metadata from data base</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
|
||||
<div class="d-none name"><code>redcapcast_meta.Rd</code></div>
|
||||
</div>
|
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|
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|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -47,7 +47,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Sanitize list of data frames</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>sanitize_split.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
@ -34,7 +34,7 @@
|
||||
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
|
||||
|
||||
<ul class="navbar-nav"><li class="nav-item">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github">
|
||||
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
|
||||
<span class="fab fa fab fa-github fa-lg"></span>
|
||||
|
||||
</a>
|
||||
@ -47,7 +47,7 @@
|
||||
<div class="row">
|
||||
<main id="main" class="col-md-9"><div class="page-header">
|
||||
<img src="" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
|
||||
<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
|
||||
</div>
|
||||
|
||||
|
||||
File diff suppressed because one or more lines are too long
@ -1,3 +1,4 @@
|
||||
Assesment
|
||||
CMD
|
||||
Codecov
|
||||
DataDictionary
|
||||
@ -12,14 +13,14 @@ REDCapR
|
||||
REDCapRITS
|
||||
SpectrumHealthResearch
|
||||
api
|
||||
demonstrational
|
||||
descirption
|
||||
desireable
|
||||
doi
|
||||
dplyr
|
||||
github
|
||||
https
|
||||
immprovements
|
||||
jbi
|
||||
mRS
|
||||
matadata
|
||||
md
|
||||
nad
|
||||
@ -27,3 +28,44 @@ og
|
||||
thorugh
|
||||
tidyverse
|
||||
uri
|
||||
agdamsbo
|
||||
Andreas
|
||||
au
|
||||
aut
|
||||
BugReports
|
||||
clin
|
||||
covr
|
||||
cre
|
||||
Damsbo
|
||||
dk
|
||||
doi
|
||||
dplyr
|
||||
egeler
|
||||
Egeler
|
||||
Gammelgaard
|
||||
github
|
||||
Hmisc
|
||||
https
|
||||
httr
|
||||
jbi
|
||||
jsonlite
|
||||
keyring
|
||||
knitr
|
||||
LazyData
|
||||
ORCID
|
||||
paul
|
||||
RCurl
|
||||
readr
|
||||
REDCap,49
|
||||
redcapcast
|
||||
REDCapCAST
|
||||
REDCapR
|
||||
REDCapRITS
|
||||
rmarkdown
|
||||
RoxygenNote
|
||||
spectrumhealth
|
||||
SpectrumHealthResearch
|
||||
testthat
|
||||
tidyr
|
||||
tidyselect
|
||||
VignetteBuilder
|
||||
|
||||
@ -3,7 +3,7 @@
|
||||
\docType{data}
|
||||
\name{redcapcast_meta}
|
||||
\alias{redcapcast_meta}
|
||||
\title{REDCap matedata from data base}
|
||||
\title{REDCap metadata from data base}
|
||||
\format{
|
||||
A data frame with 22 variables:
|
||||
\describe{
|
||||
|
||||
@ -51,7 +51,7 @@ str(list)
|
||||
|
||||
This function wraps all the above demonstrated function to get the dataset, the metadata, apply the `REDCap_split`function and then a bit of cleaning.
|
||||
|
||||
The function works verysimilarly as the `REDCapR::redcap_read()`.
|
||||
The function works very similar to the `REDCapR::redcap_read()`.
|
||||
|
||||
```{r eval=FALSE}
|
||||
# read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")
|
||||
|
||||
Loading…
Reference in New Issue
Block a user