still cran in sight

This commit is contained in:
AG Damsbo 2023-04-14 09:46:55 +02:00
parent bd3cec001a
commit 4847094f2c
24 changed files with 198 additions and 156 deletions

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@ -1,13 +1,13 @@
Package: REDCapCAST Package: REDCapCAST
Title: REDCap Castellated data handling Title: REDCap Castellated Data Handling
Version: 23.4.1 Version: 23.4.1
Authors@R: c( Authors@R: c(
person("Andreas Gammelgaard", "Damsbo", email = "agdamsbo@clin.au.dk", role = c("aut", "cre"), person("Andreas Gammelgaard", "Damsbo", email = "agdamsbo@clin.au.dk", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-7559-1154")), comment = c(ORCID = "0000-0002-7559-1154")),
person("Paul", "Egeler", email = "paul.egeler@spectrumhealth.org", role = "aut")) person("Paul", "Egeler", email = "paul.egeler@spectrumhealth.org", role = "aut"))
Description: This package is based on REDCapRITS by Paul Egeler and Spectrum Health. Description: Based on REDCapRITS by Paul Egeler and Spectrum Health.
See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS). See <https://github.com/SpectrumHealthResearch/REDCapRITS>.
Handle the castellated dataset from REDCap projects with repeating Handles the castellated dataset from REDCap projects with repeating
instruments. Split data into multiple tables. This will take raw output from instruments. Split data into multiple tables. This will take raw output from
a REDCap export and split it into a base table and child tables for each a REDCap export and split it into a base table and child tables for each
repeated instrument. repeated instrument.
@ -36,8 +36,8 @@ License: GPL (>= 3)
Encoding: UTF-8 Encoding: UTF-8
LazyData: true LazyData: true
RoxygenNote: 7.2.3 RoxygenNote: 7.2.3
URL: https://github.com/agdamsbo/REDCapRITS URL: https://github.com/agdamsbo/REDCapCAST
BugReports: https://github.com/agdamsbo/REDCapRITS/issues BugReports: https://github.com/agdamsbo/REDCapCAST/issues
Imports: Imports:
dplyr, dplyr,
REDCapR, REDCapR,

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@ -1,4 +1,4 @@
#' REDCap matedata from data base #' REDCap metadata from data base
#' #'
#' This metadata dataset from a REDCap database is for demonstrational purposes. #' This metadata dataset from a REDCap database is for demonstrational purposes.
#' #'

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@ -52,7 +52,7 @@
<ul class="navbar-nav"> <ul class="navbar-nav">
<li class="nav-item"> <li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>

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@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -47,7 +47,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>GNU General Public License</h1> <img src="" class="logo" alt=""><h1>GNU General Public License</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/LICENSE.md" class="external-link"><code>LICENSE.md</code></a></small>
</div> </div>
<div id="gnu-general-public-license" class="section level1"> <div id="gnu-general-public-license" class="section level1">

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@ -54,7 +54,7 @@
<ul class="navbar-nav"> <ul class="navbar-nav">
<li class="nav-item"> <li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -74,14 +74,14 @@
<img src="" class="logo" alt=""><h1>Introduction</h1> <img src="" class="logo" alt=""><h1>Introduction</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/vignettes/Introduction.Rmd" class="external-link"><code>vignettes/Introduction.Rmd</code></a></small>
<div class="d-none name"><code>Introduction.Rmd</code></div> <div class="d-none name"><code>Introduction.Rmd</code></div>
</div> </div>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapRITS" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">REDCapCAST</a></span><span class="op">)</span></span></code></pre></div>
<p>This vignette covers the included functions and basic <p>This vignette covers the included functions and basic
functionality.</p> functionality.</p>
<p>A dataset and a meta data file are provided with the package for <p>A dataset and a meta data file are provided with the package for
@ -91,12 +91,12 @@ demonstration of the functions.</p>
</h2> </h2>
<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_data</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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</div> </div>
<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div> <code class="sourceCode R"><span><span class="va">redcapcast_meta</span> <span class="op">|&gt;</span> <span class="fu">gt</span><span class="fu">::</span><span class="fu"><a href="https://gt.rstudio.com/reference/gt.html" class="external-link">gt</a></span><span class="op">(</span><span class="op">)</span></span></code></pre></div>
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border-top-style: solid; border-top-style: solid;
border-top-width: 2px; border-top-width: 2px;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
@ -1057,7 +1057,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#jvvhyocuyv .gt_col_heading { #hbcvqyzeai .gt_col_heading {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -1077,7 +1077,7 @@ demonstration of the functions.</p>
overflow-x: hidden; overflow-x: hidden;
} }
#jvvhyocuyv .gt_column_spanner_outer { #hbcvqyzeai .gt_column_spanner_outer {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -1089,15 +1089,15 @@ demonstration of the functions.</p>
padding-right: 4px; padding-right: 4px;
} }
#jvvhyocuyv .gt_column_spanner_outer:first-child { #hbcvqyzeai .gt_column_spanner_outer:first-child {
padding-left: 0; padding-left: 0;
} }
#jvvhyocuyv .gt_column_spanner_outer:last-child { #hbcvqyzeai .gt_column_spanner_outer:last-child {
padding-right: 0; padding-right: 0;
} }
#jvvhyocuyv .gt_column_spanner { #hbcvqyzeai .gt_column_spanner {
border-bottom-style: solid; border-bottom-style: solid;
border-bottom-width: 2px; border-bottom-width: 2px;
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
@ -1109,7 +1109,7 @@ demonstration of the functions.</p>
width: 100%; width: 100%;
} }
#jvvhyocuyv .gt_group_heading { #hbcvqyzeai .gt_group_heading {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -1135,7 +1135,7 @@ demonstration of the functions.</p>
text-align: left; text-align: left;
} }
#jvvhyocuyv .gt_empty_group_heading { #hbcvqyzeai .gt_empty_group_heading {
padding: 0.5px; padding: 0.5px;
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
@ -1150,15 +1150,15 @@ demonstration of the functions.</p>
vertical-align: middle; vertical-align: middle;
} }
#jvvhyocuyv .gt_from_md > :first-child { #hbcvqyzeai .gt_from_md > :first-child {
margin-top: 0; margin-top: 0;
} }
#jvvhyocuyv .gt_from_md > :last-child { #hbcvqyzeai .gt_from_md > :last-child {
margin-bottom: 0; margin-bottom: 0;
} }
#jvvhyocuyv .gt_row { #hbcvqyzeai .gt_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -1177,7 +1177,7 @@ demonstration of the functions.</p>
overflow-x: hidden; overflow-x: hidden;
} }
#jvvhyocuyv .gt_stub { #hbcvqyzeai .gt_stub {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -1190,7 +1190,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#jvvhyocuyv .gt_stub_row_group { #hbcvqyzeai .gt_stub_row_group {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
font-size: 100%; font-size: 100%;
@ -1204,11 +1204,11 @@ demonstration of the functions.</p>
vertical-align: top; vertical-align: top;
} }
#jvvhyocuyv .gt_row_group_first td { #hbcvqyzeai .gt_row_group_first td {
border-top-width: 2px; border-top-width: 2px;
} }
#jvvhyocuyv .gt_summary_row { #hbcvqyzeai .gt_summary_row {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
text-transform: inherit; text-transform: inherit;
@ -1218,16 +1218,16 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#jvvhyocuyv .gt_first_summary_row { #hbcvqyzeai .gt_first_summary_row {
border-top-style: solid; border-top-style: solid;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
} }
#jvvhyocuyv .gt_first_summary_row.thick { #hbcvqyzeai .gt_first_summary_row.thick {
border-top-width: 2px; border-top-width: 2px;
} }
#jvvhyocuyv .gt_last_summary_row { #hbcvqyzeai .gt_last_summary_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -1237,7 +1237,7 @@ demonstration of the functions.</p>
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#jvvhyocuyv .gt_grand_summary_row { #hbcvqyzeai .gt_grand_summary_row {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
text-transform: inherit; text-transform: inherit;
@ -1247,7 +1247,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#jvvhyocuyv .gt_first_grand_summary_row { #hbcvqyzeai .gt_first_grand_summary_row {
padding-top: 8px; padding-top: 8px;
padding-bottom: 8px; padding-bottom: 8px;
padding-left: 5px; padding-left: 5px;
@ -1257,11 +1257,11 @@ demonstration of the functions.</p>
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
} }
#jvvhyocuyv .gt_striped { #hbcvqyzeai .gt_striped {
background-color: rgba(128, 128, 128, 0.05); background-color: rgba(128, 128, 128, 0.05);
} }
#jvvhyocuyv .gt_table_body { #hbcvqyzeai .gt_table_body {
border-top-style: solid; border-top-style: solid;
border-top-width: 2px; border-top-width: 2px;
border-top-color: #D3D3D3; border-top-color: #D3D3D3;
@ -1270,7 +1270,7 @@ demonstration of the functions.</p>
border-bottom-color: #D3D3D3; border-bottom-color: #D3D3D3;
} }
#jvvhyocuyv .gt_footnotes { #hbcvqyzeai .gt_footnotes {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
border-bottom-style: none; border-bottom-style: none;
@ -1284,7 +1284,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#jvvhyocuyv .gt_footnote { #hbcvqyzeai .gt_footnote {
margin: 0px; margin: 0px;
font-size: 90%; font-size: 90%;
padding-left: 4px; padding-left: 4px;
@ -1293,7 +1293,7 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#jvvhyocuyv .gt_sourcenotes { #hbcvqyzeai .gt_sourcenotes {
color: #333333; color: #333333;
background-color: #FFFFFF; background-color: #FFFFFF;
border-bottom-style: none; border-bottom-style: none;
@ -1307,7 +1307,7 @@ demonstration of the functions.</p>
border-right-color: #D3D3D3; border-right-color: #D3D3D3;
} }
#jvvhyocuyv .gt_sourcenote { #hbcvqyzeai .gt_sourcenote {
font-size: 90%; font-size: 90%;
padding-top: 4px; padding-top: 4px;
padding-bottom: 4px; padding-bottom: 4px;
@ -1315,64 +1315,64 @@ demonstration of the functions.</p>
padding-right: 5px; padding-right: 5px;
} }
#jvvhyocuyv .gt_left { #hbcvqyzeai .gt_left {
text-align: left; text-align: left;
} }
#jvvhyocuyv .gt_center { #hbcvqyzeai .gt_center {
text-align: center; text-align: center;
} }
#jvvhyocuyv .gt_right { #hbcvqyzeai .gt_right {
text-align: right; text-align: right;
font-variant-numeric: tabular-nums; font-variant-numeric: tabular-nums;
} }
#jvvhyocuyv .gt_font_normal { #hbcvqyzeai .gt_font_normal {
font-weight: normal; font-weight: normal;
} }
#jvvhyocuyv .gt_font_bold { #hbcvqyzeai .gt_font_bold {
font-weight: bold; font-weight: bold;
} }
#jvvhyocuyv .gt_font_italic { #hbcvqyzeai .gt_font_italic {
font-style: italic; font-style: italic;
} }
#jvvhyocuyv .gt_super { #hbcvqyzeai .gt_super {
font-size: 65%; font-size: 65%;
} }
#jvvhyocuyv .gt_footnote_marks { #hbcvqyzeai .gt_footnote_marks {
font-style: italic; font-style: italic;
font-weight: normal; font-weight: normal;
font-size: 75%; font-size: 75%;
vertical-align: 0.4em; vertical-align: 0.4em;
} }
#jvvhyocuyv .gt_asterisk { #hbcvqyzeai .gt_asterisk {
font-size: 100%; font-size: 100%;
vertical-align: 0; vertical-align: 0;
} }
#jvvhyocuyv .gt_indent_1 { #hbcvqyzeai .gt_indent_1 {
text-indent: 5px; text-indent: 5px;
} }
#jvvhyocuyv .gt_indent_2 { #hbcvqyzeai .gt_indent_2 {
text-indent: 10px; text-indent: 10px;
} }
#jvvhyocuyv .gt_indent_3 { #hbcvqyzeai .gt_indent_3 {
text-indent: 15px; text-indent: 15px;
} }
#jvvhyocuyv .gt_indent_4 { #hbcvqyzeai .gt_indent_4 {
text-indent: 20px; text-indent: 20px;
} }
#jvvhyocuyv .gt_indent_5 { #hbcvqyzeai .gt_indent_5 {
text-indent: 25px; text-indent: 25px;
} }
</style> </style>
@ -1802,7 +1802,7 @@ Note: as opposed to the build in datediff() this handles counting years as integ
<p>This function wraps all the above demonstrated function to get the <p>This function wraps all the above demonstrated function to get the
dataset, the metadata, apply the <code>REDCap_split</code>function and dataset, the metadata, apply the <code>REDCap_split</code>function and
then a bit of cleaning.</p> then a bit of cleaning.</p>
<p>The function works verysimilarly as the <p>The function works very similar to the
<code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code>.</p> <code><a href="https://ouhscbbmc.github.io/REDCapR/reference/redcap_read.html" class="external-link">REDCapR::redcap_read()</a></code>.</p>
<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="co"># read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")</span></span> <code class="sourceCode R"><span><span class="co"># read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")</span></span>

View File

@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>

View File

@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -64,18 +64,18 @@
<div class="section level2 citation"> <div class="section level2 citation">
<h2 id="citation">Citation</h2> <h2 id="citation">Citation</h2>
<p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p> <p><small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/DESCRIPTION" class="external-link"><code>DESCRIPTION</code></a></small></p>
<p>Damsbo A, Egeler P (2023). <p>Damsbo A, Egeler P (2023).
<em>REDCapCAST: REDCap Castellated data handling</em>. <em>REDCapCAST: REDCap Castellated Data Handling</em>.
R package version 23.4.1, <a href="https://github.com/agdamsbo/REDCapRITS" class="external-link">https://github.com/agdamsbo/REDCapRITS</a>. R package version 23.4.1, <a href="https://github.com/agdamsbo/REDCapCAST" class="external-link">https://github.com/agdamsbo/REDCapCAST</a>.
</p> </p>
<pre>@Manual{, <pre>@Manual{,
title = {REDCapCAST: REDCap Castellated data handling}, title = {REDCapCAST: REDCap Castellated Data Handling},
author = {Andreas Gammelgaard Damsbo and Paul Egeler}, author = {Andreas Gammelgaard Damsbo and Paul Egeler},
year = {2023}, year = {2023},
note = {R package version 23.4.1}, note = {R package version 23.4.1},
url = {https://github.com/agdamsbo/REDCapRITS}, url = {https://github.com/agdamsbo/REDCapCAST},
}</pre> }</pre>
</div> </div>
</main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2> </main><aside class="col-md-3"><nav id="toc"><h2>On this page</h2>

View File

@ -5,9 +5,9 @@
<meta charset="utf-8"> <meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge"> <meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="This package is based on REDCapRITS by Paul Egeler and Spectrum Health. <meta name="description" content="Based on REDCapRITS by Paul Egeler and Spectrum Health.
See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS). See &lt;https://github.com/SpectrumHealthResearch/REDCapRITS&gt;.
Handle the castellated dataset from REDCap projects with repeating Handles the castellated dataset from REDCap projects with repeating
instruments. Split data into multiple tables. This will take raw output from instruments. Split data into multiple tables. This will take raw output from
a REDCap export and split it into a base table and child tables for each a REDCap export and split it into a base table and child tables for each
repeated instrument. repeated instrument.
@ -18,15 +18,15 @@
procedures for seamless data downloads to common statistical packages; and procedures for seamless data downloads to common statistical packages; and
4) procedures for data integration and interoperability with external sources 4) procedures for data integration and interoperability with external sources
(&lt;doi:10.1016/j.jbi.2008.08.010&gt;; &lt;doi:10.1016/j.jbi.2019.103208&gt;)."> (&lt;doi:10.1016/j.jbi.2008.08.010&gt;; &lt;doi:10.1016/j.jbi.2019.103208&gt;).">
<title>REDCap Castellated data handling • REDCapCAST</title> <title>REDCap Castellated Data Handling • REDCapCAST</title>
<script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> <script src="deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
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<meta property="og:description" content="This package is based on REDCapRITS by Paul Egeler and Spectrum Health. <meta property="og:description" content="Based on REDCapRITS by Paul Egeler and Spectrum Health.
See [https://github.com/SpectrumHealthResearch/REDCapRITS](https://github.com/SpectrumHealthResearch/REDCapRITS). See &lt;https://github.com/SpectrumHealthResearch/REDCapRITS&gt;.
Handle the castellated dataset from REDCap projects with repeating Handles the castellated dataset from REDCap projects with repeating
instruments. Split data into multiple tables. This will take raw output from instruments. Split data into multiple tables. This will take raw output from
a REDCap export and split it into a base table and child tables for each a REDCap export and split it into a base table and child tables for each
repeated instrument. repeated instrument.
@ -78,7 +78,7 @@
<ul class="navbar-nav"> <ul class="navbar-nav">
<li class="nav-item"> <li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -119,8 +119,8 @@
</main><aside class="col-md-3"><div class="links"> </main><aside class="col-md-3"><div class="links">
<h2 data-toc-skip>Links</h2> <h2 data-toc-skip>Links</h2>
<ul class="list-unstyled"> <ul class="list-unstyled">
<li><a href="https://github.com/agdamsbo/REDCapRITS/" class="external-link">Browse source code</a></li> <li><a href="https://github.com/agdamsbo/REDCapCAST/" class="external-link">Browse source code</a></li>
<li><a href="https://github.com/agdamsbo/REDCapRITS/issues" class="external-link">Report a bug</a></li> <li><a href="https://github.com/agdamsbo/REDCapCAST/issues" class="external-link">Report a bug</a></li>
</ul> </ul>
</div> </div>

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@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -47,7 +47,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Changelog</h1> <img src="" class="logo" alt=""><h1>Changelog</h1>
<small>Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small> <small>Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/NEWS.md" class="external-link"><code>NEWS.md</code></a></small>
</div> </div>
<div class="section level2"> <div class="section level2">

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@ -3,5 +3,5 @@ pkgdown: 2.0.7
pkgdown_sha: ~ pkgdown_sha: ~
articles: articles:
Introduction: Introduction.html Introduction: Introduction.html
last_built: 2023-04-13T10:14Z last_built: 2023-04-14T07:46Z

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@ -38,7 +38,7 @@ is used to determine which fields should be included in each resultant table."><
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -51,7 +51,7 @@ is used to determine which fields should be included in each resultant table."><
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1> <img src="" class="logo" alt=""><h1>Split REDCap repeating instruments table into multiple tables</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/REDCap_split.r" class="external-link"><code>R/REDCap_split.r</code></a></small>
<div class="d-none name"><code>REDCap_split.Rd</code></div> <div class="d-none name"><code>REDCap_split.Rd</code></div>
</div> </div>

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@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -47,7 +47,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>focused_metadata</h1> <img src="" class="logo" alt=""><h1>focused_metadata</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>focused_metadata.Rd</code></div> <div class="d-none name"><code>focused_metadata.Rd</code></div>
</div> </div>

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@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -94,7 +94,7 @@
<code><a href="redcapcast_meta.html">redcapcast_meta</a></code> <code><a href="redcapcast_meta.html">redcapcast_meta</a></code>
</dt> </dt>
<dd>REDCap matedata from data base</dd> <dd>REDCap metadata from data base</dd>
</dl><dl><dt> </dl><dl><dt>
<code><a href="sanitize_split.html">sanitize_split()</a></code> <code><a href="sanitize_split.html">sanitize_split()</a></code>

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@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -47,7 +47,7 @@
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Match fields to forms</h1> <img src="" class="logo" alt=""><h1>Match fields to forms</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>match_fields_to_form.Rd</code></div> <div class="d-none name"><code>match_fields_to_form.Rd</code></div>
</div> </div>

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@ -40,7 +40,7 @@ Works with longitudinal projects with repeating instruments."><!-- mathjax --><s
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -53,7 +53,7 @@ Works with longitudinal projects with repeating instruments."><!-- mathjax --><s
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Download REDCap data</h1> <img src="" class="logo" alt=""><h1>Download REDCap data</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/read_redcap_tables.R" class="external-link"><code>R/read_redcap_tables.R</code></a></small>
<div class="d-none name"><code>read_redcap_tables.Rd</code></div> <div class="d-none name"><code>read_redcap_tables.Rd</code></div>
</div> </div>

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@ -36,7 +36,7 @@ Handles longitudinal projects, but not yet repeated instruments."><!-- mathjax -
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -49,7 +49,7 @@ Handles longitudinal projects, but not yet repeated instruments."><!-- mathjax -
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Redcap Wider</h1> <img src="" class="logo" alt=""><h1>Redcap Wider</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcap_wider.R" class="external-link"><code>R/redcap_wider.R</code></a></small>
<div class="d-none name"><code>redcap_wider.Rd</code></div> <div class="d-none name"><code>redcap_wider.Rd</code></div>
</div> </div>

View File

@ -36,7 +36,7 @@ Contains only synthetic data."><!-- mathjax --><script src="https://cdnjs.cloudf
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -49,7 +49,7 @@ Contains only synthetic data."><!-- mathjax --><script src="https://cdnjs.cloudf
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Data set for demonstration</h1> <img src="" class="logo" alt=""><h1>Data set for demonstration</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_data.R" class="external-link"><code>R/redcapcast_data.R</code></a></small>
<div class="d-none name"><code>redcapcast_data.Rd</code></div> <div class="d-none name"><code>redcapcast_data.Rd</code></div>
</div> </div>

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@ -1,5 +1,5 @@
<!DOCTYPE html> <!DOCTYPE html>
<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><title>REDCap matedata from data base — redcapcast_meta • REDCapCAST</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap matedata from data base — redcapcast_meta"><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><meta name="description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><title>REDCap metadata from data base — redcapcast_meta • REDCapCAST</title><script src="../deps/jquery-3.6.0/jquery-3.6.0.min.js"></script><meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"><link href="../deps/bootstrap-5.2.2/bootstrap.min.css" rel="stylesheet"><script src="../deps/bootstrap-5.2.2/bootstrap.bundle.min.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- bootstrap-toc --><script src="https://cdn.jsdelivr.net/gh/afeld/bootstrap-toc@v1.0.1/dist/bootstrap-toc.min.js" integrity="sha256-4veVQbu7//Lk5TSmc7YV48MxtMy98e26cf5MrgZYnwo=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- search --><script src="https://cdnjs.cloudflare.com/ajax/libs/fuse.js/6.4.6/fuse.js" integrity="sha512-zv6Ywkjyktsohkbp9bb45V6tEMoWhzFzXis+LrMehmJZZSys19Yxf1dopHx7WzIKxr5tK2dVcYmaCk2uqdjF4A==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/autocomplete.js/0.38.0/autocomplete.jquery.min.js" integrity="sha512-GU9ayf+66Xx2TmpxqJpliWbT5PiGYxpaG8rfnBEk1LL8l1KGkRShhngwdXK1UgqhAzWpZHSiYPc09/NwDQIGyg==" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mark.js/8.11.1/mark.min.js" integrity="sha512-5CYOlHXGh6QpOFA/TeTylKLWfB3ftPsde7AnmhuitiTX4K5SqCLBeKro6sPS8ilsz1Q4NRx3v8Ko2IBiszzdww==" crossorigin="anonymous"></script><!-- pkgdown --><script src="../pkgdown.js"></script><meta property="og:title" content="REDCap metadata from data base — redcapcast_meta"><meta property="og:description" content="This metadata dataset from a REDCap database is for demonstrational purposes."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]--></head><body> <![endif]--></head><body>
@ -34,7 +34,7 @@
<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
@ -46,8 +46,8 @@
</nav><div class="container template-reference-topic"> </nav><div class="container template-reference-topic">
<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>REDCap matedata from data base</h1> <img src="" class="logo" alt=""><h1>REDCap metadata from data base</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/redcapcast_meta.R" class="external-link"><code>R/redcapcast_meta.R</code></a></small>
<div class="d-none name"><code>redcapcast_meta.Rd</code></div> <div class="d-none name"><code>redcapcast_meta.Rd</code></div>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
</a> </a>
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<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Sanitize list of data frames</h1> <img src="" class="logo" alt=""><h1>Sanitize list of data frames</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>sanitize_split.Rd</code></div> <div class="d-none name"><code>sanitize_split.Rd</code></div>
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<input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form> <input type="search" class="form-control me-sm-2" aria-label="Toggle navigation" name="search-input" data-search-index="../search.json" id="search-input" placeholder="Search for" autocomplete="off"></form>
<ul class="navbar-nav"><li class="nav-item"> <ul class="navbar-nav"><li class="nav-item">
<a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapRITS/" aria-label="github"> <a class="external-link nav-link" href="https://github.com/agdamsbo/REDCapCAST/" aria-label="github">
<span class="fab fa fab fa-github fa-lg"></span> <span class="fab fa fab fa-github fa-lg"></span>
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<div class="row"> <div class="row">
<main id="main" class="col-md-9"><div class="page-header"> <main id="main" class="col-md-9"><div class="page-header">
<img src="" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1> <img src="" class="logo" alt=""><h1>Split a data frame into separate tables for each form</h1>
<small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapRITS/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small> <small class="dont-index">Source: <a href="https://github.com/agdamsbo/REDCapCAST/blob/HEAD/R/utils.r" class="external-link"><code>R/utils.r</code></a></small>
<div class="d-none name"><code>split_non_repeating_forms.Rd</code></div> <div class="d-none name"><code>split_non_repeating_forms.Rd</code></div>
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Assesment
CMD CMD
Codecov Codecov
DataDictionary DataDictionary
@ -12,14 +13,14 @@ REDCapR
REDCapRITS REDCapRITS
SpectrumHealthResearch SpectrumHealthResearch
api api
demonstrational
descirption descirption
desireable desireable
doi doi
dplyr dplyr
github
https
immprovements immprovements
jbi jbi
mRS
matadata matadata
md md
nad nad
@ -27,3 +28,44 @@ og
thorugh thorugh
tidyverse tidyverse
uri uri
agdamsbo
Andreas
au
aut
BugReports
clin
covr
cre
Damsbo
dk
doi
dplyr
egeler
Egeler
Gammelgaard
github
Hmisc
https
httr
jbi
jsonlite
keyring
knitr
LazyData
ORCID
paul
RCurl
readr
REDCap,49
redcapcast
REDCapCAST
REDCapR
REDCapRITS
rmarkdown
RoxygenNote
spectrumhealth
SpectrumHealthResearch
testthat
tidyr
tidyselect
VignetteBuilder

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@ -3,7 +3,7 @@
\docType{data} \docType{data}
\name{redcapcast_meta} \name{redcapcast_meta}
\alias{redcapcast_meta} \alias{redcapcast_meta}
\title{REDCap matedata from data base} \title{REDCap metadata from data base}
\format{ \format{
A data frame with 22 variables: A data frame with 22 variables:
\describe{ \describe{

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This function wraps all the above demonstrated function to get the dataset, the metadata, apply the `REDCap_split`function and then a bit of cleaning. This function wraps all the above demonstrated function to get the dataset, the metadata, apply the `REDCap_split`function and then a bit of cleaning.
The function works verysimilarly as the `REDCapR::redcap_read()`. The function works very similar to the `REDCapR::redcap_read()`.
```{r eval=FALSE} ```{r eval=FALSE}
# read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN") # read_redcap_tables(uri = "YOUR URI", token = "YOUR TOKEN")