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field names validity checking also added while at it
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NEWS.md
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NEWS.md
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### Functions
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### Functions
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* Fix: `read_redcap_tables()`: checking form names based on data dictionary to allow handling of non-longitudinal projects. Prints invalid form names and invalid event names. If invalid form names are supplied to `REDCapR::redcap_read()` (which is the backbone), all forms are exported, which is not what we want with a focused approach. Invalid event names will give an output with a rather peculiar formatting.
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* Fix: `read_redcap_tables()`: checking form names based on data dictionary to allow handling of non-longitudinal projects. Prints invalid form names and invalid event names. If invalid form names are supplied to `REDCapR::redcap_read()` (which is the backbone), all forms are exported, which is not what we want with a focused approach. Invalid event names will give an output with a rather peculiar formatting. Checking of field names validity is also added.
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# REDCapCAST 23.12.1
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# REDCapCAST 23.12.1
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@ -42,6 +42,16 @@ read_redcap_tables <- function(uri,
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m <- REDCapR::redcap_metadata_read(redcap_uri = uri, token = token)[["data"]]
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m <- REDCapR::redcap_metadata_read(redcap_uri = uri, token = token)[["data"]]
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if (!is.null(fields)){
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fields_test <- fields %in% unique(m$field_name)
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if (any(!fields_test)){
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print(paste0("The following field names are invalid: ", paste(fields[!fields_test],collapse=", "),"."))
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stop("Not all supplied field names are valid")
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}
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}
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if (!is.null(forms)){
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if (!is.null(forms)){
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@ -49,7 +59,7 @@ read_redcap_tables <- function(uri,
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if (any(!forms_test)){
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if (any(!forms_test)){
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print(paste0("The following form names are invalid: ", paste(forms[!forms_test],collapse=", "),"."))
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print(paste0("The following form names are invalid: ", paste(forms[!forms_test],collapse=", "),"."))
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stop("Not all supplied forms are valid")
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stop("Not all supplied form names are valid")
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}
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}
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}
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}
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